Wall clock time and date at job start Mon Mar 30 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46865 * 2 1 4 4 C 1.38126 * 119.95973 * 264.99276 * 3 2 1 5 5 C 1.38896 * 119.92207 * 179.74764 * 4 3 2 6 6 N 1.39680 * 120.07165 * 180.23636 * 5 4 3 7 7 C 1.46498 * 119.99638 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47284 * 34.99806 * 7 6 5 9 9 C 1.52998 * 109.46898 * 274.99192 * 7 6 5 10 10 C 1.53003 * 109.47072 * 154.99841 * 7 6 5 11 11 C 1.50701 * 109.46777 * 294.99726 * 10 7 6 12 12 H 1.07995 * 120.00439 * 0.02562 * 11 10 7 13 13 C 1.37882 * 119.99794 * 180.02562 * 11 10 7 14 14 N 1.31515 * 119.99767 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46842 * 60.00287 * 15 13 11 17 17 H 1.48506 * 109.47125 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47148 * 299.99973 * 15 13 11 19 19 C 1.38932 * 119.85155 * 0.25762 * 5 4 3 20 20 C 1.38080 * 119.92429 * 359.97438 * 19 5 4 21 21 C 1.38269 * 119.96605 * 85.23107 * 3 2 1 22 22 C 1.50702 * 119.92478 * 359.97438 * 21 3 2 23 23 H 1.08998 * 109.46916 * 60.00338 * 1 2 3 24 24 H 1.08995 * 109.47421 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47397 * 300.00688 * 1 2 3 26 26 H 1.08996 * 109.47104 * 240.00024 * 2 1 3 27 27 H 1.09003 * 109.46877 * 119.99178 * 2 1 3 28 28 H 1.08002 * 120.04078 * 0.03195 * 4 3 2 29 29 H 0.97003 * 119.99758 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.46915 * 60.00688 * 9 7 6 31 31 H 1.08999 * 109.47560 * 179.97438 * 9 7 6 32 32 H 1.08997 * 109.47654 * 300.00388 * 9 7 6 33 33 H 1.09005 * 109.47356 * 54.99483 * 10 7 6 34 34 H 1.09000 * 109.47201 * 174.99436 * 10 7 6 35 35 H 0.96998 * 120.00042 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.03575 * 180.02562 * 19 5 4 37 37 H 1.07998 * 119.95666 * 180.02562 * 20 19 5 38 38 H 1.09001 * 109.46845 * 270.23237 * 22 21 3 39 39 H 1.08999 * 109.46516 * 30.23095 * 22 21 3 40 40 H 1.08995 * 109.46872 * 150.23608 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0364 -1.1921 5 6 2.8185 3.3477 -1.1917 6 7 3.1468 3.9748 -2.3958 7 6 3.6301 5.3578 -2.3934 8 1 4.2362 5.5293 -1.5039 9 6 2.4366 6.3150 -2.3898 10 6 4.4776 5.6040 -3.6433 11 6 5.7169 4.7485 -3.5864 12 1 5.8833 4.0943 -2.7434 13 6 6.6385 4.8011 -4.6106 14 7 6.4356 5.5974 -5.6374 15 14 8.1750 3.7412 -4.5398 16 1 7.7862 2.3092 -4.4801 17 1 8.9975 3.9801 -5.7530 18 1 8.9624 4.0912 -3.3305 19 6 2.9497 4.0340 0.0092 20 6 2.6242 3.4110 1.1977 21 6 2.1686 2.1052 1.1937 22 6 1.8139 1.4287 2.4928 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8901 28 1 2.2572 1.5002 -2.1239 29 1 3.0554 3.4943 -3.2335 30 1 1.8328 6.1396 -1.4994 31 1 2.7961 7.3441 -2.3876 32 1 1.8305 6.1435 -3.2794 33 1 3.8993 5.3472 -4.5308 34 1 4.7632 6.6550 -3.6873 35 1 7.0837 5.6341 -6.3582 36 1 3.3050 5.0538 0.0129 37 1 2.7255 3.9441 2.1314 38 1 0.7619 1.6039 2.7182 39 1 1.9932 0.3571 2.4052 40 1 2.4299 1.8359 3.2945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:44 Heat of formation + Delta-G solvation = -19.789901 kcal Electronic energy + Delta-G solvation = -17749.641285 eV Core-core repulsion = 15141.217694 eV Total energy + Delta-G solvation = -2608.423591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64383 -38.15113 -35.36171 -34.37361 -33.37868 -30.79319 -30.27776 -29.25568 -26.53130 -25.04759 -24.77411 -22.78937 -21.98231 -20.38981 -18.54296 -17.94385 -17.09491 -16.48848 -16.03179 -15.63857 -15.28704 -14.71608 -14.71061 -14.25709 -14.24883 -14.01188 -13.62812 -13.36903 -13.33231 -13.19605 -13.05829 -12.73186 -12.64465 -12.49273 -12.45354 -12.20497 -12.05018 -11.59435 -11.34003 -11.32151 -11.23301 -10.60374 -10.47220 -9.52098 -8.22054 -8.00568 -6.30290 0.63842 0.86025 1.37021 1.38099 1.46466 2.38308 2.73554 3.05767 3.13292 3.94070 4.07722 4.19914 4.30184 4.34713 4.49327 4.51225 4.53689 4.58808 4.64877 4.78854 4.84851 4.95574 4.99073 5.01509 5.09931 5.12520 5.18931 5.24178 5.26053 5.36506 5.41370 5.46857 5.55312 5.64392 5.72718 5.78816 5.98345 6.20067 6.24389 6.69776 6.83351 7.03167 7.38285 8.89310 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.005306 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.226499 B = 5275.583722 C = 5709.007600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.039 4.039 4 C -0.217 4.217 5 C 0.211 3.789 6 N -0.727 5.727 7 C 0.160 3.840 8 H 0.059 0.941 9 C -0.153 4.153 10 C 0.023 3.977 11 C -0.525 4.525 12 H 0.051 0.949 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.955 3.045 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.271 1.271 19 C -0.222 4.222 20 C -0.074 4.074 21 C -0.166 4.166 22 C -0.099 4.099 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.394 0.606 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.000 1.000 34 H 0.009 0.991 35 H 0.263 0.737 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 -8.599 13.792 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.040 4.040 4 C -0.240 4.240 5 C 0.106 3.894 6 N -0.353 5.353 7 C 0.055 3.945 8 H 0.077 0.923 9 C -0.212 4.212 10 C -0.015 4.015 11 C -0.563 4.563 12 H 0.069 0.931 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.196 1.196 19 C -0.245 4.245 20 C -0.092 4.092 21 C -0.168 4.168 22 C -0.156 4.156 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.228 0.772 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.956 -8.321 13.632 19.368 hybrid contribution 1.099 -0.147 -1.066 1.538 sum -9.858 -8.469 12.566 18.077 Atomic orbital electron populations 1.21671 0.93847 1.02329 1.01828 1.20621 0.96883 0.91536 1.03184 1.19702 0.96097 0.96481 0.91710 1.20566 1.10482 0.94194 0.98778 1.18151 0.92474 0.91996 0.86823 1.44835 1.71180 1.13721 1.05549 1.20856 0.93709 0.81097 0.98825 0.92319 1.22166 0.98156 0.99282 1.01567 1.19239 0.93805 0.95961 0.92455 1.21428 1.05810 1.23878 1.05232 0.93116 1.25809 1.01374 0.96840 0.95183 1.70059 1.37393 1.39565 1.09996 0.85650 0.79470 0.79252 0.77552 1.19812 1.20709 1.19628 1.20771 1.10710 1.01179 0.91865 1.20971 0.96569 0.94503 0.97165 1.19736 1.06414 0.94936 0.95695 1.20692 1.01630 1.00375 0.92854 0.93766 0.90885 0.92248 0.91532 0.89403 0.86741 0.77207 0.92175 0.91621 0.93127 0.98171 0.97298 0.92813 0.86759 0.84723 0.91142 0.90935 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.09 -1.75 5.57 29.85 0.17 -1.58 16 3 C -0.04 -1.07 5.13 -19.88 -0.10 -1.17 16 4 C -0.22 -7.01 9.53 22.40 0.21 -6.80 16 5 C 0.21 7.55 6.64 38.21 0.25 7.80 16 6 N -0.73 -28.31 4.96 -318.95 -1.58 -29.90 16 7 C 0.16 6.57 2.21 44.99 0.10 6.67 16 8 H 0.06 2.48 6.48 -2.39 -0.02 2.46 16 9 C -0.15 -5.24 9.43 71.98 0.68 -4.56 16 10 C 0.02 1.16 4.52 29.85 0.13 1.30 16 11 C -0.53 -29.40 8.84 25.60 0.23 -29.17 16 12 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 13 C 0.01 0.34 5.46 84.66 0.46 0.80 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 15 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 C -0.22 -7.42 8.85 22.40 0.20 -7.22 16 20 C -0.07 -2.06 9.69 22.25 0.22 -1.85 16 21 C -0.17 -4.28 5.88 -19.84 -0.12 -4.39 16 22 C -0.10 -1.80 9.39 71.24 0.67 -1.13 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 26 H 0.07 1.37 8.05 -2.39 -0.02 1.35 16 27 H 0.09 1.52 6.15 -2.39 -0.01 1.51 16 28 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.39 15.64 8.62 -92.71 -0.80 14.85 16 30 H 0.06 1.87 7.71 -2.38 -0.02 1.85 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.11 3.82 6.12 -2.91 -0.02 3.81 16 37 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.15 6.02 -2.39 -0.01 1.14 16 40 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 Total: -1.00 -62.18 324.46 4.75 -57.43 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.21 Total: 24.09 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 3.81 Total: -43.04 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.30 Total: -85.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.18 4.75 -57.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.644 kcal (2) G-P(sol) polarization free energy of solvation -62.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds