Wall clock time and date at job start Mon Mar 30 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 5 5 C 1.50703 * 109.47393 * 174.99909 * 4 2 1 6 6 H 1.08000 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00125 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00051 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47105 * 89.99811 * 9 7 5 11 11 H 1.48499 * 109.47441 * 209.99851 * 9 7 5 12 12 H 1.48502 * 109.47219 * 329.99719 * 9 7 5 13 13 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 14 14 C 1.46902 * 110.99800 * 275.00438 * 13 2 1 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.99897 * 269.73240 * 17 16 15 19 19 C 1.38242 * 119.99948 * 179.76605 * 18 17 16 20 20 C 1.38235 * 119.99611 * 0.50253 * 19 18 17 21 21 C 1.38238 * 120.00126 * 359.74635 * 20 19 18 22 22 C 1.38234 * 120.00033 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 24 24 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.46849 * 294.99513 * 4 2 1 27 27 H 1.08998 * 109.47648 * 54.99485 * 4 2 1 28 28 H 0.97001 * 120.00114 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99696 * 151.04867 * 13 2 1 30 30 H 1.08993 * 109.47737 * 60.00169 * 14 13 2 31 31 H 1.09000 * 109.47263 * 299.99731 * 14 13 2 32 32 H 1.09000 * 109.47050 * 299.99824 * 15 14 13 33 33 H 1.09001 * 109.46801 * 59.99937 * 15 14 13 34 34 H 1.09000 * 109.47486 * 299.99829 * 16 15 14 35 35 H 1.09001 * 109.47362 * 60.00551 * 16 15 14 36 36 H 1.08006 * 120.00358 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.00083 * 180.22766 * 19 18 17 38 38 H 1.08001 * 120.00021 * 179.72810 * 20 19 18 39 39 H 1.08003 * 119.99873 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.99971 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0854 -0.5395 7 6 4.2305 -1.1935 -2.3576 8 7 5.5411 -1.1003 -2.4133 9 14 3.3017 -2.1088 -3.6952 10 1 2.9410 -1.1639 -4.7825 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7005 -3.1232 13 7 2.0197 -0.6924 1.1996 14 6 2.0823 0.2229 2.3469 15 6 2.5961 -0.5325 3.5743 16 6 2.6620 0.4209 4.7691 17 6 3.1675 -0.3233 5.9782 18 6 2.2745 -0.9486 6.8281 19 6 2.7385 -1.6353 7.9346 20 6 4.0948 -1.6878 8.1967 21 6 4.9874 -1.0581 7.3496 22 6 4.5237 -0.3754 6.2406 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2619 -2.1369 28 1 6.0255 -1.5071 -3.1487 29 1 2.9173 -1.1204 1.0289 30 1 1.0870 0.6166 2.5525 31 1 2.7587 1.0465 2.1182 32 1 1.9201 -1.3564 3.8032 33 1 3.5916 -0.9258 3.3683 34 1 3.3383 1.2444 4.5400 35 1 1.6667 0.8145 4.9752 36 1 1.2145 -0.9035 6.6260 37 1 2.0411 -2.1269 8.5966 38 1 4.4570 -2.2205 9.0636 39 1 6.0470 -1.0988 7.5546 40 1 5.2211 0.1169 5.5790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:18 Heat of formation + Delta-G solvation = -20.802913 kcal Electronic energy + Delta-G solvation = -17067.459360 eV Core-core repulsion = 14458.991842 eV Total energy + Delta-G solvation = -2608.467518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17947 -38.49501 -35.84438 -34.54209 -32.60204 -31.73567 -30.08460 -29.46055 -26.07789 -24.51159 -23.42731 -22.56328 -21.75078 -20.92410 -18.97326 -17.62919 -16.93322 -16.48624 -16.30324 -16.10173 -15.73474 -15.17997 -14.58686 -14.54205 -14.21775 -13.96296 -13.91666 -13.60061 -13.36048 -13.26404 -12.94904 -12.56528 -12.41158 -12.34471 -12.19138 -11.94489 -11.73756 -11.65517 -11.49890 -11.26980 -11.16618 -10.76938 -9.79292 -9.55631 -9.22013 -8.29282 -6.32717 0.48169 0.52791 1.36014 1.38522 1.50656 2.36641 2.89139 3.04917 3.43612 3.86814 3.94581 4.15194 4.19737 4.26802 4.30537 4.38088 4.50500 4.54225 4.59636 4.67013 4.72167 4.78254 4.82286 4.89674 5.02839 5.12223 5.15081 5.19476 5.22298 5.26969 5.31094 5.41580 5.51886 5.61065 5.65085 5.67771 5.78241 6.16602 6.23116 6.39513 6.57970 6.73734 7.31916 8.86941 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003918 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.374426 B = 7144.146298 C = 7780.251010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.095 3.905 3 H 0.019 0.981 4 C -0.013 4.013 5 C -0.526 4.526 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.688 5.688 14 C 0.062 3.938 15 C -0.099 4.099 16 C -0.073 4.073 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.129 4.129 22 C -0.138 4.138 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.339 0.661 30 H 0.080 0.920 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 0.650 18.917 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.037 0.963 4 C -0.051 4.051 5 C -0.564 4.564 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.320 5.320 14 C -0.067 4.067 15 C -0.136 4.136 16 C -0.110 4.110 17 C -0.090 4.090 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.156 4.156 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.615 0.364 18.980 20.847 hybrid contribution 1.272 0.261 -1.124 1.718 sum -7.343 0.625 17.856 19.317 Atomic orbital electron populations 1.21734 0.93565 1.01936 1.01404 1.21361 0.95591 0.94637 0.89842 0.96256 1.19721 0.94069 0.96633 0.94672 1.21356 0.92181 1.34108 1.08710 0.95005 1.25953 0.95508 0.96829 1.00666 1.70065 1.08515 1.46915 1.33520 0.85662 0.79328 0.78626 0.79021 1.19318 1.21190 1.17162 1.60695 1.33757 1.32757 1.04770 1.22011 1.00347 0.93609 0.90753 1.21406 1.00661 0.98472 0.93110 1.20527 1.02334 0.96997 0.91174 1.20057 0.93802 0.98647 0.96531 1.21322 1.00196 0.98054 0.95087 1.21477 0.96288 0.98972 0.97628 1.21467 0.93578 0.99944 1.00290 1.21427 1.00767 0.97652 0.94889 1.21297 0.95445 1.00586 0.98275 0.92121 0.92535 0.92094 0.95804 0.95911 0.92590 0.84192 0.90135 0.97058 0.91209 0.93755 0.91221 0.89494 0.84805 0.83964 0.84064 0.84690 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.41 71.98 0.68 -3.39 16 2 C 0.10 3.81 2.59 44.91 0.12 3.93 16 3 H 0.02 0.82 7.80 -2.38 -0.02 0.80 16 4 C -0.01 -0.63 3.64 29.85 0.11 -0.52 16 5 C -0.53 -29.98 8.67 25.60 0.22 -29.76 16 6 H 0.03 1.99 7.73 -2.91 -0.02 1.97 16 7 C 0.01 0.43 5.47 84.65 0.46 0.90 16 8 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 9 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 N -0.69 -26.38 6.31 -491.56 -3.10 -29.48 16 14 C 0.06 1.95 5.48 86.31 0.47 2.42 16 15 C -0.10 -2.72 5.46 30.60 0.17 -2.55 16 16 C -0.07 -1.64 5.35 29.85 0.16 -1.48 16 17 C -0.09 -2.08 5.13 -19.86 -0.10 -2.18 16 18 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 19 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 20 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 21 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 22 C -0.14 -3.20 9.70 22.27 0.22 -2.99 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.67 7.45 -2.39 -0.02 1.66 16 26 H 0.02 1.13 7.20 -2.38 -0.02 1.11 16 27 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.34 14.98 7.21 -89.69 -0.65 14.34 16 30 H 0.08 2.23 7.44 -2.39 -0.02 2.21 16 31 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 35 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 36 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -64.94 327.03 2.75 -62.18 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.28 Total: 24.67 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 3.39 Total: -44.67 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.80 Total: -88.69 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -64.94 2.75 -62.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.379 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds