Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 110.99916 * 2 1 4 4 C 1.50694 * 109.46975 * 293.94905 * 3 2 1 5 5 H 1.07998 * 120.00452 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99586 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00313 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99830 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47433 * 120.00370 * 8 6 4 11 11 H 1.48504 * 109.47321 * 240.00362 * 8 6 4 12 12 C 1.46904 * 110.99879 * 123.95347 * 2 1 3 13 13 C 1.53002 * 109.46875 * 85.48838 * 12 2 1 14 14 C 1.52998 * 109.47388 * 55.29696 * 13 12 2 15 15 C 1.52995 * 109.47189 * 295.29526 * 13 12 2 16 16 C 1.50701 * 109.46843 * 175.29350 * 13 12 2 17 17 C 1.38238 * 119.99919 * 180.02562 * 16 13 12 18 18 C 1.38237 * 119.99794 * 180.02562 * 17 16 13 19 19 C 1.38232 * 120.00178 * 359.95666 * 18 17 16 20 20 C 1.38230 * 120.00034 * 0.27513 * 19 18 17 21 21 C 1.38235 * 120.00315 * 359.97438 * 16 13 12 22 22 H 1.09001 * 109.47476 * 289.56137 * 1 2 3 23 23 H 1.09004 * 109.47436 * 49.55929 * 1 2 3 24 24 H 1.09007 * 109.47373 * 169.56030 * 1 2 3 25 25 H 1.08999 * 109.46902 * 53.95779 * 3 2 1 26 26 H 1.09010 * 109.46827 * 173.95348 * 3 2 1 27 27 H 0.96994 * 120.00117 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47261 * 325.48881 * 12 2 1 29 29 H 1.09005 * 109.47081 * 205.48792 * 12 2 1 30 30 H 1.08991 * 109.47391 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.46945 * 299.99792 * 14 13 12 32 32 H 1.09000 * 109.47595 * 59.99242 * 14 13 12 33 33 H 1.08999 * 109.46971 * 314.32970 * 15 13 12 34 34 H 1.08991 * 109.47549 * 74.33240 * 15 13 12 35 35 H 1.09006 * 109.47258 * 194.33068 * 15 13 12 36 36 H 1.07997 * 120.00007 * 359.97438 * 17 16 13 37 37 H 1.08002 * 119.99495 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.99941 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.00327 * 179.72728 * 20 19 18 40 40 H 1.08006 * 119.99581 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0268 3.3494 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5819 4.1872 -3.1377 9 1 0.8149 3.2445 -3.9910 10 1 0.7544 5.3881 -2.8584 11 1 2.8234 4.5947 -3.8434 12 6 1.9954 -0.7660 1.1376 13 6 2.0722 -2.2475 0.7631 14 6 2.9039 -2.4090 -0.5109 15 6 0.6607 -2.7865 0.5224 16 6 2.7190 -3.0166 1.8861 17 6 2.8982 -4.3828 1.7747 18 6 3.4910 -5.0883 2.8051 19 6 3.9054 -4.4277 3.9464 20 6 3.7218 -3.0623 4.0598 21 6 3.1340 -2.3559 3.0272 22 1 -0.3634 0.3441 0.9683 23 1 -0.3634 0.6666 -0.7821 24 1 -0.3634 -1.0107 -0.1862 25 1 1.5610 1.9273 0.8310 26 1 3.0797 1.3444 0.1083 27 1 2.9864 4.9179 -0.7769 28 1 1.3350 -0.6420 1.9959 29 1 2.9916 -0.4029 1.3902 30 1 2.9590 -3.4644 -0.7775 31 1 2.4361 -1.8527 -1.3232 32 1 3.9095 -2.0249 -0.3395 33 1 0.0015 -2.4487 1.3221 34 1 0.2895 -2.4188 -0.4341 35 1 0.6854 -3.8762 0.5079 36 1 2.5743 -4.8990 0.8831 37 1 3.6306 -6.1558 2.7182 38 1 4.3690 -4.9789 4.7512 39 1 4.0416 -2.5467 4.9533 40 1 2.9951 -1.2883 3.1136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686736696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = 8.314539 kcal Electronic energy + Delta-G solvation = -18149.640975 eV Core-core repulsion = 15542.436084 eV Total energy + Delta-G solvation = -2607.204891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88526 -38.66476 -36.00052 -34.34949 -31.88564 -30.64305 -29.28386 -28.78871 -27.58839 -25.62981 -23.80249 -23.24069 -21.95039 -19.97867 -18.45653 -17.93851 -16.74346 -16.33819 -16.00615 -15.87231 -15.64413 -14.93872 -14.55440 -14.39848 -14.24222 -14.11235 -13.90122 -13.61633 -13.11100 -13.05145 -12.75143 -12.72378 -12.55363 -12.35803 -12.21609 -12.03783 -11.87844 -11.68067 -11.53537 -11.33038 -10.94903 -10.62728 -9.75650 -9.51389 -8.95253 -8.20226 -6.30194 0.53642 0.55993 1.40842 1.41577 1.55292 2.40455 2.95277 3.12363 3.29702 3.81827 3.93824 4.09692 4.21416 4.25932 4.34792 4.40461 4.52899 4.63474 4.68167 4.72339 4.75825 4.81101 4.90533 5.03891 5.09894 5.12825 5.16695 5.22019 5.23396 5.26191 5.34230 5.47419 5.57947 5.64997 5.68085 5.70952 5.84047 6.06312 6.19655 6.35739 6.65853 6.87164 7.39691 8.91338 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.004868 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.353252 B = 5750.966341 C = 6040.661278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.208 3.792 4 C -0.519 4.519 5 H 0.066 0.934 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.067 3.933 13 C -0.013 4.013 14 C -0.118 4.118 15 C -0.133 4.133 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.146 4.146 22 H 0.006 0.994 23 H 0.054 0.946 24 H 0.095 0.905 25 H -0.044 1.044 26 H -0.001 1.001 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -18.244 6.039 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C 0.082 3.918 4 C -0.557 4.557 5 H 0.084 0.916 6 C -0.198 4.198 7 N -0.578 5.578 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.061 4.061 13 C -0.013 4.013 14 C -0.175 4.175 15 C -0.190 4.190 16 C -0.073 4.073 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.164 4.164 22 H 0.024 0.976 23 H 0.073 0.927 24 H 0.113 0.887 25 H -0.026 1.026 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.593 -18.302 5.638 19.160 hybrid contribution -0.154 1.711 0.332 1.749 sum -0.747 -16.591 5.969 17.649 Atomic orbital electron populations 1.22673 0.87762 1.02806 0.99058 1.61942 1.07934 1.14507 1.41375 1.19412 0.93273 0.84253 0.94897 1.21505 1.34561 0.97397 1.02256 0.91612 1.25939 0.95051 0.98118 1.00709 1.70103 1.39584 1.11858 1.36261 0.85319 0.78039 0.78197 0.78971 1.18499 1.20494 1.20500 1.22261 0.98296 0.94301 0.91277 1.19388 0.96341 0.92019 0.93602 1.21642 0.98235 1.01189 0.96467 1.22048 0.94033 1.01086 1.01787 1.19957 0.98153 0.94581 0.94658 1.21177 0.99893 0.93012 0.99903 1.21459 0.98000 1.00992 0.93384 1.21439 1.00471 0.94276 0.98911 1.21375 0.99097 0.95263 0.98767 1.21314 1.00412 1.00040 0.94623 0.97587 0.92687 0.88676 1.02593 0.98318 0.92768 0.95329 0.93558 0.91364 0.92223 0.94945 0.93250 0.91298 0.91063 0.84644 0.83553 0.83858 0.84986 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.97 8.90 127.69 1.14 2.10 16 2 N -0.53 -23.32 3.63 -927.03 -3.37 -26.69 16 3 C 0.21 11.41 4.66 85.55 0.40 11.81 16 4 C -0.52 -29.82 8.36 25.60 0.21 -29.61 16 5 H 0.07 3.68 7.18 -2.91 -0.02 3.66 16 6 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 7 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.07 2.51 2.89 86.30 0.25 2.76 16 13 C -0.01 -0.38 0.68 -52.93 -0.04 -0.42 16 14 C -0.12 -3.62 8.03 71.98 0.58 -3.04 16 15 C -0.13 -3.40 6.97 71.98 0.50 -2.90 16 16 C -0.07 -1.99 4.76 -19.86 -0.09 -2.09 16 17 C -0.12 -2.72 8.53 22.27 0.19 -2.53 16 18 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 19 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 20 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 21 C -0.15 -4.10 8.98 22.27 0.20 -3.90 16 22 H 0.01 0.22 7.89 -2.39 -0.02 0.20 16 23 H 0.05 2.33 6.64 -2.38 -0.02 2.31 16 24 H 0.10 3.02 4.44 -2.38 -0.01 3.01 16 25 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 26 H 0.00 -0.08 7.79 -2.38 -0.02 -0.10 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.03 1.06 7.28 -2.39 -0.02 1.04 16 29 H 0.05 1.89 6.63 -2.38 -0.02 1.87 16 30 H 0.07 1.68 7.39 -2.39 -0.02 1.66 16 31 H 0.06 2.07 7.48 -2.39 -0.02 2.05 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.27 7.82 -2.39 -0.02 1.25 16 34 H 0.07 1.83 6.02 -2.39 -0.01 1.82 16 35 H 0.07 1.50 6.99 -2.38 -0.02 1.48 16 36 H 0.14 2.52 7.09 -2.91 -0.02 2.50 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.11 3.32 5.89 -2.91 -0.02 3.30 16 Total: -1.00 -65.37 311.41 4.42 -60.95 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.00 Total: 10.71 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 4.47 Total: -34.56 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.08 Total: -83.91 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.37 4.42 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686736696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.268 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds