Wall clock time and date at job start Mon Mar 30 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47234 * 2 1 4 4 C 1.38125 * 119.96333 * 265.01586 * 3 2 1 5 5 C 1.38885 * 119.92356 * 179.97438 * 4 3 2 6 6 N 1.39677 * 120.07119 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99739 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47719 * 325.00253 * 7 6 5 9 9 C 1.52998 * 109.47007 * 85.00729 * 7 6 5 10 10 C 1.53005 * 109.47313 * 205.00708 * 7 6 5 11 11 C 1.50697 * 109.47178 * 64.99799 * 10 7 6 12 12 H 1.08000 * 120.00023 * 0.02562 * 11 10 7 13 13 C 1.37873 * 119.99862 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00481 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46818 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46871 * 119.99977 * 15 13 11 18 18 H 1.48493 * 109.47536 * 240.00186 * 15 13 11 19 19 C 1.38932 * 119.85655 * 0.02562 * 5 4 3 20 20 C 1.38087 * 119.91775 * 359.71997 * 19 5 4 21 21 C 1.38267 * 119.96215 * 85.00057 * 3 2 1 22 22 C 1.50703 * 119.92524 * 0.02562 * 21 3 2 23 23 H 1.09002 * 109.47587 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47518 * 300.00321 * 1 2 3 25 25 H 1.09007 * 109.46989 * 59.99854 * 1 2 3 26 26 H 1.08991 * 109.47082 * 239.99804 * 2 1 3 27 27 H 1.08999 * 109.46680 * 120.00029 * 2 1 3 28 28 H 1.08001 * 120.03272 * 359.96573 * 4 3 2 29 29 H 0.96994 * 120.00287 * 0.02562 * 6 5 4 30 30 H 1.08997 * 109.47168 * 59.99951 * 9 7 6 31 31 H 1.09002 * 109.46987 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47447 * 299.99432 * 9 7 6 33 33 H 1.08994 * 109.47233 * 185.00726 * 10 7 6 34 34 H 1.09010 * 109.46688 * 305.00258 * 10 7 6 35 35 H 0.96995 * 120.00532 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.04169 * 179.97438 * 19 5 4 37 37 H 1.08002 * 119.95976 * 180.29628 * 20 19 5 38 38 H 1.09002 * 109.47152 * 90.00162 * 22 21 3 39 39 H 1.09001 * 109.46980 * 330.00263 * 22 21 3 40 40 H 1.09004 * 109.47113 * 210.00244 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0366 -1.1921 5 6 2.8227 3.3462 -1.1912 6 7 3.1548 3.9720 -2.3950 7 6 3.6429 5.3533 -2.3921 8 1 3.1412 5.9144 -1.6036 9 6 5.1522 5.3602 -2.1418 10 6 3.3475 6.0015 -3.7462 11 6 1.8565 6.1059 -3.9385 12 1 1.1865 5.7464 -3.1715 13 6 1.3476 6.6605 -5.0936 14 7 2.1633 7.0979 -6.0280 15 14 -0.5006 6.7907 -5.3318 16 1 -1.1934 6.2318 -4.1431 17 1 -0.8789 8.2169 -5.4994 18 1 -0.8989 6.0274 -6.5417 19 6 2.9543 4.0324 0.0096 20 6 2.6196 3.4125 1.1973 21 6 2.1641 2.1067 1.1933 22 6 1.8055 1.4315 2.4921 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.2574 1.5001 -2.1238 29 1 3.0622 3.4921 -3.2328 30 1 5.6539 4.7993 -2.9303 31 1 5.5155 6.3880 -2.1401 32 1 5.3628 4.8986 -1.1771 33 1 3.7884 6.9978 -3.7760 34 1 3.7746 5.3912 -4.5420 35 1 1.8053 7.4878 -6.8408 36 1 3.3139 5.0506 0.0139 37 1 2.7170 3.9469 2.1308 38 1 2.6844 0.9278 2.8945 39 1 1.0166 0.7003 2.3157 40 1 1.4561 2.1781 3.2053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:47 Heat of formation + Delta-G solvation = -6.350338 kcal Electronic energy + Delta-G solvation = -17771.998085 eV Core-core repulsion = 15164.157277 eV Total energy + Delta-G solvation = -2607.840807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42961 -36.71555 -33.88871 -32.84501 -31.89955 -29.51415 -29.12861 -27.41851 -25.37864 -23.68407 -23.12464 -21.65122 -20.51816 -19.07414 -16.73194 -16.26271 -15.77435 -14.91786 -14.62491 -14.25980 -14.09775 -13.63140 -13.17874 -13.05542 -12.96550 -12.72176 -12.41216 -11.96764 -11.85328 -11.71030 -11.57218 -11.45368 -11.35885 -11.14177 -10.80757 -10.68618 -10.55504 -10.42772 -10.12220 -9.48226 -9.32934 -8.99680 -8.43510 -8.32740 -6.66549 -6.05823 -4.07806 1.84804 2.07200 3.28041 3.36245 3.41708 4.16980 4.27340 4.42670 4.98500 5.08432 5.28921 5.31285 5.41500 5.46922 5.53215 5.64886 5.78652 5.80121 5.82549 5.87575 5.93330 5.99054 6.02028 6.07299 6.14910 6.27843 6.37841 6.44339 6.51274 6.65730 6.80040 6.88046 6.90831 7.12533 7.34420 7.51874 7.57408 7.91910 8.12897 8.33987 8.49736 8.98992 9.57088 11.05182 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.005669 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.188110 B = 4937.911220 C = 5670.362826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.035 4.035 4 C -0.205 4.205 5 C 0.236 3.764 6 N -0.717 5.717 7 C 0.147 3.853 8 H 0.067 0.933 9 C -0.164 4.164 10 C 0.015 3.985 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.207 4.207 20 C -0.068 4.068 21 C -0.168 4.168 22 C -0.102 4.102 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.114 0.886 29 H 0.399 0.601 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -11.055 12.792 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.035 4.035 4 C -0.228 4.228 5 C 0.128 3.872 6 N -0.341 5.341 7 C 0.042 3.958 8 H 0.085 0.915 9 C -0.223 4.223 10 C -0.022 4.022 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.230 4.230 20 C -0.087 4.087 21 C -0.170 4.170 22 C -0.159 4.159 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.234 0.766 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.064 -10.738 12.599 16.588 hybrid contribution -1.034 0.121 -0.706 1.258 sum 0.030 -10.617 11.893 15.942 Atomic orbital electron populations 1.21747 0.95035 1.01131 1.02455 1.20507 0.95984 0.93389 1.02184 1.19315 0.96972 0.95016 0.92242 1.20377 1.10082 0.94661 0.97687 1.17932 0.91018 0.91108 0.87114 1.44985 1.69916 1.14198 1.05026 1.21186 0.91338 0.81640 1.01609 0.91523 1.22291 0.98029 1.01292 1.00663 1.19397 0.97187 0.96003 0.89628 1.21220 0.91754 1.39430 1.02851 0.92419 1.25004 0.97799 0.95491 0.96081 1.69965 1.34284 1.41284 1.07988 0.86561 0.85855 0.77707 0.78081 1.19742 1.21022 1.21061 1.20648 1.10296 1.00680 0.91331 1.20652 0.97118 0.93951 0.96993 1.19276 1.08176 0.95242 0.94311 1.20646 1.00688 0.99914 0.94602 0.92880 0.92487 0.92407 0.91528 0.91294 0.86810 0.76635 0.93019 0.92357 0.93650 0.95171 0.96133 0.93038 0.86266 0.87040 0.92598 0.92078 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.70 37.16 0.36 -1.22 16 2 C -0.08 -0.96 5.36 -27.88 -0.15 -1.11 16 3 C -0.03 -0.50 5.13 -104.65 -0.54 -1.04 16 4 C -0.20 -3.33 9.53 -39.38 -0.38 -3.71 16 5 C 0.24 4.20 6.64 -83.79 -0.56 3.64 16 6 N -0.72 -13.58 4.96 -52.16 -0.26 -13.84 16 7 C 0.15 2.93 2.21 -67.93 -0.15 2.78 16 8 H 0.07 1.37 6.48 -51.93 -0.34 1.03 16 9 C -0.16 -2.80 9.43 37.16 0.35 -2.45 16 10 C 0.02 0.37 4.52 -27.88 -0.13 0.24 16 11 C -0.51 -14.05 8.84 -34.44 -0.30 -14.36 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.21 -3.49 8.85 -39.38 -0.35 -3.84 16 20 C -0.07 -1.02 9.69 -39.61 -0.38 -1.41 16 21 C -0.17 -2.38 5.88 -104.59 -0.62 -2.99 16 22 C -0.10 -1.12 9.21 36.01 0.33 -0.79 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.61 6.91 -51.93 -0.36 0.25 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 27 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.40 7.58 8.61 -40.82 -0.35 7.22 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.12 1.99 6.12 -52.49 -0.32 1.67 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.62 5.41 -51.93 -0.28 0.34 16 40 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -28.97 323.08 -8.87 -37.85 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.60 Total: 4.81 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.60 Total: -24.74 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.48 Total: -39.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.97 -8.87 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.496 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds