Wall clock time and date at job start Mon Mar 30 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47075 * 2 1 4 4 C 1.38306 * 119.96204 * 270.27370 * 3 2 1 5 5 C 1.38265 * 120.14784 * 180.27606 * 4 3 2 6 6 C 1.38133 * 120.07407 * 359.44555 * 5 4 3 7 7 C 1.50698 * 120.03523 * 180.25285 * 6 5 4 8 8 C 1.53001 * 109.47011 * 264.99899 * 7 6 5 9 9 C 1.38886 * 119.92263 * 0.28038 * 6 5 4 10 10 N 1.39676 * 120.07123 * 180.02562 * 9 6 5 11 11 C 1.46500 * 119.99636 * 179.97438 * 10 9 6 12 12 C 1.53006 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08008 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47023 * 120.00475 * 17 15 13 20 20 H 1.48500 * 109.46964 * 240.00269 * 17 15 13 21 21 C 1.38089 * 119.96065 * 89.99699 * 3 2 1 22 22 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47199 * 300.00266 * 1 2 3 24 24 H 1.09000 * 109.46839 * 60.00307 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99734 * 2 1 3 26 26 H 1.08999 * 109.46691 * 120.00224 * 2 1 3 27 27 H 1.08001 * 119.92853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96572 * 179.72711 * 5 4 3 29 29 H 1.08998 * 109.47123 * 25.00408 * 7 6 5 30 30 H 1.08998 * 109.46797 * 145.00355 * 7 6 5 31 31 H 1.08998 * 109.46968 * 60.00561 * 8 7 6 32 32 H 1.08997 * 109.46878 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47592 * 300.00221 * 8 7 6 34 34 H 0.96995 * 120.00298 * 359.97438 * 10 9 6 35 35 H 1.09004 * 109.47369 * 299.99458 * 11 10 9 36 36 H 1.09002 * 109.47776 * 60.00078 * 11 10 9 37 37 H 1.09000 * 109.47113 * 299.99496 * 12 11 10 38 38 H 1.08999 * 109.46999 * 60.00077 * 12 11 10 39 39 H 0.96993 * 120.00115 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.03755 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2572 2.0740 -1.1982 5 6 2.7235 3.3756 -1.2027 6 6 2.9555 4.0319 -0.0096 7 6 3.4582 5.4526 -0.0156 8 6 4.9832 5.4544 0.1085 9 6 2.7253 3.3809 1.1954 10 7 2.9583 4.0418 2.4036 11 6 2.7144 3.3536 3.6738 12 6 3.0466 4.2932 4.8348 13 6 2.7952 3.5856 6.1413 14 1 2.4349 2.5673 6.1435 15 6 3.0260 4.2376 7.3340 16 7 3.4652 5.4772 7.3315 17 14 2.7150 3.3602 8.9536 18 1 2.2280 1.9833 8.6851 19 1 3.9781 3.2950 9.7318 20 1 1.6923 4.1047 9.7315 21 6 2.2622 2.0710 1.1964 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0720 1.5648 -2.1325 28 1 2.9023 3.8813 -2.1401 29 1 3.1690 5.9364 -0.9485 30 1 3.0247 5.9949 0.8247 31 1 5.4167 4.9120 -0.7317 32 1 5.3468 6.4819 0.1047 33 1 5.2725 4.9705 1.0414 34 1 3.2815 4.9563 2.4018 35 1 1.6664 3.0595 3.7324 36 1 3.3447 2.4663 3.7332 37 1 4.0947 4.5869 4.7761 38 1 2.4166 5.1807 4.7756 39 1 3.6273 5.9360 8.1706 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689622123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:32 Heat of formation + Delta-G solvation = -11.730230 kcal Electronic energy + Delta-G solvation = -17525.663594 eV Core-core repulsion = 14917.589497 eV Total energy + Delta-G solvation = -2608.074097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.56935 -36.00097 -34.71611 -32.97230 -32.20541 -30.33848 -28.69304 -27.55237 -24.65830 -24.26522 -22.09283 -21.97824 -20.58406 -19.81630 -16.72356 -16.26464 -15.76109 -15.10261 -14.57894 -14.34155 -14.12775 -13.80971 -13.55598 -13.42887 -13.05364 -12.90002 -12.89637 -12.26507 -12.04663 -11.56990 -11.44389 -11.25789 -11.10653 -11.05383 -10.86219 -10.69247 -10.57392 -10.47578 -10.32768 -9.59581 -9.38349 -9.29165 -8.45387 -8.29230 -6.85559 -6.10843 -4.14086 1.71054 2.00851 3.26248 3.33874 3.37872 4.05965 4.14871 4.41844 4.91261 5.01359 5.16388 5.17264 5.26178 5.39001 5.44686 5.55186 5.59771 5.67480 5.75194 5.83592 5.91764 5.95367 6.04644 6.13907 6.18931 6.24302 6.29393 6.29548 6.35759 6.47346 6.69493 6.74655 6.87329 7.01167 7.25710 7.48421 7.61868 7.80313 7.96886 8.19487 8.36973 8.92033 9.50852 11.00865 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.005175 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.990247 B = 5409.414550 C = 6626.518495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.040 4.040 4 C -0.191 4.191 5 C -0.069 4.069 6 C -0.175 4.175 7 C -0.074 4.074 8 C -0.148 4.148 9 C 0.234 3.766 10 N -0.739 5.739 11 C 0.126 3.874 12 C 0.013 3.987 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.198 4.198 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -5.055 -16.246 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.040 4.040 4 C -0.212 4.212 5 C -0.088 4.088 6 C -0.180 4.180 7 C -0.112 4.112 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.365 5.365 11 C 0.002 3.998 12 C -0.024 4.024 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.221 4.221 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.232 0.768 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.793 -5.018 -15.899 16.768 hybrid contribution -0.003 -0.010 1.001 1.002 sum -1.796 -5.028 -14.898 15.825 Atomic orbital electron populations 1.21725 0.94951 1.01251 1.02281 1.20521 0.96037 0.93229 1.02362 1.19539 0.96580 0.95203 0.92724 1.20564 1.08067 0.95738 0.96795 1.20631 0.97491 0.94355 0.96334 1.19293 1.09756 0.97082 0.91882 1.20293 0.95794 0.93075 1.02008 1.21767 0.95297 1.01220 1.02235 1.17768 0.92078 0.91403 0.86066 1.45293 1.71756 1.16317 1.03146 1.21669 0.99041 0.96652 0.82391 1.19280 0.97394 0.94643 0.91115 1.21074 1.44845 0.99628 0.90435 0.92322 1.25002 0.94985 0.94891 0.99411 1.69968 1.45421 1.10985 1.26819 0.86473 0.77925 0.79816 0.83439 1.19622 1.20921 1.20915 1.20514 1.09213 0.94325 0.98017 0.92786 0.92408 0.92714 0.91446 0.91246 0.87272 0.86958 0.91578 0.91711 0.92837 0.92815 0.92394 0.76788 0.93424 0.93400 0.96044 0.96068 0.92887 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.90 37.16 0.37 -1.16 16 2 C -0.08 -0.97 6.06 -27.88 -0.17 -1.14 16 3 C -0.04 -0.56 5.13 -104.65 -0.54 -1.10 16 4 C -0.19 -2.56 9.70 -39.55 -0.38 -2.95 16 5 C -0.07 -0.94 9.68 -39.61 -0.38 -1.32 16 6 C -0.18 -2.61 5.15 -104.42 -0.54 -3.15 16 7 C -0.07 -0.96 5.50 -27.88 -0.15 -1.11 16 8 C -0.15 -1.82 9.89 37.16 0.37 -1.46 16 9 C 0.23 3.95 6.63 -83.79 -0.56 3.39 16 10 N -0.74 -13.42 5.63 -58.63 -0.33 -13.75 16 11 C 0.13 2.60 4.85 -4.04 -0.02 2.58 16 12 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.20 -3.23 8.96 -39.38 -0.35 -3.58 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 30 H 0.06 0.87 6.82 -51.93 -0.35 0.52 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.40 6.96 6.58 -40.82 -0.27 6.69 16 35 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 36 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.12 2.00 6.74 -52.49 -0.35 1.64 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -28.90 328.44 -9.40 -38.30 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.83 Total: 3.73 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.91 Total: -23.95 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.41 Total: -39.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.90 -9.40 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689622123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.573 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds