Wall clock time and date at job start Mon Mar 30 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47450 * 2 1 4 4 C 1.38316 * 119.96362 * 270.02716 * 3 2 1 5 5 C 1.38262 * 120.14710 * 179.76589 * 4 3 2 6 6 C 1.38118 * 120.07695 * 0.46512 * 5 4 3 7 7 C 1.50706 * 120.03763 * 179.79349 * 6 5 4 8 8 C 1.53002 * 109.46925 * 264.72064 * 7 6 5 9 9 C 1.38886 * 119.92677 * 359.50938 * 6 5 4 10 10 N 1.39675 * 120.08189 * 180.23251 * 9 6 5 11 11 C 1.46495 * 120.00747 * 179.97438 * 10 9 6 12 12 H 1.09005 * 109.46469 * 35.00375 * 11 10 9 13 13 C 1.53000 * 109.47446 * 275.00595 * 11 10 9 14 14 C 1.50700 * 109.47322 * 154.99917 * 11 10 9 15 15 H 1.08002 * 119.99816 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00160 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99799 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00154 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47154 * 59.99864 * 18 16 14 20 20 H 1.48504 * 109.47243 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46974 * 299.99890 * 18 16 14 22 22 C 1.38077 * 119.96452 * 89.99745 * 3 2 1 23 23 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46884 * 300.00103 * 1 2 3 25 25 H 1.09001 * 109.47173 * 59.99486 * 1 2 3 26 26 H 1.09001 * 109.46884 * 239.99897 * 2 1 3 27 27 H 1.08998 * 109.47428 * 120.00064 * 2 1 3 28 28 H 1.07998 * 119.91916 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.95958 * 180.22670 * 5 4 3 30 30 H 1.09000 * 109.47318 * 24.71298 * 7 6 5 31 31 H 1.09000 * 109.47161 * 144.71928 * 7 6 5 32 32 H 1.09004 * 109.46930 * 299.99901 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99503 * 8 7 6 34 34 H 1.08992 * 109.47060 * 179.97438 * 8 7 6 35 35 H 0.97000 * 119.99157 * 0.02562 * 10 9 6 36 36 H 1.08994 * 109.46974 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46543 * 299.99726 * 13 11 10 38 38 H 1.09003 * 109.46860 * 59.99557 * 13 11 10 39 39 H 0.97002 * 119.99753 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03493 * 0.03161 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1983 5 6 2.7185 3.3774 -1.2027 6 6 2.9556 4.0318 -0.0098 7 6 3.4574 5.4529 -0.0157 8 6 4.9824 5.4557 0.1083 9 6 2.7254 3.3809 1.1953 10 7 2.9595 4.0412 2.4036 11 6 2.7156 3.3533 3.6738 12 1 2.9670 2.2977 3.5692 13 6 1.2398 3.4909 4.0533 14 6 3.5709 3.9690 4.7510 15 1 4.2300 4.7909 4.5132 16 6 3.5122 3.4831 6.0399 17 7 2.7100 2.4818 6.3292 18 14 4.5718 4.2468 7.3752 19 1 4.2285 5.6845 7.5178 20 1 4.3256 3.5484 8.6625 21 1 6.0043 4.1141 7.0068 22 6 2.2622 2.0710 1.1962 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0815 1.5614 -2.1325 29 1 2.8934 3.8844 -2.1402 30 1 3.1679 5.9366 -0.9486 31 1 3.0236 5.9949 0.8246 32 1 5.2720 4.9719 1.0412 33 1 5.4162 4.9135 -0.7320 34 1 5.3454 6.4834 0.1036 35 1 3.2829 4.9558 2.4017 36 1 1.0584 2.9786 4.9981 37 1 0.9886 4.5464 4.1577 38 1 0.6213 3.0455 3.2741 39 1 2.6684 2.1402 7.2361 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689627207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:34 Heat of formation + Delta-G solvation = -4.101757 kcal Electronic energy + Delta-G solvation = -18149.701738 eV Core-core repulsion = 15541.958436 eV Total energy + Delta-G solvation = -2607.743302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29489 -35.85783 -34.66401 -32.57632 -31.98444 -29.64513 -28.43257 -27.02735 -25.22442 -24.06235 -22.15091 -21.86045 -19.96069 -19.73263 -16.94472 -15.77258 -15.52580 -14.99089 -14.55856 -14.07264 -13.72734 -13.42330 -13.31162 -12.95157 -12.84481 -12.72456 -12.23153 -11.97386 -11.82334 -11.39329 -11.26339 -11.05836 -11.00632 -10.90660 -10.71195 -10.65639 -10.46911 -10.31982 -10.18694 -9.93873 -9.23171 -9.00713 -8.48465 -8.00527 -6.43331 -6.15255 -4.23520 1.99860 2.32721 3.24076 3.29028 3.31033 4.26477 4.44468 4.62818 5.15588 5.17348 5.23804 5.36718 5.38862 5.62471 5.65950 5.73981 5.82206 5.89937 5.98037 6.05388 6.14679 6.17362 6.21895 6.40591 6.44928 6.49123 6.59862 6.66709 6.75764 6.95379 7.04498 7.08071 7.16222 7.28701 7.41247 7.60086 7.70981 7.87367 8.09189 8.41074 8.74327 8.94282 9.43668 10.90319 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.006895 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.599945 B = 4060.124971 C = 5142.640144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.040 4.040 4 C -0.201 4.201 5 C -0.069 4.069 6 C -0.188 4.188 7 C -0.070 4.070 8 C -0.147 4.147 9 C 0.244 3.756 10 N -0.724 5.724 11 C 0.268 3.732 12 H 0.039 0.961 13 C -0.152 4.152 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.198 4.198 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.389 0.611 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.013 0.987 39 H 0.264 0.736 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -0.001 -11.753 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.041 4.041 4 C -0.222 4.222 5 C -0.088 4.088 6 C -0.193 4.193 7 C -0.107 4.107 8 C -0.205 4.205 9 C 0.134 3.866 10 N -0.347 5.347 11 C 0.165 3.835 12 H 0.057 0.943 13 C -0.211 4.211 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.221 4.221 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.295 -0.221 -11.335 11.411 hybrid contribution 0.645 0.732 0.810 1.268 sum -0.650 0.511 -10.524 10.557 Atomic orbital electron populations 1.21712 0.95138 1.01033 1.02209 1.20503 0.95913 0.93496 1.02163 1.19514 0.96714 0.95048 0.92809 1.20463 1.09394 0.95775 0.96569 1.20546 0.97795 0.94343 0.96113 1.19229 1.10991 0.97034 0.92040 1.20234 0.95602 0.93373 1.01538 1.21767 0.95555 1.00800 1.02351 1.17820 0.91088 0.91357 0.86311 1.45617 1.69756 1.15806 1.03497 1.18683 0.92508 0.93340 0.78924 0.94306 1.22174 0.97642 0.99530 1.01704 1.21177 1.23916 1.18332 0.93396 0.92295 1.24863 0.95471 0.94873 0.98431 1.69871 1.37095 1.25070 1.20416 0.86524 0.80705 0.79314 0.80678 1.20179 1.21104 1.20182 1.20617 1.09025 0.94456 0.98006 0.92969 0.92377 0.92849 0.91687 0.91279 0.87690 0.87428 0.91988 0.91958 0.92205 0.92976 0.93209 0.77688 0.89294 0.95381 0.96812 0.92559 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.08 -1.17 6.06 -27.89 -0.17 -1.34 16 3 C -0.04 -0.67 5.13 -104.65 -0.54 -1.21 16 4 C -0.20 -3.17 9.70 -39.54 -0.38 -3.55 16 5 C -0.07 -1.09 9.67 -39.62 -0.38 -1.47 16 6 C -0.19 -3.23 5.15 -104.42 -0.54 -3.77 16 7 C -0.07 -1.03 5.50 -27.88 -0.15 -1.18 16 8 C -0.15 -2.06 9.89 37.16 0.37 -1.69 16 9 C 0.24 4.82 6.62 -83.79 -0.55 4.27 16 10 N -0.72 -15.38 5.14 -53.29 -0.27 -15.65 16 11 C 0.27 6.58 2.25 -69.08 -0.16 6.42 16 12 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 13 C -0.15 -3.65 9.21 37.16 0.34 -3.31 16 14 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.20 -3.88 8.50 -39.38 -0.33 -4.22 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.10 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.06 0.94 6.82 -51.93 -0.35 0.59 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.39 7.84 6.65 -40.82 -0.27 7.57 16 36 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.01 0.29 7.72 -51.93 -0.40 -0.11 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.12 2.61 6.12 -52.48 -0.32 2.29 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -27.00 322.18 -8.94 -35.94 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.60 Total: 8.17 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.53 Total: -25.17 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.35 Total: -39.46 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.00 -8.94 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689627207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.835 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds