Wall clock time and date at job start Mon Mar 30 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47450 * 2 1 4 4 C 1.38316 * 119.96362 * 270.02716 * 3 2 1 5 5 C 1.38262 * 120.14710 * 179.76589 * 4 3 2 6 6 C 1.38118 * 120.07695 * 0.46512 * 5 4 3 7 7 C 1.50706 * 120.03763 * 179.79349 * 6 5 4 8 8 C 1.53002 * 109.46925 * 264.72064 * 7 6 5 9 9 C 1.38886 * 119.92677 * 359.50938 * 6 5 4 10 10 N 1.39675 * 120.08189 * 180.23251 * 9 6 5 11 11 C 1.46495 * 120.00747 * 179.97438 * 10 9 6 12 12 H 1.09005 * 109.46469 * 35.00375 * 11 10 9 13 13 C 1.53000 * 109.47446 * 275.00595 * 11 10 9 14 14 C 1.50700 * 109.47322 * 154.99917 * 11 10 9 15 15 H 1.08002 * 119.99816 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00160 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99799 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00154 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47154 * 59.99864 * 18 16 14 20 20 H 1.48504 * 109.47243 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46974 * 299.99890 * 18 16 14 22 22 C 1.38077 * 119.96452 * 89.99745 * 3 2 1 23 23 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46884 * 300.00103 * 1 2 3 25 25 H 1.09001 * 109.47173 * 59.99486 * 1 2 3 26 26 H 1.09001 * 109.46884 * 239.99897 * 2 1 3 27 27 H 1.08998 * 109.47428 * 120.00064 * 2 1 3 28 28 H 1.07998 * 119.91916 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.95958 * 180.22670 * 5 4 3 30 30 H 1.09000 * 109.47318 * 24.71298 * 7 6 5 31 31 H 1.09000 * 109.47161 * 144.71928 * 7 6 5 32 32 H 1.09004 * 109.46930 * 299.99901 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99503 * 8 7 6 34 34 H 1.08992 * 109.47060 * 179.97438 * 8 7 6 35 35 H 0.97000 * 119.99157 * 0.02562 * 10 9 6 36 36 H 1.08994 * 109.46974 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46543 * 299.99726 * 13 11 10 38 38 H 1.09003 * 109.46860 * 59.99557 * 13 11 10 39 39 H 0.97002 * 119.99753 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03493 * 0.03161 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1983 5 6 2.7185 3.3774 -1.2027 6 6 2.9556 4.0318 -0.0098 7 6 3.4574 5.4529 -0.0157 8 6 4.9824 5.4557 0.1083 9 6 2.7254 3.3809 1.1953 10 7 2.9595 4.0412 2.4036 11 6 2.7156 3.3533 3.6738 12 1 2.9670 2.2977 3.5692 13 6 1.2398 3.4909 4.0533 14 6 3.5709 3.9690 4.7510 15 1 4.2300 4.7909 4.5132 16 6 3.5122 3.4831 6.0399 17 7 2.7100 2.4818 6.3292 18 14 4.5718 4.2468 7.3752 19 1 4.2285 5.6845 7.5178 20 1 4.3256 3.5484 8.6625 21 1 6.0043 4.1141 7.0068 22 6 2.2622 2.0710 1.1962 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0815 1.5614 -2.1325 29 1 2.8934 3.8844 -2.1402 30 1 3.1679 5.9366 -0.9486 31 1 3.0236 5.9949 0.8246 32 1 5.2720 4.9719 1.0412 33 1 5.4162 4.9135 -0.7320 34 1 5.3454 6.4834 0.1036 35 1 3.2829 4.9558 2.4017 36 1 1.0584 2.9786 4.9981 37 1 0.9886 4.5464 4.1577 38 1 0.6213 3.0455 3.2741 39 1 2.6684 2.1402 7.2361 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689627207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:34 Heat of formation + Delta-G solvation = -16.685829 kcal Electronic energy + Delta-G solvation = -18150.247424 eV Core-core repulsion = 15541.958436 eV Total energy + Delta-G solvation = -2608.288988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68332 -37.47868 -36.04455 -34.40562 -33.13561 -31.37951 -29.78059 -28.52317 -27.26940 -25.24109 -23.75999 -23.00276 -21.63111 -21.15784 -18.72540 -17.28948 -17.23048 -16.55025 -16.06469 -15.33228 -15.21203 -14.91749 -14.66769 -14.33470 -14.12565 -13.96546 -13.83647 -13.63318 -13.15920 -12.97695 -12.93498 -12.81055 -12.45510 -12.28394 -12.21469 -12.16126 -12.02380 -11.76938 -11.57151 -11.34401 -11.09043 -10.76088 -10.46223 -9.34226 -8.21811 -7.95637 -6.35550 0.65333 0.94997 1.40660 1.41914 1.49850 2.35816 2.98597 3.07240 3.12081 3.94887 4.05448 4.18723 4.25802 4.39658 4.55968 4.60063 4.63423 4.71521 4.76838 4.78658 4.84579 4.92748 5.00077 5.07680 5.10686 5.11043 5.16611 5.24314 5.32229 5.40233 5.41787 5.48846 5.61619 5.68130 5.81492 5.86060 5.97367 6.08923 6.30976 6.56881 6.87874 7.24804 7.38013 8.85441 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.006895 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.599945 B = 4060.124971 C = 5142.640144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.046 4.046 4 C -0.193 4.193 5 C -0.068 4.068 6 C -0.188 4.188 7 C -0.069 4.069 8 C -0.142 4.142 9 C 0.214 3.786 10 N -0.730 5.730 11 C 0.280 3.720 12 H 0.005 0.995 13 C -0.136 4.136 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.225 4.225 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.392 0.608 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 0.703 -14.060 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.046 4.046 4 C -0.213 4.213 5 C -0.086 4.086 6 C -0.193 4.193 7 C -0.106 4.106 8 C -0.199 4.199 9 C 0.107 3.893 10 N -0.356 5.356 11 C 0.176 3.824 12 H 0.022 0.978 13 C -0.195 4.195 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.248 4.248 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.896 0.480 -13.685 13.723 hybrid contribution 0.500 0.450 1.389 1.544 sum -0.397 0.930 -12.296 12.338 Atomic orbital electron populations 1.21680 0.94089 1.02306 1.01574 1.20569 0.96771 0.91929 1.02833 1.19841 0.96141 0.96353 0.92306 1.20890 1.07421 0.95882 0.97139 1.20992 0.96382 0.94432 0.96835 1.19573 1.10079 0.98227 0.91465 1.20291 0.95889 0.91888 1.02572 1.21715 0.95093 1.01953 1.01179 1.18115 0.92701 0.91763 0.86695 1.45253 1.71435 1.15877 1.03011 1.18267 0.92206 0.91651 0.80286 0.97766 1.21972 0.97872 0.99008 1.00626 1.21503 1.24333 1.18510 0.94311 0.92265 1.25684 0.96609 0.95251 1.00576 1.70003 1.38253 1.26110 1.20863 0.85502 0.78948 0.78697 0.77837 1.19353 1.20680 1.19807 1.20600 1.11106 0.95012 0.98071 0.90788 0.94605 0.91823 0.89085 0.92507 0.84418 0.83849 0.89217 0.92892 0.94991 0.92124 0.91107 0.77307 0.91531 0.95390 0.96219 0.92504 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.89 71.98 0.71 -2.66 16 2 C -0.08 -2.26 6.06 29.85 0.18 -2.08 16 3 C -0.05 -1.51 5.13 -19.88 -0.10 -1.61 16 4 C -0.19 -5.48 9.70 22.29 0.22 -5.26 16 5 C -0.07 -1.91 9.67 22.25 0.22 -1.70 16 6 C -0.19 -6.22 5.15 -19.74 -0.10 -6.32 16 7 C -0.07 -1.89 5.50 29.85 0.16 -1.73 16 8 C -0.14 -3.72 9.89 71.98 0.71 -3.01 16 9 C 0.21 8.65 6.62 38.21 0.25 8.91 16 10 N -0.73 -32.30 5.14 -322.51 -1.66 -33.96 16 11 C 0.28 14.48 2.25 44.25 0.10 14.58 16 12 H 0.00 0.27 6.48 -2.38 -0.02 0.25 16 13 C -0.14 -6.86 9.21 71.98 0.66 -6.20 16 14 C -0.55 -29.99 8.73 25.60 0.22 -29.77 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.02 1.03 5.30 84.65 0.45 1.48 16 17 N -0.91 -52.04 11.32 21.45 0.24 -51.79 16 18 Si 0.97 42.92 29.54 68.60 2.03 44.94 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.22 -9.17 8.50 22.40 0.19 -8.98 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 27 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 31 H 0.05 1.55 6.82 -2.39 -0.02 1.54 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.39 16.34 6.65 -92.71 -0.62 15.72 16 36 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.02 0.91 7.72 -2.39 -0.02 0.89 16 39 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.09 4.26 6.12 -2.91 -0.02 4.24 16 Total: -1.00 -59.96 322.18 4.87 -55.08 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.39 Total: 30.07 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 3.88 Total: -44.35 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.42 Total: -85.75 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -59.96 4.87 -55.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689627207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.396 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds