Wall clock time and date at job start Mon Mar 30 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46583 * 2 1 4 4 C 1.38304 * 119.96392 * 90.00270 * 3 2 1 5 5 C 1.38255 * 120.15312 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.07383 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.03578 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46686 * 265.01718 * 7 6 5 9 9 C 1.38885 * 119.92591 * 359.97438 * 6 5 4 10 10 N 1.39676 * 120.08010 * 179.97438 * 9 6 5 11 11 C 1.46491 * 120.00187 * 179.97438 * 10 9 6 12 12 H 1.08994 * 109.47507 * 324.99878 * 11 10 9 13 13 C 1.52996 * 109.47168 * 85.00322 * 11 10 9 14 14 C 1.50702 * 109.46957 * 204.99906 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38088 * 119.96381 * 270.23059 * 3 2 1 23 23 H 1.09003 * 109.46456 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47415 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47184 * 60.00428 * 1 2 3 26 26 H 1.09002 * 109.47427 * 240.00327 * 2 1 3 27 27 H 1.08991 * 109.47485 * 119.99815 * 2 1 3 28 28 H 1.08005 * 119.92305 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96797 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47664 * 25.02161 * 7 6 5 31 31 H 1.09005 * 109.46811 * 145.02258 * 7 6 5 32 32 H 1.09005 * 109.46894 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47348 * 299.99802 * 8 7 6 34 34 H 1.08997 * 109.47667 * 60.00493 * 8 7 6 35 35 H 0.97003 * 119.99593 * 0.02562 * 10 9 6 36 36 H 1.09001 * 109.47094 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.46851 * 299.99887 * 13 11 10 38 38 H 1.09003 * 109.47532 * 59.99962 * 13 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.03473 * 0.04443 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2625 2.0722 1.1982 5 6 2.7237 3.3755 1.2027 6 6 2.9556 4.0319 0.0097 7 6 3.4578 5.4528 0.0156 8 6 2.2730 6.4129 -0.1076 9 6 2.7255 3.3809 -1.1954 10 7 2.9584 4.0418 -2.4037 11 6 2.7156 3.3533 -3.6738 12 1 2.9686 2.2983 -3.5694 13 6 1.2397 3.4887 -4.0533 14 6 3.5699 3.9705 -4.7510 15 1 4.2282 4.7931 -4.5132 16 6 3.5157 3.4810 -6.0389 17 7 2.7144 2.4792 -6.3283 18 14 4.5802 4.2411 -7.3724 19 1 5.3870 5.3449 -6.7928 20 1 5.4872 3.2065 -7.9315 21 1 3.7134 4.7757 -8.4532 22 6 2.2575 2.0728 -1.1963 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 2.0815 1.5614 2.1325 29 1 2.9021 3.8814 2.1401 30 1 3.9875 5.6471 0.9482 31 1 4.1354 5.6021 -0.8250 32 1 2.6362 7.4406 -0.1037 33 1 1.7434 6.2186 -1.0402 34 1 1.5953 6.2636 0.7330 35 1 3.2817 4.9563 -2.4018 36 1 1.0591 2.9768 -4.9985 37 1 0.6218 3.0423 -3.2741 38 1 0.9866 4.5438 -4.1578 39 1 2.6760 2.1350 -7.2345 40 1 2.0733 1.5651 -2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689627208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:37 Heat of formation + Delta-G solvation = -16.843527 kcal Electronic energy + Delta-G solvation = -18158.319534 eV Core-core repulsion = 15550.023708 eV Total energy + Delta-G solvation = -2608.295826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68419 -37.47984 -36.04431 -34.40685 -33.13707 -31.38268 -29.78472 -28.51274 -27.27868 -25.23992 -23.76706 -22.99771 -21.62452 -21.16593 -18.73692 -17.28463 -17.23523 -16.54718 -16.06583 -15.31320 -15.21896 -14.86390 -14.68572 -14.49890 -14.13321 -13.89398 -13.85508 -13.38107 -13.30362 -13.03724 -12.96920 -12.81240 -12.44309 -12.25331 -12.20572 -12.16196 -12.02953 -11.77419 -11.57454 -11.33878 -11.08072 -10.76634 -10.46620 -9.34060 -8.22443 -7.95726 -6.35941 0.65283 0.95033 1.39154 1.40772 1.52239 2.35595 2.98170 3.08080 3.11231 3.95007 4.05407 4.18338 4.25721 4.39654 4.55765 4.60339 4.63679 4.71272 4.76635 4.78604 4.84588 4.92922 5.00079 5.08014 5.10327 5.11225 5.16651 5.24208 5.31960 5.40242 5.41928 5.48703 5.61592 5.68054 5.81558 5.85840 5.97330 6.08702 6.30920 6.56872 6.87951 7.24736 7.37728 8.85251 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.006771 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.216258 B = 4134.311537 C = 5111.349680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.046 4.046 4 C -0.193 4.193 5 C -0.068 4.068 6 C -0.188 4.188 7 C -0.070 4.070 8 C -0.141 4.141 9 C 0.214 3.786 10 N -0.730 5.730 11 C 0.279 3.721 12 H 0.005 0.995 13 C -0.134 4.134 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.018 3.982 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.277 1.277 22 C -0.225 4.225 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.392 0.608 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 0.996 14.074 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.046 4.046 4 C -0.213 4.213 5 C -0.086 4.086 6 C -0.193 4.193 7 C -0.107 4.107 8 C -0.198 4.198 9 C 0.107 3.893 10 N -0.356 5.356 11 C 0.175 3.825 12 H 0.022 0.978 13 C -0.193 4.193 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.248 4.248 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.756 0.780 13.705 13.839 hybrid contribution 0.503 0.430 -1.398 1.547 sum -1.253 1.211 12.306 12.429 Atomic orbital electron populations 1.21680 0.94107 1.02303 1.01560 1.20571 0.96758 0.91926 1.02844 1.19842 0.96167 0.96333 0.92303 1.20886 1.07375 0.95915 0.97143 1.20991 0.96476 0.94352 0.96829 1.19575 1.10401 0.97889 0.91470 1.20294 0.97623 0.90302 1.02517 1.21707 0.97916 0.98962 1.01238 1.18112 0.92704 0.91769 0.86689 1.45254 1.71378 1.15937 1.03011 1.18275 0.92246 0.91646 0.80303 0.97761 1.21958 0.97830 0.98991 1.00566 1.21565 1.24312 1.18281 0.94365 0.92286 1.25690 0.96646 0.95241 1.00587 1.70016 1.38318 1.26082 1.20815 0.85388 0.78499 0.78388 0.78625 1.19125 1.20582 1.20268 1.20601 1.11039 0.95062 0.98071 0.90787 0.91837 0.94616 0.92494 0.89071 0.84417 0.83860 0.89307 0.93017 0.91128 0.94852 0.92061 0.77308 0.91578 0.96244 0.95404 0.92519 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.66 16 2 C -0.08 -2.25 6.06 29.85 0.18 -2.07 16 3 C -0.05 -1.51 5.13 -19.88 -0.10 -1.61 16 4 C -0.19 -5.47 9.70 22.29 0.22 -5.26 16 5 C -0.07 -1.92 9.68 22.25 0.22 -1.70 16 6 C -0.19 -6.22 5.15 -19.73 -0.10 -6.32 16 7 C -0.07 -1.92 5.50 29.85 0.16 -1.76 16 8 C -0.14 -3.59 9.89 71.98 0.71 -2.88 16 9 C 0.21 8.65 6.62 38.21 0.25 8.90 16 10 N -0.73 -32.31 5.14 -322.54 -1.66 -33.97 16 11 C 0.28 14.45 2.25 44.25 0.10 14.55 16 12 H 0.00 0.27 6.50 -2.39 -0.02 0.25 16 13 C -0.13 -6.79 9.20 71.98 0.66 -6.13 16 14 C -0.55 -29.93 8.73 25.60 0.22 -29.71 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.02 1.00 5.31 84.66 0.45 1.45 16 17 N -0.91 -51.98 11.33 21.45 0.24 -51.74 16 18 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 C -0.22 -9.16 8.49 22.40 0.19 -8.97 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 27 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.09 1.97 8.05 -2.39 -0.02 1.96 16 31 H 0.05 1.54 6.82 -2.38 -0.02 1.53 16 32 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 35 H 0.39 16.36 6.65 -92.71 -0.62 15.74 16 36 H 0.07 3.62 6.08 -2.39 -0.01 3.61 16 37 H 0.02 0.90 7.67 -2.39 -0.02 0.88 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 40 H 0.09 4.26 6.09 -2.91 -0.02 4.24 16 Total: -1.00 -60.00 322.10 4.87 -55.12 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.39 Total: 29.77 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.87 Total: -44.17 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.42 Total: -85.71 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.00 4.87 -55.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689627208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -59.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds