Wall clock time and date at job start Mon Mar 30 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47234 * 2 1 4 4 C 1.38125 * 119.96333 * 265.01586 * 3 2 1 5 5 C 1.38885 * 119.92356 * 179.97438 * 4 3 2 6 6 N 1.39677 * 120.07119 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99739 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47719 * 325.00253 * 7 6 5 9 9 C 1.52998 * 109.47007 * 85.00729 * 7 6 5 10 10 C 1.53005 * 109.47313 * 205.00708 * 7 6 5 11 11 C 1.50697 * 109.47178 * 64.99799 * 10 7 6 12 12 H 1.08000 * 120.00023 * 0.02562 * 11 10 7 13 13 C 1.37873 * 119.99862 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00481 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46818 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46871 * 119.99977 * 15 13 11 18 18 H 1.48493 * 109.47536 * 240.00186 * 15 13 11 19 19 C 1.38932 * 119.85655 * 0.02562 * 5 4 3 20 20 C 1.38087 * 119.91775 * 359.71997 * 19 5 4 21 21 C 1.38267 * 119.96215 * 85.00057 * 3 2 1 22 22 C 1.50703 * 119.92524 * 0.02562 * 21 3 2 23 23 H 1.09002 * 109.47587 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47518 * 300.00321 * 1 2 3 25 25 H 1.09007 * 109.46989 * 59.99854 * 1 2 3 26 26 H 1.08991 * 109.47082 * 239.99804 * 2 1 3 27 27 H 1.08999 * 109.46680 * 120.00029 * 2 1 3 28 28 H 1.08001 * 120.03272 * 359.96573 * 4 3 2 29 29 H 0.96994 * 120.00287 * 0.02562 * 6 5 4 30 30 H 1.08997 * 109.47168 * 59.99951 * 9 7 6 31 31 H 1.09002 * 109.46987 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47447 * 299.99432 * 9 7 6 33 33 H 1.08994 * 109.47233 * 185.00726 * 10 7 6 34 34 H 1.09010 * 109.46688 * 305.00258 * 10 7 6 35 35 H 0.96995 * 120.00532 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.04169 * 179.97438 * 19 5 4 37 37 H 1.08002 * 119.95976 * 180.29628 * 20 19 5 38 38 H 1.09002 * 109.47152 * 90.00162 * 22 21 3 39 39 H 1.09001 * 109.46980 * 330.00263 * 22 21 3 40 40 H 1.09004 * 109.47113 * 210.00244 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0366 -1.1921 5 6 2.8227 3.3462 -1.1912 6 7 3.1548 3.9720 -2.3950 7 6 3.6429 5.3533 -2.3921 8 1 3.1412 5.9144 -1.6036 9 6 5.1522 5.3602 -2.1418 10 6 3.3475 6.0015 -3.7462 11 6 1.8565 6.1059 -3.9385 12 1 1.1865 5.7464 -3.1715 13 6 1.3476 6.6605 -5.0936 14 7 2.1633 7.0979 -6.0280 15 14 -0.5006 6.7907 -5.3318 16 1 -1.1934 6.2318 -4.1431 17 1 -0.8789 8.2169 -5.4994 18 1 -0.8989 6.0274 -6.5417 19 6 2.9543 4.0324 0.0096 20 6 2.6196 3.4125 1.1973 21 6 2.1641 2.1067 1.1933 22 6 1.8055 1.4315 2.4921 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.2574 1.5001 -2.1238 29 1 3.0622 3.4921 -3.2328 30 1 5.6539 4.7993 -2.9303 31 1 5.5155 6.3880 -2.1401 32 1 5.3628 4.8986 -1.1771 33 1 3.7884 6.9978 -3.7760 34 1 3.7746 5.3912 -4.5420 35 1 1.8053 7.4878 -6.8408 36 1 3.3139 5.0506 0.0139 37 1 2.7170 3.9469 2.1308 38 1 2.6844 0.9278 2.8945 39 1 1.0166 0.7003 2.3157 40 1 1.4561 2.1781 3.2053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:46 Heat of formation + Delta-G solvation = -20.793785 kcal Electronic energy + Delta-G solvation = -17772.624399 eV Core-core repulsion = 15164.157277 eV Total energy + Delta-G solvation = -2608.467122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64613 -38.15520 -35.37302 -34.38290 -33.37407 -30.79030 -30.28134 -29.25928 -26.55532 -25.05689 -24.73436 -22.78133 -21.99058 -20.40729 -18.55074 -17.93419 -17.10444 -16.48182 -16.05726 -15.65201 -15.19885 -14.95240 -14.44867 -14.30690 -14.21974 -14.12880 -13.64374 -13.35474 -13.31196 -13.24388 -12.82541 -12.73385 -12.67497 -12.64987 -12.41545 -12.18156 -12.08434 -11.64318 -11.35403 -11.30209 -11.22995 -10.61272 -10.46964 -9.52100 -8.22612 -8.00367 -6.30658 0.63770 0.85795 1.34831 1.36782 1.48874 2.37880 2.73461 3.05296 3.12826 3.94632 4.07592 4.19960 4.32178 4.34698 4.48820 4.49742 4.53826 4.60435 4.66196 4.78012 4.86401 4.92670 4.98307 5.01719 5.06178 5.12092 5.15725 5.23924 5.25938 5.37650 5.42593 5.47797 5.54737 5.64646 5.72789 5.78770 5.97091 6.19922 6.24246 6.69733 6.83439 7.03367 7.38094 8.89134 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.005669 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.188110 B = 4937.911220 C = 5670.362826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.039 4.039 4 C -0.217 4.217 5 C 0.211 3.789 6 N -0.727 5.727 7 C 0.160 3.840 8 H 0.058 0.942 9 C -0.153 4.153 10 C 0.022 3.978 11 C -0.523 4.523 12 H 0.050 0.950 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.955 3.045 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.223 4.223 20 C -0.074 4.074 21 C -0.165 4.165 22 C -0.101 4.101 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.394 0.606 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.009 0.991 34 H 0.000 1.000 35 H 0.263 0.737 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -12.546 14.775 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.040 4.040 4 C -0.240 4.240 5 C 0.105 3.895 6 N -0.353 5.353 7 C 0.055 3.945 8 H 0.077 0.923 9 C -0.212 4.212 10 C -0.015 4.015 11 C -0.561 4.561 12 H 0.068 0.932 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.781 3.219 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.246 4.246 20 C -0.092 4.092 21 C -0.168 4.168 22 C -0.157 4.157 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.228 0.772 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.122 -12.246 14.615 19.067 hybrid contribution -0.749 0.524 -1.244 1.544 sum -0.628 -11.722 13.371 17.793 Atomic orbital electron populations 1.21730 0.94352 1.02370 1.01668 1.20572 0.96435 0.91515 1.03366 1.19717 0.96066 0.96532 0.91696 1.20571 1.10330 0.94340 0.98752 1.18149 0.92517 0.91975 0.86811 1.44829 1.71355 1.13620 1.05474 1.20857 0.93228 0.82103 0.98304 0.92347 1.22166 0.95716 1.01936 1.01355 1.19249 0.95571 0.94925 0.91776 1.21475 0.93072 1.38921 1.02619 0.93162 1.25807 1.02270 0.95274 0.95899 1.70071 1.36231 1.42206 1.08536 0.85540 0.80469 0.77882 0.77997 1.19561 1.20337 1.20410 1.20772 1.11169 1.00721 0.91904 1.20976 0.96526 0.94570 0.97171 1.19744 1.06344 0.94967 0.95717 1.20709 1.01737 1.00364 0.92929 0.90669 0.92317 0.94143 0.91168 0.89332 0.86681 0.77192 0.93116 0.91623 0.92159 0.97275 0.98134 0.92822 0.86768 0.84740 0.91116 0.90893 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.70 71.98 0.70 -2.04 16 2 C -0.08 -1.67 5.36 29.85 0.16 -1.51 16 3 C -0.04 -1.07 5.13 -19.88 -0.10 -1.18 16 4 C -0.22 -7.00 9.53 22.40 0.21 -6.78 16 5 C 0.21 7.55 6.64 38.21 0.25 7.81 16 6 N -0.73 -28.30 4.96 -318.95 -1.58 -29.89 16 7 C 0.16 6.56 2.21 44.99 0.10 6.66 16 8 H 0.06 2.47 6.48 -2.39 -0.02 2.45 16 9 C -0.15 -5.24 9.43 71.98 0.68 -4.56 16 10 C 0.02 1.13 4.52 29.85 0.13 1.26 16 11 C -0.52 -29.25 8.84 25.60 0.23 -29.03 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 15 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 C -0.22 -7.45 8.85 22.40 0.20 -7.25 16 20 C -0.07 -2.08 9.69 22.25 0.22 -1.86 16 21 C -0.17 -4.28 5.88 -19.84 -0.12 -4.40 16 22 C -0.10 -1.84 9.21 71.24 0.66 -1.19 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.09 6.91 -2.39 -0.02 1.07 16 25 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 27 H 0.09 1.48 6.98 -2.39 -0.02 1.47 16 28 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.39 15.61 8.61 -92.71 -0.80 14.82 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.87 7.71 -2.39 -0.02 1.86 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.11 3.83 6.12 -2.91 -0.02 3.81 16 37 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.18 5.41 -2.39 -0.01 1.16 16 40 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 Total: -1.00 -62.33 323.08 4.72 -57.61 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.21 Total: 24.04 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 3.78 Total: -43.29 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.30 Total: -85.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.33 4.72 -57.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.815 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds