Wall clock time and date at job start Mon Mar 30 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46983 * 2 1 4 4 N 1.46495 * 109.46881 * 240.00110 * 2 1 3 5 5 C 1.39678 * 120.00149 * 85.00212 * 4 2 1 6 6 C 1.39337 * 119.95303 * 359.97438 * 5 4 2 7 7 C 1.38480 * 120.42670 * 179.97438 * 6 5 4 8 8 C 1.37679 * 120.32511 * 0.02598 * 7 6 5 9 9 C 1.40747 * 119.89462 * 359.97438 * 8 7 6 10 10 C 1.41411 * 120.20623 * 179.72455 * 9 8 7 11 11 H 1.08002 * 120.00361 * 335.49143 * 10 9 8 12 12 C 1.39934 * 119.99862 * 155.49776 * 10 9 8 13 13 N 1.30830 * 119.99881 * 342.05428 * 12 10 9 14 14 Si 1.86797 * 119.99928 * 162.05068 * 12 10 9 15 15 H 1.48502 * 109.46946 * 60.00155 * 14 12 10 16 16 H 1.48503 * 109.47012 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47323 * 299.99776 * 14 12 10 18 18 C 1.38278 * 119.95496 * 180.02562 * 5 4 2 19 19 C 1.53000 * 109.47002 * 120.00192 * 2 1 3 20 20 C 1.53002 * 109.47002 * 180.02562 * 19 2 1 21 21 C 1.52997 * 109.47259 * 300.00118 * 19 2 1 22 22 C 1.53006 * 109.47309 * 59.99929 * 19 2 1 23 23 H 1.09009 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46900 * 299.99381 * 1 2 3 25 25 H 1.08999 * 109.47209 * 59.99808 * 1 2 3 26 26 H 0.97007 * 120.00090 * 265.00099 * 4 2 1 27 27 H 1.08002 * 119.78329 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.83321 * 180.02562 * 7 6 5 29 29 H 1.08008 * 120.05394 * 180.02562 * 8 7 6 30 30 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.16267 * 0.02562 * 18 5 4 32 32 H 1.08996 * 109.46983 * 59.99808 * 20 19 2 33 33 H 1.08999 * 109.47209 * 179.97438 * 20 19 2 34 34 H 1.09005 * 109.46886 * 299.99900 * 20 19 2 35 35 H 1.08995 * 109.47325 * 59.99738 * 21 19 2 36 36 H 1.08999 * 109.47156 * 180.02562 * 21 19 2 37 37 H 1.09002 * 109.47087 * 299.99603 * 21 19 2 38 38 H 1.09002 * 109.46733 * 59.99488 * 22 19 2 39 39 H 1.08999 * 109.47205 * 179.97438 * 22 19 2 40 40 H 1.08995 * 109.46868 * 300.00013 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 1.8196 1.3581 -2.4609 7 6 1.9486 2.0585 -3.6485 8 6 2.4064 1.4259 -4.7825 9 6 2.7457 0.0608 -4.7357 10 6 3.2110 -0.5969 -5.8978 11 1 2.9495 -0.2173 -6.8745 12 6 4.0102 -1.7397 -5.7824 13 7 4.6157 -2.0032 -4.6530 14 14 4.2125 -2.8892 -7.2409 15 1 4.8120 -2.1455 -8.3778 16 1 5.1024 -4.0164 -6.8630 17 1 2.8844 -3.4193 -7.6413 18 6 2.6122 -0.6467 -3.5280 19 6 2.0400 -0.7213 1.2492 20 6 3.5700 -0.7207 1.2495 21 6 1.5300 -0.0001 2.4985 22 6 1.5300 -2.1638 1.2492 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 2.2490 -1.6318 -1.1526 27 1 1.4600 1.8630 -1.5765 28 1 1.6888 3.1062 -3.6853 29 1 2.5057 1.9766 -5.7063 30 1 5.1700 -2.7952 -4.5730 31 1 2.8687 -1.6947 -3.4818 32 1 3.9329 0.3070 1.2498 33 1 3.9334 -1.2342 2.1397 34 1 3.9337 -1.2343 0.3595 35 1 0.4400 -0.0001 2.4985 36 1 1.8937 -0.5137 3.3884 37 1 1.8934 1.0275 2.4986 38 1 1.8933 -2.6776 0.3592 39 1 1.8937 -2.6778 2.1390 40 1 0.4400 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695771460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:02 Heat of formation + Delta-G solvation = -13.683685 kcal Electronic energy + Delta-G solvation = -18262.430847 eV Core-core repulsion = 15654.272042 eV Total energy + Delta-G solvation = -2608.158805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31975 -38.75358 -35.77173 -34.53781 -31.42196 -31.17023 -29.17135 -28.22621 -27.44044 -27.05269 -24.13012 -22.90058 -21.66390 -19.52886 -18.95835 -17.66035 -16.77049 -16.57294 -16.14810 -15.50672 -15.15940 -14.80164 -14.67902 -14.43183 -14.13852 -13.86762 -13.45104 -13.23726 -13.09058 -12.82114 -12.76550 -12.72209 -12.69993 -12.38483 -12.19364 -12.09128 -11.71597 -11.57240 -11.49318 -11.24535 -11.16195 -11.02099 -10.42960 -9.22920 -8.60764 -7.83784 -6.30606 1.11138 1.36434 1.38018 1.49205 1.60636 2.23316 2.81897 2.89775 3.74223 3.86408 3.95239 4.02985 4.42871 4.49885 4.53997 4.60119 4.77035 4.81101 4.83200 4.87681 4.94195 5.03042 5.05062 5.07767 5.09538 5.18390 5.21642 5.23828 5.34620 5.37860 5.45889 5.53151 5.61415 5.66662 5.99797 6.14070 6.23529 6.31061 6.61105 6.97478 7.08097 7.12456 7.29965 8.39492 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.006079 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.409038 B = 4604.629913 C = 5260.214825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.060 0.940 4 N -0.744 5.744 5 C 0.226 3.774 6 C -0.301 4.301 7 C -0.063 4.063 8 C -0.289 4.289 9 C 0.109 3.891 10 C -0.507 4.507 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.979 3.021 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.262 1.262 18 C -0.261 4.261 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.141 4.141 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.388 0.612 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.284 0.716 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -0.866 12.629 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.078 0.922 4 N -0.376 5.376 5 C 0.125 3.875 6 C -0.324 4.324 7 C -0.082 4.082 8 C -0.309 4.309 9 C 0.106 3.894 10 C -0.536 4.536 11 H 0.088 0.912 12 C -0.177 4.177 13 N -0.448 5.448 14 Si 0.800 3.200 15 H -0.185 1.185 16 H -0.191 1.191 17 H -0.187 1.187 18 C -0.286 4.286 19 C -0.070 4.070 20 C -0.195 4.195 21 C -0.194 4.194 22 C -0.198 4.198 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.223 0.777 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.546 -0.880 12.890 13.697 hybrid contribution 0.499 -0.731 -1.029 1.357 sum -4.047 -1.611 11.861 12.636 Atomic orbital electron populations 1.22343 0.95870 1.02194 1.01811 1.20864 0.93601 0.95748 0.84046 0.92204 1.44689 1.74552 1.11604 1.06747 1.17743 0.92363 0.91475 0.85956 1.20226 1.20078 0.93658 0.98425 1.20641 0.96699 0.98285 0.92587 1.20996 1.16601 0.95088 0.98260 1.17706 0.87438 0.91147 0.93081 1.19771 1.29467 1.10504 0.93891 0.91155 1.26696 0.92625 0.98464 0.99878 1.69925 1.21794 1.24931 1.28163 0.85320 0.79087 0.77459 0.78181 1.18479 1.19144 1.18678 1.20621 1.15126 0.99434 0.93379 1.20753 0.95363 0.96307 0.94609 1.21812 0.94975 1.01370 1.01300 1.21873 1.01765 1.00055 0.95665 1.21907 1.01589 0.94800 1.01527 0.92239 0.89854 0.94340 0.77675 0.87044 0.86605 0.89420 0.90524 0.88510 0.93473 0.91247 0.94541 0.91224 0.91211 0.92567 0.94195 0.91230 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.72 71.98 0.63 -3.67 16 2 C 0.16 4.77 1.54 44.99 0.07 4.84 16 3 H 0.06 1.91 6.47 -2.39 -0.02 1.90 16 4 N -0.74 -28.04 4.47 -319.13 -1.43 -29.47 16 5 C 0.23 10.69 6.63 38.17 0.25 10.94 16 6 C -0.30 -13.60 8.85 22.59 0.20 -13.40 16 7 C -0.06 -2.96 10.01 22.20 0.22 -2.74 16 8 C -0.29 -15.27 9.79 22.75 0.22 -15.04 16 9 C 0.11 6.28 5.57 -21.31 -0.12 6.16 16 10 C -0.51 -28.94 9.05 23.46 0.21 -28.73 16 11 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 12 C 0.04 2.01 5.13 85.25 0.44 2.45 16 13 N -0.82 -44.66 10.98 21.82 0.24 -44.42 16 14 Si 0.98 39.89 29.60 68.60 2.03 41.92 16 15 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 18 C -0.26 -14.31 8.54 22.86 0.20 -14.11 16 19 C -0.07 -1.61 0.59 -52.18 -0.03 -1.64 16 20 C -0.14 -3.49 8.32 71.98 0.60 -2.90 16 21 C -0.14 -2.39 8.12 71.98 0.58 -1.81 16 22 C -0.14 -3.02 7.95 71.98 0.57 -2.45 16 23 H 0.06 1.50 6.43 -2.38 -0.02 1.49 16 24 H 0.08 1.70 6.43 -2.39 -0.02 1.69 16 25 H 0.04 1.18 7.69 -2.39 -0.02 1.16 16 26 H 0.39 14.49 6.66 -92.70 -0.62 13.87 16 27 H 0.11 4.42 6.07 -2.91 -0.02 4.40 16 28 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 31 H 0.10 5.54 6.18 -2.91 -0.02 5.53 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.11 7.45 -2.38 -0.02 1.09 16 35 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 0.98 6.51 -2.39 -0.02 0.97 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.32 6.43 -2.39 -0.02 1.31 16 Total: -1.00 -61.82 310.95 5.29 -56.53 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.40 Total: 37.54 kcal Atomic # 6 Polarization: -66.15 SS G_CDS: 4.05 Total: -62.10 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.19 Total: -73.89 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -61.82 5.29 -56.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695771460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.848 kcal (2) G-P(sol) polarization free energy of solvation -61.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds