Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47341 * 2 1 4 4 N 1.46504 * 109.46979 * 120.00028 * 2 1 3 5 5 C 1.39688 * 119.99736 * 274.99458 * 4 2 1 6 6 C 1.39332 * 119.95092 * 0.02562 * 5 4 2 7 7 C 1.38484 * 120.42517 * 179.97438 * 6 5 4 8 8 C 1.37684 * 120.32274 * 359.97438 * 7 6 5 9 9 C 1.40753 * 119.89481 * 0.02671 * 8 7 6 10 10 C 1.41405 * 120.20906 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00178 * 24.32070 * 10 9 8 12 12 C 1.39930 * 119.99970 * 204.33004 * 10 9 8 13 13 N 1.30833 * 120.00110 * 17.72297 * 12 10 9 14 14 Si 1.86796 * 119.99968 * 197.73388 * 12 10 9 15 15 H 1.48505 * 109.47617 * 94.68659 * 14 12 10 16 16 H 1.48504 * 109.47200 * 214.68753 * 14 12 10 17 17 H 1.48497 * 109.47271 * 334.68457 * 14 12 10 18 18 C 1.38278 * 119.95104 * 179.72803 * 5 4 2 19 19 C 1.53003 * 109.46857 * 239.99610 * 2 1 3 20 20 C 1.53005 * 109.47095 * 300.00136 * 19 2 1 21 21 C 1.52999 * 109.47034 * 60.00476 * 19 2 1 22 22 C 1.53004 * 109.46821 * 180.02562 * 19 2 1 23 23 H 1.08992 * 109.47630 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46826 * 300.00503 * 1 2 3 25 25 H 1.09001 * 109.46768 * 60.00096 * 1 2 3 26 26 H 0.96996 * 120.00475 * 94.99748 * 4 2 1 27 27 H 1.08004 * 119.78957 * 0.02562 * 6 5 4 28 28 H 1.07996 * 119.83988 * 180.02562 * 7 6 5 29 29 H 1.08006 * 120.05297 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00223 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.16322 * 359.97438 * 18 5 4 32 32 H 1.08998 * 109.47024 * 59.99978 * 20 19 2 33 33 H 1.08997 * 109.46868 * 180.02562 * 20 19 2 34 34 H 1.09003 * 109.46974 * 300.00033 * 20 19 2 35 35 H 1.08992 * 109.47350 * 60.00124 * 21 19 2 36 36 H 1.08998 * 109.46956 * 180.02562 * 21 19 2 37 37 H 1.09006 * 109.46877 * 299.99607 * 21 19 2 38 38 H 1.09001 * 109.47088 * 60.00120 * 22 19 2 39 39 H 1.08998 * 109.46723 * 179.97438 * 22 19 2 40 40 H 1.08998 * 109.47040 * 299.99437 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1518 0.0063 2.3994 6 6 1.8197 1.3581 2.4609 7 6 1.9478 2.0584 3.6487 8 6 2.4045 1.4255 4.7830 9 6 2.7439 0.0603 4.7362 10 6 3.2142 -0.5961 5.8970 11 1 2.9593 -0.2137 6.8744 12 6 4.0101 -1.7410 5.7794 13 7 4.6051 -2.0105 4.6458 14 14 4.2227 -2.8848 7.2408 15 1 3.2323 -3.9880 7.1544 16 1 5.5958 -3.4504 7.2311 17 1 4.0092 -2.1254 8.4990 18 6 2.6074 -0.6479 3.5293 19 6 2.0400 -0.7214 -1.2492 20 6 1.5299 -2.1639 -1.2491 21 6 1.5300 -0.0001 -2.4985 22 6 3.5700 -0.7219 -1.2489 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2490 -1.6318 1.1527 27 1 1.4594 1.8628 1.5767 28 1 1.6873 3.1058 3.6858 29 1 2.5031 1.9760 5.7070 30 1 5.1571 -2.8040 4.5644 31 1 2.8602 -1.6969 3.4841 32 1 0.4399 -2.1638 -1.2491 33 1 1.8935 -2.6779 -2.1388 34 1 1.8932 -2.6777 -0.3591 35 1 1.8934 1.0274 -2.4986 36 1 1.8929 -0.5143 -3.3884 37 1 0.4399 -0.0001 -2.4985 38 1 3.9329 -1.2360 -0.3589 39 1 3.9333 -1.2362 -2.1386 40 1 3.9337 0.3056 -1.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695771453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = 0.099911 kcal Electronic energy + Delta-G solvation = -18263.218317 eV Core-core repulsion = 15655.657213 eV Total energy + Delta-G solvation = -2607.561104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.93001 -37.08735 -34.00575 -32.84132 -29.94054 -29.34749 -27.75182 -27.22616 -26.21485 -25.09796 -22.83439 -21.01681 -19.87868 -18.24218 -17.13364 -16.03331 -15.22994 -14.87002 -14.45359 -14.22801 -13.86758 -13.65700 -13.19024 -12.74026 -12.58866 -12.11291 -12.10476 -12.02043 -11.73690 -11.69242 -11.44271 -11.19033 -11.11895 -11.01270 -10.63744 -10.62627 -10.40848 -10.30725 -10.06356 -9.54314 -9.35670 -9.17929 -8.68506 -7.24734 -6.67932 -6.06534 -4.25868 2.90736 3.12687 3.16794 3.29426 3.39940 4.01492 4.37711 4.77516 4.82882 4.95902 5.07049 5.52212 5.57766 5.66317 5.71658 5.82432 5.88256 5.93238 5.95619 6.03863 6.08122 6.13045 6.24095 6.28897 6.35847 6.44400 6.52588 6.63157 6.75641 6.95679 7.18338 7.20656 7.45157 7.52044 7.89679 8.03139 8.18511 8.23980 8.56101 8.81184 8.91412 9.07350 9.19292 10.30751 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.006081 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.927200 B = 4603.120225 C = 5260.258212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.071 0.929 4 N -0.752 5.752 5 C 0.220 3.780 6 C -0.299 4.299 7 C -0.067 4.067 8 C -0.259 4.259 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.793 5.793 14 Si 0.903 3.097 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.233 4.233 19 C -0.076 4.076 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.138 4.138 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.387 0.613 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.276 0.724 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -0.604 -10.866 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.061 3.939 3 H 0.089 0.911 4 N -0.385 5.385 5 C 0.121 3.879 6 C -0.322 4.322 7 C -0.086 4.086 8 C -0.280 4.280 9 C 0.136 3.864 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.419 5.419 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.256 4.256 19 C -0.076 4.076 20 C -0.200 4.200 21 C -0.197 4.197 22 C -0.196 4.196 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.222 0.778 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.844 -0.621 -11.077 11.741 hybrid contribution 0.303 -0.874 0.615 1.111 sum -3.541 -1.496 -10.461 11.145 Atomic orbital electron populations 1.22412 0.97272 1.01741 1.01454 1.20606 0.92610 0.96318 0.84327 0.91083 1.44562 1.75465 1.11525 1.06980 1.17643 0.94041 0.90990 0.85246 1.19912 1.20768 0.93870 0.97657 1.20281 0.98276 0.96746 0.93266 1.20846 1.14751 0.95311 0.97091 1.17319 0.86740 0.90029 0.92327 1.19561 1.27654 1.08356 0.93995 0.90667 1.25859 0.93666 0.97578 0.96787 1.69876 1.21956 1.24015 1.26041 0.86387 0.77974 0.80510 0.82300 1.19525 1.20469 1.18671 1.20710 1.12774 0.99980 0.92183 1.20788 0.96047 0.95765 0.95046 1.21912 1.01101 0.95505 1.01444 1.21893 1.01100 1.00163 0.96586 1.21821 0.94226 1.01897 1.01611 0.92712 0.92145 0.92800 0.77809 0.89580 0.89806 0.89540 0.91312 0.86679 0.92350 0.93041 0.92512 0.92661 0.92846 0.92325 0.91839 0.93353 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.71 37.16 0.32 -2.11 16 2 C 0.17 2.60 1.54 -67.93 -0.10 2.50 16 3 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 4 N -0.75 -14.20 4.47 -52.21 -0.23 -14.44 16 5 C 0.22 5.13 6.63 -83.86 -0.56 4.57 16 6 C -0.30 -6.86 8.85 -39.08 -0.35 -7.20 16 7 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 8 C -0.26 -6.67 9.79 -38.83 -0.38 -7.05 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 10 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 11 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 12 C 0.08 2.01 5.14 -17.34 -0.09 1.93 16 13 N -0.79 -20.90 10.96 55.55 0.61 -20.29 16 14 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.23 -6.13 8.53 -38.68 -0.33 -6.46 16 19 C -0.08 -0.96 0.59 -154.50 -0.09 -1.05 16 20 C -0.14 -1.69 7.95 37.16 0.30 -1.40 16 21 C -0.14 -1.49 8.12 37.16 0.30 -1.19 16 22 C -0.14 -1.86 8.32 37.16 0.31 -1.55 16 23 H 0.05 0.76 6.43 -51.93 -0.33 0.42 16 24 H 0.06 0.98 7.69 -51.92 -0.40 0.59 16 25 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 26 H 0.39 7.12 6.66 -40.82 -0.27 6.85 16 27 H 0.09 1.79 6.07 -52.48 -0.32 1.47 16 28 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 32 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.73 6.51 -51.93 -0.34 0.39 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 38 H 0.06 0.98 7.44 -51.93 -0.39 0.59 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -27.75 310.91 -8.19 -35.94 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.22 Total: 10.83 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -2.00 Total: -30.85 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.37 Total: -34.72 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.75 -8.19 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695771453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.039 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds