Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47341 * 2 1 4 4 N 1.46504 * 109.46979 * 120.00028 * 2 1 3 5 5 C 1.39688 * 119.99736 * 274.99458 * 4 2 1 6 6 C 1.39332 * 119.95092 * 0.02562 * 5 4 2 7 7 C 1.38484 * 120.42517 * 179.97438 * 6 5 4 8 8 C 1.37684 * 120.32274 * 359.97438 * 7 6 5 9 9 C 1.40753 * 119.89481 * 0.02671 * 8 7 6 10 10 C 1.41405 * 120.20906 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00178 * 24.32070 * 10 9 8 12 12 C 1.39930 * 119.99970 * 204.33004 * 10 9 8 13 13 N 1.30833 * 120.00110 * 17.72297 * 12 10 9 14 14 Si 1.86796 * 119.99968 * 197.73388 * 12 10 9 15 15 H 1.48505 * 109.47617 * 94.68659 * 14 12 10 16 16 H 1.48504 * 109.47200 * 214.68753 * 14 12 10 17 17 H 1.48497 * 109.47271 * 334.68457 * 14 12 10 18 18 C 1.38278 * 119.95104 * 179.72803 * 5 4 2 19 19 C 1.53003 * 109.46857 * 239.99610 * 2 1 3 20 20 C 1.53005 * 109.47095 * 300.00136 * 19 2 1 21 21 C 1.52999 * 109.47034 * 60.00476 * 19 2 1 22 22 C 1.53004 * 109.46821 * 180.02562 * 19 2 1 23 23 H 1.08992 * 109.47630 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46826 * 300.00503 * 1 2 3 25 25 H 1.09001 * 109.46768 * 60.00096 * 1 2 3 26 26 H 0.96996 * 120.00475 * 94.99748 * 4 2 1 27 27 H 1.08004 * 119.78957 * 0.02562 * 6 5 4 28 28 H 1.07996 * 119.83988 * 180.02562 * 7 6 5 29 29 H 1.08006 * 120.05297 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00223 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.16322 * 359.97438 * 18 5 4 32 32 H 1.08998 * 109.47024 * 59.99978 * 20 19 2 33 33 H 1.08997 * 109.46868 * 180.02562 * 20 19 2 34 34 H 1.09003 * 109.46974 * 300.00033 * 20 19 2 35 35 H 1.08992 * 109.47350 * 60.00124 * 21 19 2 36 36 H 1.08998 * 109.46956 * 180.02562 * 21 19 2 37 37 H 1.09006 * 109.46877 * 299.99607 * 21 19 2 38 38 H 1.09001 * 109.47088 * 60.00120 * 22 19 2 39 39 H 1.08998 * 109.46723 * 179.97438 * 22 19 2 40 40 H 1.08998 * 109.47040 * 299.99437 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1518 0.0063 2.3994 6 6 1.8197 1.3581 2.4609 7 6 1.9478 2.0584 3.6487 8 6 2.4045 1.4255 4.7830 9 6 2.7439 0.0603 4.7362 10 6 3.2142 -0.5961 5.8970 11 1 2.9593 -0.2137 6.8744 12 6 4.0101 -1.7410 5.7794 13 7 4.6051 -2.0105 4.6458 14 14 4.2227 -2.8848 7.2408 15 1 3.2323 -3.9880 7.1544 16 1 5.5958 -3.4504 7.2311 17 1 4.0092 -2.1254 8.4990 18 6 2.6074 -0.6479 3.5293 19 6 2.0400 -0.7214 -1.2492 20 6 1.5299 -2.1639 -1.2491 21 6 1.5300 -0.0001 -2.4985 22 6 3.5700 -0.7219 -1.2489 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2490 -1.6318 1.1527 27 1 1.4594 1.8628 1.5767 28 1 1.6873 3.1058 3.6858 29 1 2.5031 1.9760 5.7070 30 1 5.1571 -2.8040 4.5644 31 1 2.8602 -1.6969 3.4841 32 1 0.4399 -2.1638 -1.2491 33 1 1.8935 -2.6779 -2.1388 34 1 1.8932 -2.6777 -0.3591 35 1 1.8934 1.0274 -2.4986 36 1 1.8929 -0.5143 -3.3884 37 1 0.4399 -0.0001 -2.4985 38 1 3.9329 -1.2360 -0.3589 39 1 3.9333 -1.2362 -2.1386 40 1 3.9337 0.3056 -1.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695771453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = -13.680711 kcal Electronic energy + Delta-G solvation = -18263.815889 eV Core-core repulsion = 15655.657213 eV Total energy + Delta-G solvation = -2608.158676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31915 -38.75415 -35.77295 -34.53727 -31.42054 -31.17069 -29.17228 -28.22414 -27.44164 -27.05580 -24.13012 -22.89966 -21.66535 -19.52929 -18.96058 -17.66478 -16.76971 -16.56826 -16.14882 -15.50592 -15.15829 -14.80465 -14.68069 -14.43420 -14.14029 -13.86949 -13.44689 -13.23713 -13.09515 -12.81973 -12.76699 -12.72778 -12.70395 -12.38666 -12.19281 -12.07134 -11.71021 -11.57229 -11.49534 -11.24022 -11.16391 -11.03138 -10.42984 -9.23039 -8.60889 -7.83710 -6.30791 1.09757 1.36329 1.38115 1.51426 1.59374 2.23291 2.81746 2.89696 3.74235 3.86430 3.95229 4.03043 4.42914 4.49874 4.53989 4.60135 4.77051 4.81095 4.83274 4.87664 4.94164 5.02999 5.05024 5.07738 5.09603 5.18421 5.21750 5.23837 5.34723 5.37868 5.45977 5.53244 5.61420 5.66624 5.99886 6.14012 6.23755 6.31017 6.61154 6.97533 7.08065 7.12514 7.29989 8.39470 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.006081 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.927200 B = 4603.120225 C = 5260.258212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.060 0.940 4 N -0.744 5.744 5 C 0.226 3.774 6 C -0.301 4.301 7 C -0.064 4.064 8 C -0.289 4.289 9 C 0.109 3.891 10 C -0.505 4.505 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.979 3.021 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.261 4.261 19 C -0.070 4.070 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.137 4.137 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.388 0.612 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.284 0.716 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 -0.850 -12.630 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.078 0.922 4 N -0.376 5.376 5 C 0.125 3.875 6 C -0.324 4.324 7 C -0.082 4.082 8 C -0.309 4.309 9 C 0.106 3.894 10 C -0.535 4.535 11 H 0.088 0.912 12 C -0.177 4.177 13 N -0.448 5.448 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.285 4.285 19 C -0.070 4.070 20 C -0.198 4.198 21 C -0.194 4.194 22 C -0.195 4.195 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.223 0.777 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.547 -0.862 -12.887 13.693 hybrid contribution 0.500 -0.741 1.020 1.357 sum -4.046 -1.602 -11.867 12.640 Atomic orbital electron populations 1.22342 0.95871 1.02190 1.01812 1.20867 0.93600 0.95750 0.84047 0.92201 1.44692 1.74552 1.11600 1.06754 1.17746 0.92374 0.91469 0.85958 1.20226 1.20041 0.93679 0.98424 1.20641 0.96716 0.98286 0.92579 1.20997 1.16604 0.95084 0.98241 1.17713 0.87467 0.91155 0.93101 1.19801 1.29472 1.10344 0.93884 0.91206 1.26697 0.92658 0.98444 0.99907 1.69933 1.22205 1.24678 1.27999 0.85245 0.78403 0.78022 0.78289 1.18820 1.19207 1.18388 1.20631 1.15155 0.99413 0.93326 1.20755 0.95363 0.96302 0.94611 1.21908 1.01587 0.94806 1.01525 1.21872 1.01768 1.00052 0.95661 1.21812 0.94974 1.01364 1.01305 0.92244 0.94347 0.89845 0.77678 0.87043 0.86605 0.89431 0.90544 0.88465 0.91537 0.91230 0.94199 0.92557 0.91211 0.91228 0.94544 0.91249 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.71 71.98 0.63 -3.67 16 2 C 0.16 4.77 1.54 44.99 0.07 4.84 16 3 H 0.06 1.91 6.47 -2.39 -0.02 1.90 16 4 N -0.74 -28.05 4.47 -319.11 -1.43 -29.48 16 5 C 0.23 10.68 6.63 38.16 0.25 10.93 16 6 C -0.30 -13.59 8.85 22.59 0.20 -13.39 16 7 C -0.06 -2.96 10.02 22.20 0.22 -2.74 16 8 C -0.29 -15.26 9.79 22.75 0.22 -15.03 16 9 C 0.11 6.24 5.57 -21.31 -0.12 6.12 16 10 C -0.51 -28.87 9.05 23.46 0.21 -28.66 16 11 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 12 C 0.04 1.98 5.14 85.25 0.44 2.42 16 13 N -0.82 -44.62 10.96 21.82 0.24 -44.38 16 14 Si 0.98 39.94 29.59 68.60 2.03 41.97 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 C -0.26 -14.29 8.53 22.86 0.19 -14.09 16 19 C -0.07 -1.61 0.59 -52.18 -0.03 -1.64 16 20 C -0.14 -3.02 7.95 71.98 0.57 -2.45 16 21 C -0.14 -2.39 8.12 71.98 0.58 -1.81 16 22 C -0.14 -3.49 8.32 71.98 0.60 -2.90 16 23 H 0.06 1.50 6.43 -2.39 -0.02 1.49 16 24 H 0.04 1.18 7.69 -2.38 -0.02 1.16 16 25 H 0.08 1.70 6.43 -2.39 -0.02 1.69 16 26 H 0.39 14.50 6.66 -92.71 -0.62 13.88 16 27 H 0.11 4.42 6.07 -2.91 -0.02 4.40 16 28 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 31 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 32 H 0.07 1.32 6.43 -2.39 -0.02 1.31 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 0.98 6.51 -2.39 -0.02 0.97 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.09 6.43 -2.38 -0.02 1.07 16 38 H 0.04 1.11 7.44 -2.39 -0.02 1.09 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -61.84 310.91 5.29 -56.55 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 0.40 Total: 37.42 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 4.05 Total: -62.07 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.19 Total: -73.86 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -61.84 5.29 -56.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695771453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.873 kcal (2) G-P(sol) polarization free energy of solvation -61.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds