Wall clock time and date at job start Mon Mar 30 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46983 * 2 1 4 4 N 1.46495 * 109.46881 * 240.00110 * 2 1 3 5 5 C 1.39678 * 120.00149 * 85.00212 * 4 2 1 6 6 C 1.39337 * 119.95303 * 359.97438 * 5 4 2 7 7 C 1.38480 * 120.42670 * 179.97438 * 6 5 4 8 8 C 1.37679 * 120.32511 * 0.02598 * 7 6 5 9 9 C 1.40747 * 119.89462 * 359.97438 * 8 7 6 10 10 C 1.41411 * 120.20623 * 179.72455 * 9 8 7 11 11 H 1.08002 * 120.00361 * 335.49143 * 10 9 8 12 12 C 1.39934 * 119.99862 * 155.49776 * 10 9 8 13 13 N 1.30830 * 119.99881 * 342.05428 * 12 10 9 14 14 Si 1.86797 * 119.99928 * 162.05068 * 12 10 9 15 15 H 1.48502 * 109.46946 * 60.00155 * 14 12 10 16 16 H 1.48503 * 109.47012 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47323 * 299.99776 * 14 12 10 18 18 C 1.38278 * 119.95496 * 180.02562 * 5 4 2 19 19 C 1.53000 * 109.47002 * 120.00192 * 2 1 3 20 20 C 1.53002 * 109.47002 * 180.02562 * 19 2 1 21 21 C 1.52997 * 109.47259 * 300.00118 * 19 2 1 22 22 C 1.53006 * 109.47309 * 59.99929 * 19 2 1 23 23 H 1.09009 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46900 * 299.99381 * 1 2 3 25 25 H 1.08999 * 109.47209 * 59.99808 * 1 2 3 26 26 H 0.97007 * 120.00090 * 265.00099 * 4 2 1 27 27 H 1.08002 * 119.78329 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.83321 * 180.02562 * 7 6 5 29 29 H 1.08008 * 120.05394 * 180.02562 * 8 7 6 30 30 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.16267 * 0.02562 * 18 5 4 32 32 H 1.08996 * 109.46983 * 59.99808 * 20 19 2 33 33 H 1.08999 * 109.47209 * 179.97438 * 20 19 2 34 34 H 1.09005 * 109.46886 * 299.99900 * 20 19 2 35 35 H 1.08995 * 109.47325 * 59.99738 * 21 19 2 36 36 H 1.08999 * 109.47156 * 180.02562 * 21 19 2 37 37 H 1.09002 * 109.47087 * 299.99603 * 21 19 2 38 38 H 1.09002 * 109.46733 * 59.99488 * 22 19 2 39 39 H 1.08999 * 109.47205 * 179.97438 * 22 19 2 40 40 H 1.08995 * 109.46868 * 300.00013 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 1.8196 1.3581 -2.4609 7 6 1.9486 2.0585 -3.6485 8 6 2.4064 1.4259 -4.7825 9 6 2.7457 0.0608 -4.7357 10 6 3.2110 -0.5969 -5.8978 11 1 2.9495 -0.2173 -6.8745 12 6 4.0102 -1.7397 -5.7824 13 7 4.6157 -2.0032 -4.6530 14 14 4.2125 -2.8892 -7.2409 15 1 4.8120 -2.1455 -8.3778 16 1 5.1024 -4.0164 -6.8630 17 1 2.8844 -3.4193 -7.6413 18 6 2.6122 -0.6467 -3.5280 19 6 2.0400 -0.7213 1.2492 20 6 3.5700 -0.7207 1.2495 21 6 1.5300 -0.0001 2.4985 22 6 1.5300 -2.1638 1.2492 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 2.2490 -1.6318 -1.1526 27 1 1.4600 1.8630 -1.5765 28 1 1.6888 3.1062 -3.6853 29 1 2.5057 1.9766 -5.7063 30 1 5.1700 -2.7952 -4.5730 31 1 2.8687 -1.6947 -3.4818 32 1 3.9329 0.3070 1.2498 33 1 3.9334 -1.2342 2.1397 34 1 3.9337 -1.2343 0.3595 35 1 0.4400 -0.0001 2.4985 36 1 1.8937 -0.5137 3.3884 37 1 1.8934 1.0275 2.4986 38 1 1.8933 -2.6776 0.3592 39 1 1.8937 -2.6778 2.1390 40 1 0.4400 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695771460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:03 Heat of formation + Delta-G solvation = 0.086734 kcal Electronic energy + Delta-G solvation = -18261.833717 eV Core-core repulsion = 15654.272042 eV Total energy + Delta-G solvation = -2607.561675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93094 -37.08689 -34.00537 -32.84163 -29.94084 -29.34845 -27.75074 -27.22876 -26.21421 -25.09535 -22.83464 -21.01767 -19.87737 -18.24275 -17.13157 -16.03098 -15.22867 -14.87467 -14.45509 -14.22847 -13.86952 -13.65664 -13.18769 -12.74293 -12.58186 -12.11306 -12.10236 -12.02158 -11.73700 -11.69235 -11.44687 -11.18352 -11.11574 -11.00388 -10.64060 -10.62300 -10.43402 -10.31535 -10.06632 -9.54726 -9.35878 -9.16793 -8.68338 -7.24608 -6.67826 -6.06631 -4.25712 2.92995 3.11509 3.15206 3.29609 3.40335 4.01479 4.37631 4.77642 4.82837 4.95926 5.06954 5.52174 5.57728 5.66243 5.71626 5.82405 5.88214 5.93163 5.95635 6.03836 6.08046 6.13017 6.24070 6.28864 6.35864 6.44407 6.52493 6.63160 6.75639 6.95722 7.18264 7.20665 7.44897 7.52086 7.89598 8.03157 8.18516 8.23639 8.56035 8.81079 8.91272 9.07303 9.19316 10.30903 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.006079 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.409038 B = 4604.629913 C = 5260.214825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.071 0.929 4 N -0.752 5.752 5 C 0.220 3.780 6 C -0.300 4.300 7 C -0.067 4.067 8 C -0.260 4.260 9 C 0.140 3.860 10 C -0.467 4.467 11 H 0.075 0.925 12 C 0.079 3.921 13 N -0.793 5.793 14 Si 0.903 3.097 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.233 4.233 19 C -0.076 4.076 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.142 4.142 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.387 0.613 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.277 0.723 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 -0.626 10.874 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.061 3.939 3 H 0.089 0.911 4 N -0.385 5.385 5 C 0.121 3.879 6 C -0.322 4.322 7 C -0.085 4.085 8 C -0.280 4.280 9 C 0.137 3.863 10 C -0.497 4.497 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.419 5.419 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.257 4.257 19 C -0.076 4.076 20 C -0.196 4.196 21 C -0.197 4.197 22 C -0.200 4.200 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.842 -0.646 11.090 11.755 hybrid contribution 0.303 -0.865 -0.627 1.110 sum -3.540 -1.511 10.463 11.149 Atomic orbital electron populations 1.22414 0.97272 1.01740 1.01454 1.20604 0.92611 0.96317 0.84325 0.91084 1.44559 1.75467 1.11526 1.06976 1.17640 0.94033 0.90997 0.85243 1.19911 1.20809 0.93848 0.97658 1.20280 0.98254 0.96742 0.93273 1.20842 1.14755 0.95316 0.97105 1.17308 0.86705 0.90018 0.92301 1.19513 1.27678 1.08519 0.93950 0.90718 1.25855 0.93645 0.97571 0.96771 1.69864 1.21529 1.24291 1.26204 0.86461 0.78981 0.79684 0.82070 1.19129 1.20523 1.18964 1.20697 1.12751 0.99992 0.92235 1.20786 0.96046 0.95767 0.95046 1.21821 0.94226 1.01903 1.01605 1.21894 1.01097 1.00167 0.96588 1.21911 1.01102 0.95501 1.01443 0.92713 0.92807 0.92137 0.77812 0.89581 0.89808 0.89541 0.91233 0.86726 0.92830 0.93351 0.91836 0.92321 0.92846 0.92669 0.92513 0.93039 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.72 37.16 0.32 -2.11 16 2 C 0.17 2.60 1.54 -67.93 -0.10 2.50 16 3 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 4 N -0.75 -14.19 4.47 -52.22 -0.23 -14.43 16 5 C 0.22 5.13 6.63 -83.86 -0.56 4.57 16 6 C -0.30 -6.86 8.85 -39.08 -0.35 -7.21 16 7 C -0.07 -1.57 10.01 -39.70 -0.40 -1.96 16 8 C -0.26 -6.68 9.79 -38.84 -0.38 -7.06 16 9 C 0.14 3.85 5.57 -106.85 -0.59 3.26 16 10 C -0.47 -12.78 9.05 -37.74 -0.34 -13.13 16 11 H 0.07 1.98 7.91 -52.49 -0.42 1.56 16 12 C 0.08 2.03 5.13 -17.34 -0.09 1.94 16 13 N -0.79 -20.91 10.98 55.55 0.61 -20.30 16 14 Si 0.90 19.14 29.60 -169.99 -5.03 14.11 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 18 C -0.23 -6.13 8.54 -38.67 -0.33 -6.46 16 19 C -0.08 -0.96 0.59 -154.51 -0.09 -1.05 16 20 C -0.14 -1.86 8.32 37.16 0.31 -1.55 16 21 C -0.14 -1.49 8.12 37.16 0.30 -1.19 16 22 C -0.14 -1.69 7.95 37.16 0.30 -1.40 16 23 H 0.05 0.76 6.43 -51.92 -0.33 0.42 16 24 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 25 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 26 H 0.39 7.12 6.66 -40.82 -0.27 6.84 16 27 H 0.09 1.79 6.07 -52.49 -0.32 1.47 16 28 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.11 3.12 6.18 -52.49 -0.32 2.80 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16 35 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.73 6.51 -51.93 -0.34 0.39 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -27.73 310.95 -8.19 -35.92 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.22 Total: 10.86 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -2.00 Total: -30.85 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.38 Total: -34.73 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.73 -8.19 -35.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695771460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.009 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds