Wall clock time and date at job start Mon Mar 30 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47106 * 2 1 4 4 C 1.52997 * 109.47401 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47434 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99814 * 90.00268 * 5 4 3 7 7 C 1.38228 * 120.00093 * 180.02562 * 6 5 4 8 8 C 1.38237 * 119.99947 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99755 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47211 * 90.00224 * 9 8 7 11 11 N 1.46899 * 109.47483 * 329.99742 * 9 8 7 12 12 C 1.50702 * 109.46869 * 209.99780 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.38228 * 119.99901 * 0.25015 * 8 7 6 21 21 C 1.38232 * 120.00262 * 269.98232 * 5 4 3 22 22 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47103 * 299.99648 * 1 2 3 24 24 H 1.08998 * 109.46850 * 60.00350 * 1 2 3 25 25 H 1.09004 * 109.47409 * 240.00349 * 2 1 3 26 26 H 1.08998 * 109.47306 * 119.99927 * 2 1 3 27 27 H 1.09004 * 109.46702 * 59.99916 * 3 2 1 28 28 H 1.08998 * 109.46979 * 300.00127 * 3 2 1 29 29 H 1.09004 * 109.46889 * 60.00487 * 4 3 2 30 30 H 1.09002 * 109.47173 * 300.00903 * 4 3 2 31 31 H 1.08003 * 120.00053 * 359.97438 * 6 5 4 32 32 H 1.08010 * 120.00185 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47094 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46851 * 299.99806 * 10 9 8 35 35 H 1.09003 * 109.47532 * 59.99881 * 10 9 8 36 36 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 37 37 H 1.00904 * 110.99882 * 63.95460 * 11 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.08002 * 119.99941 * 179.72455 * 20 8 7 40 40 H 1.08006 * 119.99701 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 6 4.3022 3.5146 1.1987 7 6 4.7625 4.8180 1.1994 8 6 4.9923 5.4705 0.0025 9 6 5.4936 6.8917 0.0033 10 6 7.0235 6.8929 0.0032 11 7 5.0034 7.5832 1.2030 12 6 4.9907 7.6023 -1.2268 13 1 4.3698 7.0774 -1.9379 14 6 5.3180 8.9244 -1.4415 15 7 6.0737 9.5636 -0.5755 16 14 4.6883 9.8074 -2.9624 17 1 3.3784 10.4388 -2.6614 18 1 5.6614 10.8542 -3.3654 19 1 4.5245 8.8312 -4.0694 20 6 4.7570 4.8212 -1.1949 21 6 4.3036 3.5153 -1.1955 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9287 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 4.1215 3.0053 2.1338 32 1 4.9417 5.3270 2.1350 33 1 7.3861 7.9208 0.0033 34 1 7.3873 6.3788 0.8929 35 1 7.3873 6.3798 -0.8871 36 1 3.9947 7.5959 1.2264 37 1 5.3792 7.1645 2.0407 38 1 6.3043 10.4937 -0.7267 39 1 4.9323 5.3324 -2.1299 40 1 4.1238 3.0065 -2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687816095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:58 Heat of formation + Delta-G solvation = -12.156410 kcal Electronic energy + Delta-G solvation = -17764.519661 eV Core-core repulsion = 15156.427083 eV Total energy + Delta-G solvation = -2608.092578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52862 -37.69558 -36.06399 -33.77318 -32.35810 -31.70318 -29.55742 -28.61080 -27.19591 -25.02817 -23.30411 -22.54867 -21.81268 -20.72558 -18.13482 -17.49668 -16.51259 -16.26989 -16.04625 -15.55969 -15.55814 -14.87707 -14.63685 -14.43524 -14.15468 -13.85242 -13.68264 -13.31903 -13.21005 -12.87241 -12.70138 -12.51453 -12.32111 -12.16261 -12.02798 -11.93706 -11.74515 -11.67856 -11.38145 -11.33588 -10.79135 -10.43334 -9.66926 -9.22107 -8.80800 -7.86938 -6.09150 0.63318 0.67454 1.43080 1.45614 1.52963 2.49486 3.02338 3.32976 3.87702 4.00539 4.18885 4.21099 4.27155 4.35149 4.38347 4.44196 4.53487 4.77142 4.82446 4.83940 4.87267 4.96399 5.02052 5.05289 5.17164 5.19635 5.29702 5.33069 5.36273 5.40667 5.42600 5.53353 5.68895 5.78125 5.84826 5.87841 6.05972 6.32224 6.43248 6.76830 7.15224 7.34539 7.62128 9.10975 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.004978 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.213356 B = 5623.816700 C = 6100.392058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.069 4.069 5 C -0.102 4.102 6 C -0.120 4.120 7 C -0.142 4.142 8 C -0.099 4.099 9 C 0.270 3.730 10 C -0.112 4.112 11 N -0.814 5.814 12 C -0.537 4.537 13 H 0.050 0.950 14 C 0.041 3.959 15 N -0.870 5.870 16 Si 0.937 3.063 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.124 4.124 21 C -0.126 4.126 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.320 0.680 37 H 0.309 0.691 38 H 0.251 0.749 39 H 0.109 0.891 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -17.207 2.290 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.106 4.106 5 C -0.102 4.102 6 C -0.138 4.138 7 C -0.160 4.160 8 C -0.102 4.102 9 C 0.179 3.821 10 C -0.170 4.170 11 N -0.342 5.342 12 C -0.576 4.576 13 H 0.068 0.932 14 C -0.162 4.162 15 N -0.506 5.506 16 Si 0.764 3.236 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.142 4.142 21 C -0.144 4.144 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.127 0.873 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.111 -16.363 2.049 17.587 hybrid contribution -0.564 0.239 -0.638 0.884 sum -6.675 -16.124 1.411 17.509 Atomic orbital electron populations 1.21790 0.95749 1.01993 1.01643 1.21525 0.95993 0.95758 1.02549 1.21568 0.94169 0.97484 1.01649 1.20560 0.95667 0.90974 1.03420 1.20054 1.00195 0.97403 0.92543 1.21151 1.00060 0.94245 0.98343 1.21118 1.01797 0.95738 0.97375 1.21418 0.96742 0.98583 0.93441 1.17351 0.91518 0.83782 0.89457 1.21581 0.97090 1.01585 0.96733 1.59034 1.11502 1.60614 1.03021 1.21270 1.33199 0.96706 1.06378 0.93187 1.25530 0.94855 0.98114 0.97717 1.70159 1.35598 1.09625 1.35192 0.85922 0.77994 0.78543 0.81167 1.20855 1.21203 1.19772 1.21235 0.99851 0.94864 0.98291 1.21231 1.00428 0.94284 0.98492 0.91837 0.92953 0.93171 0.91531 0.91270 0.92588 0.92992 0.90514 0.90084 0.84458 0.86440 0.91551 0.96065 0.95702 0.86899 0.87826 0.93941 0.87335 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.83 5.93 30.59 0.18 -1.65 16 3 C -0.11 -2.17 5.20 30.59 0.16 -2.01 16 4 C -0.07 -1.44 5.34 29.85 0.16 -1.28 16 5 C -0.10 -2.94 5.13 -19.87 -0.10 -3.04 16 6 C -0.12 -3.64 9.70 22.27 0.22 -3.42 16 7 C -0.14 -5.14 9.29 22.27 0.21 -4.93 16 8 C -0.10 -4.24 4.79 -19.87 -0.10 -4.33 16 9 C 0.27 13.15 0.68 2.03 0.00 13.15 16 10 C -0.11 -5.51 8.50 71.98 0.61 -4.90 16 11 N -0.81 -38.16 7.79 -157.52 -1.23 -39.39 16 12 C -0.54 -29.06 7.55 25.60 0.19 -28.86 16 13 H 0.05 2.72 6.02 -2.91 -0.02 2.70 16 14 C 0.04 2.27 5.23 84.66 0.44 2.71 16 15 N -0.87 -49.67 10.81 21.45 0.23 -49.44 16 16 Si 0.94 43.80 29.54 68.60 2.03 45.82 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 C -0.12 -5.05 8.89 22.27 0.20 -4.85 16 21 C -0.13 -4.17 9.70 22.27 0.22 -3.96 16 22 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 30 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.12 3.99 6.48 -2.91 -0.02 3.97 16 33 H 0.07 3.63 6.08 -2.39 -0.01 3.62 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.32 14.72 8.98 -89.69 -0.81 13.91 16 37 H 0.31 12.87 7.37 -89.69 -0.66 12.21 16 38 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 39 H 0.11 4.76 6.41 -2.91 -0.02 4.74 16 40 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -59.84 320.51 3.69 -56.15 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.45 Total: 35.76 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 3.10 Total: -48.90 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -1.00 Total: -88.83 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -59.84 3.69 -56.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds