Wall clock time and date at job start Mon Mar 30 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46981 * 2 1 4 4 C 1.38256 * 119.99981 * 265.20717 * 3 2 1 5 5 C 1.38207 * 120.00121 * 180.23251 * 4 3 2 6 6 C 1.38264 * 119.99914 * 359.81478 * 5 4 3 7 7 C 1.38206 * 119.99894 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.00143 * 85.00542 * 3 2 1 9 9 C 1.50698 * 119.99807 * 359.97438 * 8 3 2 10 10 N 1.46900 * 109.47212 * 79.73271 * 9 8 3 11 11 C 1.46901 * 110.99890 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47401 * 34.99821 * 11 10 9 13 13 C 1.53002 * 109.46860 * 274.99873 * 11 10 9 14 14 C 1.53000 * 109.46769 * 155.00113 * 11 10 9 15 15 C 1.50698 * 109.46984 * 294.99593 * 14 11 10 16 16 H 1.08008 * 120.00253 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00032 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99811 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47359 * 59.99932 * 19 17 15 21 21 H 1.48500 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46855 * 299.99342 * 19 17 15 23 23 H 1.09006 * 109.47499 * 60.00074 * 1 2 3 24 24 H 1.09003 * 109.47609 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47168 * 300.00331 * 1 2 3 26 26 H 1.09006 * 109.46938 * 240.00169 * 2 1 3 27 27 H 1.08995 * 109.47060 * 119.99796 * 2 1 3 28 28 H 1.07999 * 120.00192 * 0.06677 * 4 3 2 29 29 H 1.08006 * 120.00361 * 179.83330 * 5 4 3 30 30 H 1.08003 * 119.99931 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.00016 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47143 * 319.72874 * 9 8 3 33 33 H 1.09005 * 109.47073 * 199.73472 * 9 8 3 34 34 H 1.00901 * 110.99385 * 303.95202 * 10 9 8 35 35 H 1.09002 * 109.47075 * 299.99593 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00550 * 13 11 10 37 37 H 1.09000 * 109.46986 * 180.02562 * 13 11 10 38 38 H 1.08990 * 109.47170 * 54.99770 * 14 11 10 39 39 H 1.09001 * 109.46952 * 174.99846 * 14 11 10 40 40 H 0.96997 * 119.99784 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3570 2.0392 -1.1931 5 6 2.8222 3.3406 -1.1928 6 6 2.9592 4.0255 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4348 2.4924 10 7 2.9075 0.5582 2.9109 11 6 2.5926 -0.1151 4.1779 12 1 1.5264 -0.3388 4.2154 13 6 2.9632 0.7994 5.3473 14 6 3.3906 -1.4169 4.2757 15 6 2.9375 -2.3661 3.1965 16 1 2.1585 -2.0703 2.5093 17 6 3.5173 -3.6122 3.0864 18 7 4.4661 -3.9722 3.9229 19 14 2.9561 -4.7885 1.7482 20 1 3.1821 -4.1689 0.4178 21 1 3.7305 -6.0520 1.8432 22 1 1.5100 -5.0797 1.9196 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.2497 1.5044 -2.1253 29 1 3.0785 3.8229 -2.1246 30 1 3.3232 5.0423 0.0008 31 1 2.7371 3.9438 2.1249 32 1 0.9009 0.8419 2.3573 33 1 1.6329 2.1918 3.2575 34 1 3.1298 -0.1122 2.1902 35 1 4.0294 1.0229 5.3099 36 1 2.3947 1.7267 5.2776 37 1 2.7299 0.2996 6.2874 38 1 4.4517 -1.2029 4.1493 39 1 3.2254 -1.8717 5.2525 40 1 4.8743 -4.8487 3.8452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:49 Heat of formation + Delta-G solvation = -17.791660 kcal Electronic energy + Delta-G solvation = -18173.472031 eV Core-core repulsion = 15565.135091 eV Total energy + Delta-G solvation = -2608.336940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64034 -38.09058 -35.26435 -34.74269 -33.25546 -30.76446 -30.01036 -29.28008 -26.23169 -24.99125 -24.37750 -22.59379 -21.32314 -21.05446 -18.52974 -17.34303 -17.06903 -16.59440 -16.27170 -16.01698 -15.45563 -14.84027 -14.69708 -14.35218 -14.12287 -13.99040 -13.52812 -13.52122 -13.22146 -13.14034 -12.91100 -12.65815 -12.64324 -12.53122 -12.41768 -12.15723 -12.05751 -11.57134 -11.45992 -11.21930 -11.01966 -10.57014 -9.66651 -9.48192 -9.13264 -8.19033 -6.29170 0.49872 0.56723 1.38415 1.40390 1.47724 2.39650 2.86455 3.13815 3.61591 3.87636 3.94294 4.08384 4.13524 4.30949 4.33914 4.42266 4.50098 4.56750 4.64476 4.68664 4.72021 4.77614 4.82026 5.01451 5.03342 5.09245 5.16792 5.20979 5.27443 5.33342 5.36501 5.51045 5.54291 5.67111 5.68475 5.83757 5.86140 6.19273 6.21748 6.41236 6.62279 6.85531 7.39250 8.92574 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.007057 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.449627 B = 3966.878598 C = 4840.508790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.085 4.085 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.090 4.090 9 C 0.098 3.902 10 N -0.679 5.679 11 C 0.094 3.906 12 H 0.026 0.974 13 C -0.127 4.127 14 C 0.027 3.973 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.953 3.047 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.342 0.658 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.053 0.947 38 H -0.005 1.005 39 H -0.004 1.004 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 14.084 -9.209 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.086 4.086 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.090 4.090 9 C -0.031 4.031 10 N -0.313 5.313 11 C -0.015 4.015 12 H 0.044 0.956 13 C -0.185 4.185 14 C -0.010 4.010 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.193 1.193 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.162 14.435 -8.842 18.014 hybrid contribution -0.540 -1.749 -0.507 1.900 sum -6.703 12.686 -9.348 17.124 Atomic orbital electron populations 1.21686 0.93741 1.01953 1.02182 1.20652 0.97228 0.92973 1.02569 1.19906 0.99326 0.95909 0.93435 1.21234 1.00183 0.95932 0.97354 1.21425 0.99118 0.94415 0.99089 1.21409 1.00321 1.00967 0.92129 1.21215 0.98437 0.94219 0.99164 1.19783 1.00358 0.94989 0.93904 1.20940 0.92255 0.95987 0.93874 1.60722 1.39332 1.25368 1.05894 1.21466 0.96575 0.93397 0.90098 0.95648 1.21709 1.01341 0.98900 0.96568 1.19137 0.94680 0.91653 0.95538 1.21472 1.20126 1.00040 1.15288 0.92350 1.25857 0.94997 1.00072 0.98278 1.70087 1.26907 1.21262 1.38778 0.85674 0.78527 0.78085 0.79906 1.18918 1.21113 1.19326 0.91287 0.92300 0.93090 0.90642 0.92758 0.84866 0.83686 0.83793 0.85267 0.94995 0.90134 0.83722 0.93314 0.91887 0.92809 0.98671 0.98553 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.75 71.98 0.70 -2.87 16 2 C -0.10 -2.90 5.39 29.85 0.16 -2.74 16 3 C -0.09 -2.48 5.12 -19.87 -0.10 -2.58 16 4 C -0.13 -3.17 9.68 22.27 0.22 -2.96 16 5 C -0.12 -2.62 10.05 22.27 0.22 -2.39 16 6 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 7 C -0.11 -2.91 9.67 22.27 0.22 -2.69 16 8 C -0.09 -2.70 5.39 -19.87 -0.11 -2.80 16 9 C 0.10 3.18 4.87 85.56 0.42 3.59 16 10 N -0.68 -26.79 6.28 -495.56 -3.11 -29.90 16 11 C 0.09 3.97 2.59 44.92 0.12 4.09 16 12 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 13 C -0.13 -4.54 9.41 71.98 0.68 -3.86 16 14 C 0.03 1.44 4.57 29.85 0.14 1.58 16 15 C -0.53 -29.46 8.12 25.60 0.21 -29.26 16 16 H 0.06 3.09 6.97 -2.91 -0.02 3.07 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 19 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.34 6.71 -2.39 -0.02 1.33 16 26 H 0.07 2.11 8.05 -2.38 -0.02 2.09 16 27 H 0.05 1.97 4.89 -2.39 -0.01 1.96 16 28 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.13 2.99 8.04 -2.91 -0.02 2.97 16 32 H 0.03 1.06 5.77 -2.39 -0.01 1.05 16 33 H 0.08 2.38 7.30 -2.38 -0.02 2.37 16 34 H 0.34 14.98 5.32 -89.69 -0.48 14.51 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.90 7.45 -2.39 -0.02 1.89 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -62.83 320.19 3.27 -59.55 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.53 Total: 25.40 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 3.55 Total: -44.70 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.83 Total: -86.16 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.83 3.27 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds