Wall clock time and date at job start Mon Mar 30 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47075 * 2 1 4 4 C 1.38306 * 119.96204 * 270.27370 * 3 2 1 5 5 C 1.38265 * 120.14784 * 180.27606 * 4 3 2 6 6 C 1.38133 * 120.07407 * 359.44555 * 5 4 3 7 7 C 1.50698 * 120.03523 * 180.25285 * 6 5 4 8 8 C 1.53001 * 109.47011 * 264.99899 * 7 6 5 9 9 C 1.38886 * 119.92263 * 0.28038 * 6 5 4 10 10 N 1.39676 * 120.07123 * 180.02562 * 9 6 5 11 11 C 1.46500 * 119.99636 * 179.97438 * 10 9 6 12 12 C 1.53006 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08008 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47023 * 120.00475 * 17 15 13 20 20 H 1.48500 * 109.46964 * 240.00269 * 17 15 13 21 21 C 1.38089 * 119.96065 * 89.99699 * 3 2 1 22 22 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47199 * 300.00266 * 1 2 3 24 24 H 1.09000 * 109.46839 * 60.00307 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99734 * 2 1 3 26 26 H 1.08999 * 109.46691 * 120.00224 * 2 1 3 27 27 H 1.08001 * 119.92853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96572 * 179.72711 * 5 4 3 29 29 H 1.08998 * 109.47123 * 25.00408 * 7 6 5 30 30 H 1.08998 * 109.46797 * 145.00355 * 7 6 5 31 31 H 1.08998 * 109.46968 * 60.00561 * 8 7 6 32 32 H 1.08997 * 109.46878 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47592 * 300.00221 * 8 7 6 34 34 H 0.96995 * 120.00298 * 359.97438 * 10 9 6 35 35 H 1.09004 * 109.47369 * 299.99458 * 11 10 9 36 36 H 1.09002 * 109.47776 * 60.00078 * 11 10 9 37 37 H 1.09000 * 109.47113 * 299.99496 * 12 11 10 38 38 H 1.08999 * 109.46999 * 60.00077 * 12 11 10 39 39 H 0.96993 * 120.00115 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.03755 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2572 2.0740 -1.1982 5 6 2.7235 3.3756 -1.2027 6 6 2.9555 4.0319 -0.0096 7 6 3.4582 5.4526 -0.0156 8 6 4.9832 5.4544 0.1085 9 6 2.7253 3.3809 1.1954 10 7 2.9583 4.0418 2.4036 11 6 2.7144 3.3536 3.6738 12 6 3.0466 4.2932 4.8348 13 6 2.7952 3.5856 6.1413 14 1 2.4349 2.5673 6.1435 15 6 3.0260 4.2376 7.3340 16 7 3.4652 5.4772 7.3315 17 14 2.7150 3.3602 8.9536 18 1 2.2280 1.9833 8.6851 19 1 3.9781 3.2950 9.7318 20 1 1.6923 4.1047 9.7315 21 6 2.2622 2.0710 1.1964 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0720 1.5648 -2.1325 28 1 2.9023 3.8813 -2.1401 29 1 3.1690 5.9364 -0.9485 30 1 3.0247 5.9949 0.8247 31 1 5.4167 4.9120 -0.7317 32 1 5.3468 6.4819 0.1047 33 1 5.2725 4.9705 1.0414 34 1 3.2815 4.9563 2.4018 35 1 1.6664 3.0595 3.7324 36 1 3.3447 2.4663 3.7332 37 1 4.0947 4.5869 4.7761 38 1 2.4166 5.1807 4.7756 39 1 3.6273 5.9360 8.1706 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689622123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:31 Heat of formation + Delta-G solvation = -25.880262 kcal Electronic energy + Delta-G solvation = -17526.277185 eV Core-core repulsion = 14917.589497 eV Total energy + Delta-G solvation = -2608.687688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74182 -37.37180 -35.99990 -34.87538 -33.18071 -32.03757 -29.89548 -28.90707 -26.46820 -25.30322 -23.60945 -23.03480 -22.04711 -21.03878 -18.62956 -17.67046 -17.03532 -16.48483 -16.27277 -15.85640 -15.35697 -15.04485 -14.70798 -14.65795 -14.21031 -14.06398 -14.02299 -13.94833 -13.21792 -13.12368 -12.98378 -12.67151 -12.49941 -12.33897 -12.20409 -12.12031 -11.79362 -11.70622 -11.56781 -11.40857 -11.33880 -10.81336 -10.57672 -9.41692 -8.26387 -8.17090 -6.37845 0.57969 0.83962 1.39520 1.39839 1.53309 2.35527 2.69762 3.00628 3.08356 3.88636 3.99742 4.13339 4.22828 4.33245 4.43056 4.49183 4.53949 4.56697 4.60050 4.71201 4.74060 4.78462 4.85965 4.95417 5.06144 5.10590 5.11306 5.18342 5.27273 5.35824 5.39397 5.44261 5.55019 5.57757 5.69804 5.76692 5.89642 6.09014 6.16451 6.53461 6.76543 6.93083 7.32188 8.86241 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.005175 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.990247 B = 5409.414550 C = 6626.518495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.045 4.045 4 C -0.186 4.186 5 C -0.070 4.070 6 C -0.180 4.180 7 C -0.074 4.074 8 C -0.143 4.143 9 C 0.206 3.794 10 N -0.745 5.745 11 C 0.150 3.850 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.218 4.218 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.397 0.603 35 H 0.044 0.956 36 H 0.044 0.956 37 H -0.001 1.001 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -6.237 -17.927 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.046 4.046 4 C -0.206 4.206 5 C -0.089 4.089 6 C -0.184 4.184 7 C -0.111 4.111 8 C -0.201 4.201 9 C 0.102 3.898 10 N -0.374 5.374 11 C 0.026 3.974 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.241 4.241 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.232 0.768 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.222 -6.217 -17.621 18.817 hybrid contribution 0.127 0.351 1.396 1.445 sum -2.095 -5.866 -16.225 17.380 Atomic orbital electron populations 1.21702 0.94195 1.02332 1.01668 1.20581 0.96608 0.91684 1.03217 1.19866 0.95986 0.96474 0.92247 1.20969 1.06336 0.95741 0.97523 1.21021 0.96422 0.94550 0.96876 1.19579 1.09275 0.97966 0.91622 1.20333 0.95976 0.92086 1.02707 1.21725 0.94989 1.02030 1.01320 1.18030 0.93746 0.91981 0.86081 1.45024 1.73195 1.16341 1.02827 1.21153 0.98523 0.95366 0.82364 1.19097 0.95366 0.94527 0.92526 1.21496 1.44897 1.00071 0.91689 0.91871 1.25947 0.94519 0.95609 1.03379 1.70090 1.46316 1.12569 1.28008 0.85346 0.77983 0.78929 0.78484 1.18533 1.20288 1.20274 1.20619 1.10376 0.94502 0.98604 0.90895 0.94140 0.92180 0.89318 0.91672 0.84387 0.83938 0.89215 0.92912 0.91870 0.91352 0.94786 0.76788 0.93805 0.93788 0.98304 0.98332 0.92595 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.90 71.98 0.71 -2.02 16 2 C -0.08 -1.77 6.06 29.85 0.18 -1.58 16 3 C -0.05 -1.21 5.13 -19.88 -0.10 -1.31 16 4 C -0.19 -4.42 9.70 22.29 0.22 -4.21 16 5 C -0.07 -1.70 9.68 22.25 0.22 -1.49 16 6 C -0.18 -5.17 5.15 -19.73 -0.10 -5.27 16 7 C -0.07 -1.83 5.50 29.85 0.16 -1.66 16 8 C -0.14 -3.41 9.89 71.98 0.71 -2.70 16 9 C 0.21 7.05 6.63 38.21 0.25 7.30 16 10 N -0.75 -28.29 5.63 -339.40 -1.91 -30.20 16 11 C 0.15 6.51 4.85 86.38 0.42 6.93 16 12 C 0.02 1.17 5.09 29.85 0.15 1.33 16 13 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 17 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C -0.22 -7.19 8.96 22.40 0.20 -6.99 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 26 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 27 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 28 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 30 H 0.05 1.43 6.82 -2.39 -0.02 1.41 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.40 14.72 6.58 -92.71 -0.61 14.11 16 35 H 0.04 1.90 7.95 -2.39 -0.02 1.88 16 36 H 0.04 1.91 7.95 -2.39 -0.02 1.89 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.11 3.69 6.74 -2.91 -0.02 3.67 16 Total: -1.00 -62.85 328.44 4.50 -58.35 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.38 Total: 23.07 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.72 Total: -41.47 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.63 Total: -85.85 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.85 4.50 -58.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689622123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.468 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds