Wall clock time and date at job start Mon Mar 30 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47409 * 2 1 4 4 C 1.38255 * 120.00107 * 264.97650 * 3 2 1 5 5 C 1.38217 * 120.00155 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00088 * 359.97105 * 5 4 3 7 7 C 1.38215 * 119.99734 * 0.02885 * 6 5 4 8 8 C 1.38220 * 120.00215 * 84.99708 * 3 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 8 3 2 10 10 N 1.46904 * 109.47172 * 79.97480 * 9 8 3 11 11 C 1.46897 * 110.99929 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47002 * 325.00001 * 11 10 9 13 13 C 1.52992 * 109.47327 * 85.00388 * 11 10 9 14 14 C 1.53006 * 109.46923 * 205.00496 * 11 10 9 15 15 C 1.50698 * 109.47037 * 65.00003 * 14 11 10 16 16 H 1.08000 * 120.00189 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99852 * 179.97438 * 15 14 11 18 18 N 1.31511 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00012 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46986 * 60.00484 * 19 17 15 21 21 H 1.48504 * 109.46831 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47306 * 300.00312 * 19 17 15 23 23 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47616 * 300.00266 * 1 2 3 25 25 H 1.08998 * 109.46894 * 59.99924 * 1 2 3 26 26 H 1.09000 * 109.47616 * 239.99734 * 2 1 3 27 27 H 1.09008 * 109.46730 * 119.99503 * 2 1 3 28 28 H 1.08005 * 119.99800 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99701 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00047 * 180.29818 * 6 5 4 31 31 H 1.08000 * 119.99306 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47526 * 199.97942 * 9 8 3 33 33 H 1.09001 * 109.46858 * 319.98132 * 9 8 3 34 34 H 1.00898 * 111.00137 * 303.96101 * 10 9 8 35 35 H 1.09004 * 109.47149 * 59.99404 * 13 11 10 36 36 H 1.09002 * 109.47727 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.47334 * 299.99944 * 13 11 10 38 38 H 1.08999 * 109.47167 * 184.99888 * 14 11 10 39 39 H 1.08997 * 109.46790 * 305.00020 * 14 11 10 40 40 H 0.97003 * 120.00565 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3617 2.0375 -1.1927 5 6 2.8230 3.3404 -1.1927 6 6 2.9545 4.0272 0.0000 7 6 2.6253 3.4106 1.1924 8 6 2.1644 2.1071 1.1924 9 6 1.8053 1.4349 2.4925 10 7 2.9097 0.5627 2.9141 11 6 2.5941 -0.1112 4.1806 12 1 2.0088 0.5573 4.8120 13 6 1.7878 -1.3799 3.8962 14 6 3.8934 -0.4828 4.8981 15 6 4.6291 0.7734 5.2875 16 1 4.2116 1.7401 5.0476 17 6 5.8349 0.6885 5.9509 18 7 6.3430 -0.4886 6.2435 19 14 6.7473 2.2457 6.4330 20 1 5.8959 3.0579 7.3388 21 1 8.0083 1.8849 7.1295 22 1 7.0633 3.0318 5.2135 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.2592 1.5009 -2.1244 29 1 3.0806 3.8221 -2.1244 30 1 3.3104 5.0468 -0.0004 31 1 2.7285 3.9469 2.1241 32 1 1.6284 2.1921 3.2564 33 1 0.9032 0.8386 2.3561 34 1 3.1359 -0.1076 2.1947 35 1 2.3730 -2.0485 3.2647 36 1 1.5540 -1.8803 4.8359 37 1 0.8621 -1.1152 3.3850 38 1 3.6619 -1.0605 5.7930 39 1 4.5183 -1.0785 4.2327 40 1 7.1915 -0.5484 6.7099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695791183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:52 Heat of formation + Delta-G solvation = 2.842112 kcal Electronic energy + Delta-G solvation = -17990.725535 eV Core-core repulsion = 15383.283342 eV Total energy + Delta-G solvation = -2607.442193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60322 -36.60915 -34.15121 -32.86708 -31.76505 -29.59807 -28.83343 -27.20473 -24.93286 -23.63058 -22.78540 -21.57630 -20.34308 -19.61202 -16.36524 -16.09499 -15.78477 -15.11910 -14.82160 -14.39416 -13.85552 -13.75800 -13.44148 -13.26302 -13.00107 -12.60416 -12.39390 -11.94618 -11.76905 -11.69090 -11.64383 -11.44884 -11.24033 -11.04319 -10.63357 -10.61623 -10.52362 -10.32284 -9.99086 -9.24472 -8.95676 -8.63087 -8.45468 -8.20209 -7.49599 -5.83142 -3.80341 1.51222 1.58157 3.43962 3.47512 3.51322 3.89787 4.60803 4.80172 4.86267 5.01692 5.13037 5.15695 5.23759 5.36006 5.47289 5.54139 5.60359 5.64248 5.73637 5.77967 5.87473 5.91183 5.99861 6.00872 6.05783 6.14363 6.26418 6.31285 6.46749 6.64008 6.64781 6.69006 6.89752 7.05540 7.18983 7.59664 7.72847 8.05570 8.10870 8.21609 8.65175 9.24430 9.80534 11.29063 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.006322 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.960337 B = 4427.643624 C = 5431.087496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.078 4.078 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.127 4.127 7 C -0.097 4.097 8 C -0.066 4.066 9 C 0.093 3.907 10 N -0.656 5.656 11 C 0.088 3.912 12 H 0.064 0.936 13 C -0.181 4.181 14 C 0.034 3.966 15 C -0.486 4.486 16 H 0.057 0.943 17 C 0.049 3.951 18 N -0.905 5.905 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.278 1.278 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.330 0.670 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 3.527 -13.746 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.116 4.116 8 C -0.066 4.066 9 C -0.036 4.036 10 N -0.287 5.287 11 C -0.021 4.021 12 H 0.083 0.917 13 C -0.240 4.240 14 C -0.004 4.004 15 C -0.525 4.525 16 H 0.075 0.925 17 C -0.150 4.150 18 N -0.546 5.546 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.204 1.204 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.882 3.951 -13.336 17.660 hybrid contribution 0.080 0.219 -0.051 0.239 sum -10.801 4.170 -13.386 17.699 Atomic orbital electron populations 1.21746 0.94939 1.01530 1.02041 1.20593 0.96052 0.93065 1.02917 1.19728 0.99416 0.95909 0.92816 1.20923 1.00657 0.95225 0.97172 1.21034 1.00596 0.94918 0.97838 1.21096 1.00810 0.99878 0.92676 1.21084 0.97723 0.94706 0.98072 1.19782 0.98412 0.94138 0.94287 1.20972 0.92980 0.96581 0.93042 1.60657 1.37760 1.25155 1.05146 1.21829 0.98370 0.91653 0.90265 0.91731 1.22571 0.99449 1.00382 1.01568 1.19105 0.90136 0.96870 0.94254 1.21104 1.04322 0.92966 1.34119 0.92456 1.24999 0.97692 0.95604 0.96665 1.69952 1.19497 1.22833 1.42341 0.86707 0.79013 0.84011 0.78490 1.20581 1.21660 1.20409 0.92547 0.92442 0.92756 0.91194 0.90816 0.86609 0.86617 0.86446 0.85909 0.90723 0.94981 0.85057 0.93078 0.92419 0.94369 0.96463 0.96559 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.75 37.16 0.36 -1.13 16 2 C -0.09 -1.04 5.39 -27.89 -0.15 -1.19 16 3 C -0.08 -1.06 5.13 -104.63 -0.54 -1.59 16 4 C -0.12 -1.51 9.68 -39.58 -0.38 -1.89 16 5 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 6 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 7 C -0.10 -1.44 9.67 -39.58 -0.38 -1.82 16 8 C -0.07 -0.99 5.39 -104.62 -0.56 -1.56 16 9 C 0.09 1.48 4.87 -4.98 -0.02 1.45 16 10 N -0.66 -12.44 5.94 -107.99 -0.64 -13.08 16 11 C 0.09 1.78 2.53 -67.72 -0.17 1.61 16 12 H 0.06 1.33 7.80 -51.93 -0.40 0.92 16 13 C -0.18 -3.01 9.16 37.15 0.34 -2.67 16 14 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 15 C -0.49 -13.91 8.84 -34.44 -0.30 -14.22 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 18 N -0.91 -27.83 13.29 55.43 0.74 -27.09 16 19 Si 0.89 22.51 29.54 -169.99 -5.02 17.48 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 27 H 0.07 0.95 5.43 -51.92 -0.28 0.67 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.78 8.04 -52.49 -0.42 1.35 16 32 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 33 H 0.03 0.47 5.14 -51.93 -0.27 0.20 16 34 H 0.33 6.00 6.62 -39.29 -0.26 5.74 16 35 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -30.93 322.92 -9.44 -40.37 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.55 Total: 2.34 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -2.84 Total: -24.90 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.09 Total: -40.17 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.93 -9.44 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.217 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds