Wall clock time and date at job start Mon Mar 30 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 110.99916 * 2 1 4 4 C 1.50694 * 109.46975 * 293.94905 * 3 2 1 5 5 H 1.07998 * 120.00452 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99586 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00313 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99830 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47433 * 120.00370 * 8 6 4 11 11 H 1.48504 * 109.47321 * 240.00362 * 8 6 4 12 12 C 1.46904 * 110.99879 * 123.95347 * 2 1 3 13 13 C 1.53002 * 109.46875 * 85.48838 * 12 2 1 14 14 C 1.52998 * 109.47388 * 55.29696 * 13 12 2 15 15 C 1.52995 * 109.47189 * 295.29526 * 13 12 2 16 16 C 1.50701 * 109.46843 * 175.29350 * 13 12 2 17 17 C 1.38238 * 119.99919 * 180.02562 * 16 13 12 18 18 C 1.38237 * 119.99794 * 180.02562 * 17 16 13 19 19 C 1.38232 * 120.00178 * 359.95666 * 18 17 16 20 20 C 1.38230 * 120.00034 * 0.27513 * 19 18 17 21 21 C 1.38235 * 120.00315 * 359.97438 * 16 13 12 22 22 H 1.09001 * 109.47476 * 289.56137 * 1 2 3 23 23 H 1.09004 * 109.47436 * 49.55929 * 1 2 3 24 24 H 1.09007 * 109.47373 * 169.56030 * 1 2 3 25 25 H 1.08999 * 109.46902 * 53.95779 * 3 2 1 26 26 H 1.09010 * 109.46827 * 173.95348 * 3 2 1 27 27 H 0.96994 * 120.00117 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47261 * 325.48881 * 12 2 1 29 29 H 1.09005 * 109.47081 * 205.48792 * 12 2 1 30 30 H 1.08991 * 109.47391 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.46945 * 299.99792 * 14 13 12 32 32 H 1.09000 * 109.47595 * 59.99242 * 14 13 12 33 33 H 1.08999 * 109.46971 * 314.32970 * 15 13 12 34 34 H 1.08991 * 109.47549 * 74.33240 * 15 13 12 35 35 H 1.09006 * 109.47258 * 194.33068 * 15 13 12 36 36 H 1.07997 * 120.00007 * 359.97438 * 17 16 13 37 37 H 1.08002 * 119.99495 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.99941 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.00327 * 179.72728 * 20 19 18 40 40 H 1.08006 * 119.99581 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0268 3.3494 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5819 4.1872 -3.1377 9 1 0.8149 3.2445 -3.9910 10 1 0.7544 5.3881 -2.8584 11 1 2.8234 4.5947 -3.8434 12 6 1.9954 -0.7660 1.1376 13 6 2.0722 -2.2475 0.7631 14 6 2.9039 -2.4090 -0.5109 15 6 0.6607 -2.7865 0.5224 16 6 2.7190 -3.0166 1.8861 17 6 2.8982 -4.3828 1.7747 18 6 3.4910 -5.0883 2.8051 19 6 3.9054 -4.4277 3.9464 20 6 3.7218 -3.0623 4.0598 21 6 3.1340 -2.3559 3.0272 22 1 -0.3634 0.3441 0.9683 23 1 -0.3634 0.6666 -0.7821 24 1 -0.3634 -1.0107 -0.1862 25 1 1.5610 1.9273 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.9864 4.9179 -0.7769 28 1 1.3350 -0.6420 1.9959 29 1 2.9916 -0.4029 1.3902 30 1 2.9590 -3.4644 -0.7775 31 1 2.4361 -1.8527 -1.3232 32 1 3.9095 -2.0249 -0.3395 33 1 0.0015 -2.4487 1.3221 34 1 0.2895 -2.4188 -0.4341 35 1 0.6854 -3.8762 0.5079 36 1 2.5743 -4.8990 0.8831 37 1 3.6306 -6.1558 2.7182 38 1 4.3690 -4.9789 4.7512 39 1 4.0416 -2.5467 4.9533 40 1 2.9951 -1.2883 3.1136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686736696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:12 Heat of formation + Delta-G solvation = 24.258777 kcal Electronic energy + Delta-G solvation = -18148.949581 eV Core-core repulsion = 15542.436084 eV Total energy + Delta-G solvation = -2606.513497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77606 -37.27483 -34.45336 -32.31200 -30.92531 -29.55067 -27.59335 -27.17638 -26.18522 -23.87361 -22.64487 -22.05498 -20.33134 -18.74256 -16.93544 -16.25381 -15.07182 -14.91546 -14.77804 -14.62218 -14.10698 -13.57633 -13.27438 -13.15361 -12.89657 -12.70991 -12.41250 -12.11079 -11.69845 -11.59328 -11.28981 -11.20266 -10.95398 -10.81380 -10.72410 -10.48193 -10.40440 -10.19991 -10.06922 -9.69341 -9.10221 -8.81146 -8.53437 -8.42490 -7.16457 -6.01036 -4.01927 1.49215 1.50635 3.31688 3.39183 3.43873 3.90784 4.43389 4.76330 4.91997 5.05541 5.16215 5.24827 5.33503 5.36166 5.48919 5.59164 5.65481 5.68717 5.98441 6.01109 6.11307 6.13711 6.14635 6.20996 6.31146 6.36018 6.45494 6.46122 6.51641 6.60240 6.70630 6.81460 6.88421 6.93301 7.13248 7.33078 7.39214 7.83295 8.12673 8.25175 8.59045 9.06406 9.62248 11.09959 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.004868 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.353252 B = 5750.966341 C = 6040.661278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.063 3.937 13 C -0.020 4.020 14 C -0.123 4.123 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.122 4.122 22 H 0.007 0.993 23 H 0.072 0.928 24 H 0.059 0.941 25 H -0.012 1.012 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -15.856 6.482 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.066 4.066 13 C -0.021 4.021 14 C -0.180 4.180 15 C -0.193 4.193 16 C -0.058 4.058 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.140 4.140 22 H 0.025 0.975 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.006 0.994 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.099 -15.891 6.074 17.013 hybrid contribution -0.348 1.031 0.093 1.092 sum -0.446 -14.861 6.167 16.096 Atomic orbital electron populations 1.22629 0.89151 1.01077 0.99770 1.61974 1.06713 1.17386 1.39708 1.19766 0.95201 0.81826 0.96482 1.21209 1.34525 0.96830 1.01720 0.91799 1.24991 0.95374 0.97395 0.96916 1.69968 1.38563 1.11374 1.34023 0.86468 0.78135 0.79321 0.83646 1.19665 1.21183 1.21052 1.22229 0.99658 0.92437 0.92272 1.19513 0.95045 0.94375 0.93191 1.21706 0.99437 0.99889 0.97014 1.22099 0.95392 0.99562 1.02279 1.20047 0.96932 0.93685 0.95090 1.20980 0.99894 0.93888 0.98790 1.21074 0.99385 0.99493 0.94115 1.21061 1.01357 0.94741 0.98075 1.21143 0.99447 0.94380 0.98773 1.21296 0.98763 1.00514 0.93395 0.97478 0.90892 0.92212 0.99394 0.95340 0.93041 0.95390 0.91595 0.94148 0.90112 0.93256 0.93194 0.90741 0.93501 0.86259 0.86554 0.86653 0.86411 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.90 60.06 0.53 0.96 16 2 N -0.53 -11.27 3.63 -244.36 -0.89 -12.16 16 3 C 0.19 5.00 4.66 -4.98 -0.02 4.98 16 4 C -0.50 -14.10 8.36 -34.44 -0.29 -14.39 16 5 H 0.06 1.77 7.18 -52.49 -0.38 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.06 1.13 2.89 -3.82 -0.01 1.12 16 13 C -0.02 -0.31 0.68 -155.66 -0.11 -0.42 16 14 C -0.12 -1.91 8.03 37.16 0.30 -1.62 16 15 C -0.14 -1.88 6.97 37.15 0.26 -1.62 16 16 C -0.06 -0.81 4.76 -104.62 -0.50 -1.30 16 17 C -0.12 -1.47 8.53 -39.58 -0.34 -1.81 16 18 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 19 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 20 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 21 C -0.12 -1.70 8.98 -39.58 -0.36 -2.06 16 22 H 0.01 0.13 7.89 -51.93 -0.41 -0.28 16 23 H 0.07 1.53 6.64 -51.93 -0.34 1.18 16 24 H 0.06 0.98 4.44 -51.93 -0.23 0.75 16 25 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 26 H 0.03 0.79 7.79 -51.92 -0.40 0.39 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.50 7.28 -51.93 -0.38 0.12 16 29 H 0.07 1.25 6.63 -51.93 -0.34 0.90 16 30 H 0.04 0.54 7.39 -51.93 -0.38 0.15 16 31 H 0.08 1.40 7.48 -51.93 -0.39 1.02 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 34 H 0.07 1.07 6.02 -51.93 -0.31 0.75 16 35 H 0.05 0.57 6.99 -51.93 -0.36 0.20 16 36 H 0.12 1.34 7.09 -52.49 -0.37 0.97 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.80 5.89 -52.48 -0.31 1.49 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -29.61 311.41 -8.57 -38.18 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.27 Total: -0.98 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -1.82 Total: -20.27 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.15 Total: -38.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.61 -8.57 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686736696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.434 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds