Wall clock time and date at job start Mon Mar 30 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47409 * 2 1 4 4 C 1.38255 * 120.00107 * 264.97650 * 3 2 1 5 5 C 1.38217 * 120.00155 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00088 * 359.97105 * 5 4 3 7 7 C 1.38215 * 119.99734 * 0.02885 * 6 5 4 8 8 C 1.38220 * 120.00215 * 84.99708 * 3 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 8 3 2 10 10 N 1.46904 * 109.47172 * 79.97480 * 9 8 3 11 11 C 1.46897 * 110.99929 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47002 * 325.00001 * 11 10 9 13 13 C 1.52992 * 109.47327 * 85.00388 * 11 10 9 14 14 C 1.53006 * 109.46923 * 205.00496 * 11 10 9 15 15 C 1.50698 * 109.47037 * 65.00003 * 14 11 10 16 16 H 1.08000 * 120.00189 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99852 * 179.97438 * 15 14 11 18 18 N 1.31511 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00012 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46986 * 60.00484 * 19 17 15 21 21 H 1.48504 * 109.46831 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47306 * 300.00312 * 19 17 15 23 23 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47616 * 300.00266 * 1 2 3 25 25 H 1.08998 * 109.46894 * 59.99924 * 1 2 3 26 26 H 1.09000 * 109.47616 * 239.99734 * 2 1 3 27 27 H 1.09008 * 109.46730 * 119.99503 * 2 1 3 28 28 H 1.08005 * 119.99800 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99701 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00047 * 180.29818 * 6 5 4 31 31 H 1.08000 * 119.99306 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47526 * 199.97942 * 9 8 3 33 33 H 1.09001 * 109.46858 * 319.98132 * 9 8 3 34 34 H 1.00898 * 111.00137 * 303.96101 * 10 9 8 35 35 H 1.09004 * 109.47149 * 59.99404 * 13 11 10 36 36 H 1.09002 * 109.47727 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.47334 * 299.99944 * 13 11 10 38 38 H 1.08999 * 109.47167 * 184.99888 * 14 11 10 39 39 H 1.08997 * 109.46790 * 305.00020 * 14 11 10 40 40 H 0.97003 * 120.00565 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3617 2.0375 -1.1927 5 6 2.8230 3.3404 -1.1927 6 6 2.9545 4.0272 0.0000 7 6 2.6253 3.4106 1.1924 8 6 2.1644 2.1071 1.1924 9 6 1.8053 1.4349 2.4925 10 7 2.9097 0.5627 2.9141 11 6 2.5941 -0.1112 4.1806 12 1 2.0088 0.5573 4.8120 13 6 1.7878 -1.3799 3.8962 14 6 3.8934 -0.4828 4.8981 15 6 4.6291 0.7734 5.2875 16 1 4.2116 1.7401 5.0476 17 6 5.8349 0.6885 5.9509 18 7 6.3430 -0.4886 6.2435 19 14 6.7473 2.2457 6.4330 20 1 5.8959 3.0579 7.3388 21 1 8.0083 1.8849 7.1295 22 1 7.0633 3.0318 5.2135 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.2592 1.5009 -2.1244 29 1 3.0806 3.8221 -2.1244 30 1 3.3104 5.0468 -0.0004 31 1 2.7285 3.9469 2.1241 32 1 1.6284 2.1921 3.2564 33 1 0.9032 0.8386 2.3561 34 1 3.1359 -0.1076 2.1947 35 1 2.3730 -2.0485 3.2647 36 1 1.5540 -1.8803 4.8359 37 1 0.8621 -1.1152 3.3850 38 1 3.6619 -1.0605 5.7930 39 1 4.5183 -1.0785 4.2327 40 1 7.1915 -0.5484 6.7099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:51 Heat of formation + Delta-G solvation = -14.422911 kcal Electronic energy + Delta-G solvation = -17991.474203 eV Core-core repulsion = 15383.283342 eV Total energy + Delta-G solvation = -2608.190860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64930 -38.11237 -35.28463 -34.66427 -33.24977 -30.77641 -30.04073 -29.03540 -26.16528 -25.00681 -24.37440 -22.63422 -21.55294 -21.11278 -18.38705 -17.30242 -16.88869 -16.56120 -16.27188 -16.09155 -15.22008 -14.71262 -14.63156 -14.45373 -14.23065 -13.98805 -13.75181 -13.48196 -13.22901 -13.12914 -12.85986 -12.73903 -12.64863 -12.47487 -12.39505 -12.11376 -11.94022 -11.57334 -11.49241 -11.11217 -11.10478 -10.47989 -9.67081 -9.47937 -8.95118 -8.09113 -6.13580 0.49431 0.55912 1.40139 1.43570 1.50752 2.47396 2.85523 3.23854 3.60085 3.88983 3.94662 4.07608 4.13705 4.25191 4.34398 4.38564 4.49605 4.54203 4.57918 4.66064 4.67661 4.77965 4.82856 4.97077 5.06793 5.09644 5.20503 5.23564 5.25427 5.30217 5.40266 5.51305 5.66084 5.67314 5.69180 5.84681 5.90705 6.19278 6.34007 6.49077 6.71516 6.99959 7.51585 9.02890 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.006322 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.960337 B = 4427.643624 C = 5431.087496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.088 4.088 9 C 0.102 3.898 10 N -0.674 5.674 11 C 0.098 3.902 12 H 0.059 0.941 13 C -0.169 4.169 14 C 0.038 3.962 15 C -0.498 4.498 16 H 0.054 0.946 17 C -0.007 4.007 18 N -0.941 5.941 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.334 0.666 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.066 0.934 38 H -0.007 1.007 39 H -0.011 1.011 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 4.354 -15.551 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.084 4.084 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.089 4.089 9 C -0.026 4.026 10 N -0.306 5.306 11 C -0.011 4.011 12 H 0.077 0.923 13 C -0.228 4.228 14 C 0.001 3.999 15 C -0.537 4.537 16 H 0.072 0.928 17 C -0.203 4.203 18 N -0.583 5.583 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.012 0.988 39 H 0.007 0.993 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.663 4.786 -15.147 19.707 hybrid contribution 0.315 -0.027 0.450 0.551 sum -11.347 4.759 -14.697 19.168 Atomic orbital electron populations 1.21713 0.93734 1.02375 1.01987 1.20626 0.97053 0.91975 1.02958 1.19965 0.99131 0.96689 0.92664 1.21282 0.99812 0.95545 0.97740 1.21421 0.99296 0.94890 0.98591 1.21360 1.00574 1.00873 0.92432 1.21212 0.98913 0.95099 0.98701 1.19790 1.00116 0.94563 0.94413 1.20872 0.92548 0.95821 0.93358 1.60477 1.39858 1.25512 1.04777 1.21488 0.95652 0.93400 0.90599 0.92270 1.22413 1.00011 0.98397 1.01983 1.18989 0.92408 0.95205 0.93305 1.21450 1.04708 0.93750 1.33770 0.92757 1.25857 0.98769 0.98832 0.96798 1.70083 1.19968 1.25005 1.43237 0.85645 0.77812 0.80079 0.78310 1.19401 1.21134 1.20014 0.91241 0.93382 0.91912 0.89719 0.92166 0.84085 0.83760 0.84641 0.86791 0.91940 0.93298 0.84649 0.92892 0.92374 0.91527 0.98834 0.99284 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.75 71.98 0.70 -1.85 16 2 C -0.09 -1.90 5.39 29.85 0.16 -1.74 16 3 C -0.08 -2.13 5.13 -19.87 -0.10 -2.23 16 4 C -0.13 -2.78 9.68 22.27 0.22 -2.57 16 5 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 6 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 7 C -0.12 -3.55 9.67 22.27 0.22 -3.33 16 8 C -0.09 -2.62 5.39 -19.87 -0.11 -2.73 16 9 C 0.10 3.23 4.87 85.55 0.42 3.64 16 10 N -0.67 -25.69 5.94 -495.58 -2.94 -28.64 16 11 C 0.10 4.00 2.53 44.92 0.11 4.12 16 12 H 0.06 2.46 7.80 -2.39 -0.02 2.44 16 13 C -0.17 -5.48 9.16 71.98 0.66 -4.82 16 14 C 0.04 2.04 4.65 29.85 0.14 2.18 16 15 C -0.50 -29.10 8.84 25.60 0.23 -28.88 16 16 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 18 N -0.94 -59.01 13.29 21.45 0.28 -58.73 16 19 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.95 6.72 -2.39 -0.02 0.93 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 27 H 0.06 1.46 5.43 -2.38 -0.01 1.44 16 28 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.11 3.40 8.04 -2.91 -0.02 3.37 16 32 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 33 H 0.05 1.36 5.14 -2.39 -0.01 1.35 16 34 H 0.33 12.13 6.62 -89.70 -0.59 11.54 16 35 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.78 7.45 -2.38 -0.02 1.77 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -67.03 322.92 3.32 -63.70 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.41 Total: 18.69 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.55 Total: -43.67 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -2.66 Total: -87.36 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -67.03 3.32 -63.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.279 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds