Wall clock time and date at job start Mon Mar 30 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46583 * 2 1 4 4 C 1.38304 * 119.96392 * 90.00270 * 3 2 1 5 5 C 1.38255 * 120.15312 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.07383 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.03578 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46686 * 265.01718 * 7 6 5 9 9 C 1.38885 * 119.92591 * 359.97438 * 6 5 4 10 10 N 1.39676 * 120.08010 * 179.97438 * 9 6 5 11 11 C 1.46491 * 120.00187 * 179.97438 * 10 9 6 12 12 H 1.08994 * 109.47507 * 324.99878 * 11 10 9 13 13 C 1.52996 * 109.47168 * 85.00322 * 11 10 9 14 14 C 1.50702 * 109.46957 * 204.99906 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38088 * 119.96381 * 270.23059 * 3 2 1 23 23 H 1.09003 * 109.46456 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47415 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47184 * 60.00428 * 1 2 3 26 26 H 1.09002 * 109.47427 * 240.00327 * 2 1 3 27 27 H 1.08991 * 109.47485 * 119.99815 * 2 1 3 28 28 H 1.08005 * 119.92305 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96797 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47664 * 25.02161 * 7 6 5 31 31 H 1.09005 * 109.46811 * 145.02258 * 7 6 5 32 32 H 1.09005 * 109.46894 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47348 * 299.99802 * 8 7 6 34 34 H 1.08997 * 109.47667 * 60.00493 * 8 7 6 35 35 H 0.97003 * 119.99593 * 0.02562 * 10 9 6 36 36 H 1.09001 * 109.47094 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.46851 * 299.99887 * 13 11 10 38 38 H 1.09003 * 109.47532 * 59.99962 * 13 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.03473 * 0.04443 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2625 2.0722 1.1982 5 6 2.7237 3.3755 1.2027 6 6 2.9556 4.0319 0.0097 7 6 3.4578 5.4528 0.0156 8 6 2.2730 6.4129 -0.1076 9 6 2.7255 3.3809 -1.1954 10 7 2.9584 4.0418 -2.4037 11 6 2.7156 3.3533 -3.6738 12 1 2.9686 2.2983 -3.5694 13 6 1.2397 3.4887 -4.0533 14 6 3.5699 3.9705 -4.7510 15 1 4.2282 4.7931 -4.5132 16 6 3.5157 3.4810 -6.0389 17 7 2.7144 2.4792 -6.3283 18 14 4.5802 4.2411 -7.3724 19 1 5.3870 5.3449 -6.7928 20 1 5.4872 3.2065 -7.9315 21 1 3.7134 4.7757 -8.4532 22 6 2.2575 2.0728 -1.1963 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 2.0815 1.5614 2.1325 29 1 2.9021 3.8814 2.1401 30 1 3.9875 5.6471 0.9482 31 1 4.1354 5.6021 -0.8250 32 1 2.6362 7.4406 -0.1037 33 1 1.7434 6.2186 -1.0402 34 1 1.5953 6.2636 0.7330 35 1 3.2817 4.9563 -2.4018 36 1 1.0591 2.9768 -4.9985 37 1 0.6218 3.0423 -3.2741 38 1 0.9866 4.5438 -4.1578 39 1 2.6760 2.1350 -7.2345 40 1 2.0733 1.5651 -2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689627208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:37 Heat of formation + Delta-G solvation = -4.216174 kcal Electronic energy + Delta-G solvation = -18157.771971 eV Core-core repulsion = 15550.023708 eV Total energy + Delta-G solvation = -2607.748263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.29619 -35.85940 -34.66617 -32.57821 -31.99087 -29.64802 -28.44059 -27.02147 -25.23431 -24.06616 -22.15660 -21.86062 -19.95238 -19.74401 -16.95431 -15.76345 -15.53263 -15.00195 -14.54866 -14.01310 -13.72909 -13.49923 -13.36636 -13.13961 -12.75724 -12.36623 -12.23855 -12.19269 -11.87566 -11.36598 -11.26496 -11.06617 -11.04149 -10.89606 -10.69818 -10.65924 -10.43391 -10.33165 -10.19609 -9.94239 -9.23519 -8.99116 -8.49409 -8.00388 -6.43513 -6.15781 -4.23847 1.99760 2.32737 3.21528 3.29727 3.33073 4.26527 4.44055 4.62994 5.15471 5.17215 5.23503 5.36060 5.37987 5.62205 5.65586 5.73062 5.81875 5.89593 5.97387 6.04867 6.13872 6.17195 6.21091 6.40106 6.44429 6.47403 6.59324 6.66535 6.75535 6.95341 7.04411 7.08196 7.16010 7.28664 7.41096 7.60237 7.70833 7.87388 8.08894 8.40923 8.74505 8.94313 9.43462 10.89832 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.006771 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.216258 B = 4134.311537 C = 5111.349680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.040 4.040 4 C -0.201 4.201 5 C -0.069 4.069 6 C -0.188 4.188 7 C -0.071 4.071 8 C -0.146 4.146 9 C 0.244 3.756 10 N -0.724 5.724 11 C 0.267 3.733 12 H 0.039 0.961 13 C -0.151 4.151 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.198 4.198 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.389 0.611 36 H 0.088 0.912 37 H 0.013 0.987 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 0.321 11.783 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.041 4.041 4 C -0.222 4.222 5 C -0.088 4.088 6 C -0.193 4.193 7 C -0.108 4.108 8 C -0.204 4.204 9 C 0.134 3.866 10 N -0.347 5.347 11 C 0.165 3.835 12 H 0.057 0.943 13 C -0.210 4.210 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.221 4.221 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.148 0.108 11.371 11.572 hybrid contribution 0.648 0.704 -0.821 1.261 sum -1.500 0.812 10.549 10.686 Atomic orbital electron populations 1.21713 0.95144 1.01031 1.02204 1.20504 0.95909 0.93495 1.02167 1.19516 0.96736 0.95027 0.92808 1.20459 1.09347 0.95818 0.96570 1.20547 0.97854 0.94284 0.96115 1.19230 1.11321 0.96697 0.92039 1.20238 0.97319 0.91614 1.01656 1.21758 0.98372 0.98052 1.02191 1.17819 0.91093 0.91352 0.86312 1.45617 1.69676 1.15889 1.03493 1.18691 0.92551 0.93334 0.78953 0.94324 1.22166 0.97604 0.99525 1.01672 1.21257 1.23894 1.18125 0.93437 0.92200 1.24871 0.95496 0.94868 0.98457 1.69892 1.37190 1.25062 1.20278 0.86411 0.80175 0.79167 0.81489 1.19764 1.20858 1.20862 1.20618 1.08984 0.94495 0.98004 0.92972 0.92853 0.92380 0.91276 0.91680 0.87691 0.87427 0.91952 0.91845 0.93185 0.92405 0.92977 0.77680 0.89320 0.96810 0.95381 0.92676 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.08 -1.17 6.06 -27.88 -0.17 -1.34 16 3 C -0.04 -0.67 5.13 -104.65 -0.54 -1.21 16 4 C -0.20 -3.17 9.70 -39.55 -0.38 -3.55 16 5 C -0.07 -1.09 9.68 -39.61 -0.38 -1.47 16 6 C -0.19 -3.23 5.15 -104.42 -0.54 -3.76 16 7 C -0.07 -1.04 5.50 -27.88 -0.15 -1.20 16 8 C -0.15 -2.00 9.89 37.16 0.37 -1.64 16 9 C 0.24 4.82 6.62 -83.79 -0.55 4.27 16 10 N -0.72 -15.38 5.14 -53.30 -0.27 -15.65 16 11 C 0.27 6.56 2.25 -69.09 -0.16 6.40 16 12 H 0.04 1.04 6.50 -51.93 -0.34 0.71 16 13 C -0.15 -3.62 9.20 37.16 0.34 -3.28 16 14 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 17 N -0.89 -24.42 11.33 55.43 0.63 -23.79 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.20 -3.88 8.49 -39.38 -0.33 -4.21 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 27 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.10 1.42 8.06 -52.48 -0.42 0.99 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.06 0.97 6.82 -51.93 -0.35 0.62 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 7.85 6.65 -40.82 -0.27 7.57 16 36 H 0.09 2.31 6.08 -51.93 -0.32 2.00 16 37 H 0.01 0.29 7.67 -51.93 -0.40 -0.10 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.12 2.61 6.09 -52.48 -0.32 2.29 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -27.05 322.10 -8.94 -35.99 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.60 Total: 8.03 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -2.53 Total: -25.11 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.05 -8.94 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689627208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.771 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds