Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 5 5 C 1.50703 * 109.47393 * 174.99909 * 4 2 1 6 6 H 1.08000 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00125 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00051 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47105 * 89.99811 * 9 7 5 11 11 H 1.48499 * 109.47441 * 209.99851 * 9 7 5 12 12 H 1.48502 * 109.47219 * 329.99719 * 9 7 5 13 13 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 14 14 C 1.46902 * 110.99800 * 275.00438 * 13 2 1 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.99897 * 269.73240 * 17 16 15 19 19 C 1.38242 * 119.99948 * 179.76605 * 18 17 16 20 20 C 1.38235 * 119.99611 * 0.50253 * 19 18 17 21 21 C 1.38238 * 120.00126 * 359.74635 * 20 19 18 22 22 C 1.38234 * 120.00033 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 24 24 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.46849 * 294.99513 * 4 2 1 27 27 H 1.08998 * 109.47648 * 54.99485 * 4 2 1 28 28 H 0.97001 * 120.00114 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99696 * 151.04867 * 13 2 1 30 30 H 1.08993 * 109.47737 * 60.00169 * 14 13 2 31 31 H 1.09000 * 109.47263 * 299.99731 * 14 13 2 32 32 H 1.09000 * 109.47050 * 299.99824 * 15 14 13 33 33 H 1.09001 * 109.46801 * 59.99937 * 15 14 13 34 34 H 1.09000 * 109.47486 * 299.99829 * 16 15 14 35 35 H 1.09001 * 109.47362 * 60.00551 * 16 15 14 36 36 H 1.08006 * 120.00358 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.00083 * 180.22766 * 19 18 17 38 38 H 1.08001 * 120.00021 * 179.72810 * 20 19 18 39 39 H 1.08003 * 119.99873 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.99971 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0854 -0.5395 7 6 4.2305 -1.1935 -2.3576 8 7 5.5411 -1.1003 -2.4133 9 14 3.3017 -2.1088 -3.6952 10 1 2.9410 -1.1639 -4.7825 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7005 -3.1232 13 7 2.0197 -0.6924 1.1996 14 6 2.0823 0.2229 2.3469 15 6 2.5961 -0.5325 3.5743 16 6 2.6620 0.4209 4.7691 17 6 3.1675 -0.3233 5.9782 18 6 2.2745 -0.9486 6.8281 19 6 2.7385 -1.6353 7.9346 20 6 4.0948 -1.6878 8.1967 21 6 4.9874 -1.0581 7.3496 22 6 4.5237 -0.3754 6.2406 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2619 -2.1369 28 1 6.0255 -1.5071 -3.1487 29 1 2.9173 -1.1204 1.0289 30 1 1.0870 0.6166 2.5525 31 1 2.7587 1.0465 2.1182 32 1 1.9201 -1.3564 3.8032 33 1 3.5916 -0.9258 3.3683 34 1 3.3383 1.2444 4.5400 35 1 1.6667 0.8145 4.9752 36 1 1.2145 -0.9035 6.6260 37 1 2.0411 -2.1269 8.5966 38 1 4.4570 -2.2205 9.0636 39 1 6.0470 -1.0988 7.5546 40 1 5.2211 0.1169 5.5790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -4.134960 kcal Electronic energy + Delta-G solvation = -17066.736583 eV Core-core repulsion = 14458.991842 eV Total energy + Delta-G solvation = -2607.744741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35762 -36.98474 -34.58147 -32.58347 -31.24756 -30.94552 -28.68234 -27.83747 -24.90447 -22.67931 -22.62910 -21.37225 -20.72967 -19.29169 -16.83933 -16.80410 -15.67857 -15.32129 -15.00087 -14.55502 -14.35978 -13.87858 -13.48549 -13.32729 -13.05961 -12.70811 -12.39216 -12.10135 -11.93252 -11.84095 -11.56591 -11.24484 -11.18944 -11.12162 -10.78867 -10.61983 -10.43644 -10.27133 -9.74110 -9.43814 -9.20646 -8.98446 -8.71154 -8.55859 -7.66631 -6.06928 -4.05331 1.30261 1.33690 3.30879 3.38671 3.43799 3.72071 4.44580 4.66038 4.77845 4.88985 4.97462 5.06345 5.18743 5.29824 5.44700 5.48294 5.55976 5.61102 5.73972 5.84470 5.89439 5.99489 6.01082 6.06705 6.12974 6.23496 6.38614 6.40005 6.43343 6.44364 6.54732 6.64659 6.73622 6.81100 6.95341 7.17815 7.32592 7.76230 7.94443 8.26661 8.48570 8.94950 9.55942 11.06099 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003918 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.374426 B = 7144.146298 C = 7780.251010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.686 5.686 14 C 0.060 3.940 15 C -0.110 4.110 16 C -0.081 4.081 17 C -0.073 4.073 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.118 4.118 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.263 0.737 29 H 0.357 0.643 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 1.225 18.171 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.320 5.320 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.119 4.119 17 C -0.073 4.073 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.136 4.136 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.178 0.822 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.399 0.922 18.215 19.329 hybrid contribution 0.523 0.047 -0.993 1.123 sum -5.875 0.969 17.223 18.223 Atomic orbital electron populations 1.21826 0.96723 1.01305 0.99702 1.21377 0.93176 0.96005 0.90836 0.94828 1.19771 0.96951 0.96263 0.92506 1.21086 0.89929 1.35211 1.09918 0.91309 1.25009 0.94693 0.95678 0.97895 1.69917 1.06609 1.45269 1.32294 0.86755 0.80320 0.79892 0.82186 1.20410 1.21446 1.18839 1.60572 1.35026 1.32125 1.04278 1.21927 0.99488 0.94306 0.91244 1.21531 1.02012 0.98213 0.93017 1.20622 1.01431 0.97694 0.92144 1.19982 0.93481 0.97772 0.96101 1.21077 0.99570 0.98120 0.94906 1.21127 0.95662 0.99416 0.97666 1.21112 0.93547 1.00397 0.99829 1.21152 0.99593 0.97846 0.95118 1.21128 0.95197 0.99737 0.97491 0.93373 0.92697 0.94148 0.95643 0.96565 0.92735 0.82169 0.92065 0.95803 0.91256 0.91797 0.91026 0.91073 0.86127 0.86315 0.86416 0.86220 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.41 37.16 0.35 -2.01 16 2 C 0.10 1.95 2.59 -67.72 -0.18 1.77 16 3 H 0.03 0.71 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.41 3.64 -27.89 -0.10 -0.52 16 5 C -0.52 -14.61 8.67 -34.44 -0.30 -14.91 16 6 H 0.07 2.06 7.73 -52.49 -0.41 1.65 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 9 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 13 N -0.69 -13.17 6.31 -106.72 -0.67 -13.85 16 14 C 0.06 0.95 5.48 -3.82 -0.02 0.93 16 15 C -0.11 -1.52 5.46 -26.73 -0.15 -1.66 16 16 C -0.08 -0.94 5.35 -27.88 -0.15 -1.09 16 17 C -0.07 -0.86 5.13 -104.62 -0.54 -1.40 16 18 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 19 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 20 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 26 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.36 7.63 7.21 -39.29 -0.28 7.35 16 30 H 0.06 0.91 7.44 -51.93 -0.39 0.52 16 31 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -29.98 327.03 -9.64 -39.62 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.86 Total: 4.36 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.14 Total: -25.38 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.10 Total: -40.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.98 -9.64 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.487 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds