Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46908 * 110.99955 * 85.00186 * 13 2 1 15 15 C 1.52998 * 109.47053 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46674 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46796 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00185 * 269.72295 * 17 16 15 19 19 C 1.38233 * 119.99647 * 179.76705 * 18 17 16 20 20 C 1.38234 * 120.00495 * 0.51184 * 19 18 17 21 21 C 1.38239 * 119.99580 * 359.74305 * 20 19 18 22 22 C 1.38235 * 119.99541 * 90.00397 * 17 16 15 23 23 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 24 24 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 25 25 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 27 27 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.00893 * 111.00197 * 321.04661 * 13 2 1 30 30 H 1.09002 * 109.46917 * 299.99973 * 14 13 2 31 31 H 1.09003 * 109.46816 * 60.00118 * 14 13 2 32 32 H 1.09002 * 109.47394 * 299.99873 * 15 14 13 33 33 H 1.09003 * 109.47056 * 60.00457 * 15 14 13 34 34 H 1.08993 * 109.47391 * 300.00238 * 16 15 14 35 35 H 1.09005 * 109.47437 * 60.00494 * 16 15 14 36 36 H 1.08003 * 119.99905 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.99597 * 180.23860 * 19 18 17 38 38 H 1.07998 * 120.00484 * 179.72735 * 20 19 18 39 39 H 1.07998 * 119.99726 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00299 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.7008 -2.2167 1.7303 11 1 6.5266 0.2014 1.7869 12 1 6.5287 -1.0628 3.8562 13 7 2.0196 -0.6926 -1.1993 14 6 2.0824 0.2224 -2.3469 15 6 2.5962 -0.5332 -3.5741 16 6 2.6609 0.4196 -4.7694 17 6 3.1676 -0.3245 -5.9780 18 6 4.5235 -0.3706 -6.2431 19 6 4.9885 -1.0572 -7.3491 20 6 4.0968 -1.6888 -8.1959 21 6 2.7405 -1.6382 -7.9336 22 6 2.2759 -0.9560 -6.8247 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7516 -1.7714 1.2058 27 1 1.6053 -0.2616 2.1370 28 1 2.6093 -1.9019 3.2614 29 1 1.4495 -1.4980 -1.4098 30 1 1.0870 0.6161 -2.5526 31 1 2.7589 1.0460 -2.1183 32 1 3.5917 -0.9266 -3.3682 33 1 1.9200 -1.3570 -3.8029 34 1 1.6654 0.8127 -4.9751 35 1 3.3368 1.2438 -4.5409 36 1 5.2198 0.1263 -5.5839 37 1 6.0481 -1.0964 -7.5541 38 1 4.4598 -2.2215 -9.0624 39 1 2.0438 -2.1313 -8.5954 40 1 1.2162 -0.9165 -6.6199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = -6.195347 kcal Electronic energy + Delta-G solvation = -17076.603211 eV Core-core repulsion = 14468.769124 eV Total energy + Delta-G solvation = -2607.834086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41053 -37.09908 -34.65328 -32.81915 -31.10278 -30.99557 -28.54587 -26.88230 -24.85700 -22.81808 -22.67971 -21.57910 -20.86283 -19.78562 -16.89698 -16.64449 -15.67288 -15.38892 -14.84206 -14.54433 -14.07895 -13.62826 -13.53153 -13.29445 -13.15985 -13.04349 -12.73625 -12.17936 -11.93935 -11.59373 -11.41743 -11.18177 -11.13384 -11.02145 -10.79992 -10.65702 -10.47799 -10.19627 -10.00510 -9.53076 -9.03400 -8.76141 -8.40829 -8.16293 -7.56091 -6.16815 -3.81310 1.25255 1.28772 3.53808 3.57710 3.67042 3.73258 4.58750 4.69218 4.72501 4.82610 4.91120 5.00746 5.12367 5.37783 5.42383 5.48481 5.52413 5.60470 5.65876 5.67922 5.77542 5.89430 5.91578 5.94039 5.99655 6.01421 6.29175 6.34647 6.38268 6.39861 6.49124 6.55437 6.60120 6.90323 6.92255 7.36548 7.48695 7.92458 8.10458 8.46390 8.71292 9.09586 9.87326 11.23856 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.004225 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.032629 B = 6625.988022 C = 7595.761524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.096 3.904 3 H 0.064 0.936 4 C 0.019 3.981 5 C -0.568 4.568 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.925 5.925 9 Si 1.071 2.929 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.664 5.664 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.081 4.081 17 C -0.074 4.074 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.265 0.735 29 H 0.329 0.671 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 3.183 -21.348 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.013 4.013 3 H 0.083 0.917 4 C -0.018 4.018 5 C -0.607 4.607 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.563 5.563 9 Si 0.901 3.099 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.294 5.294 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.770 2.861 -20.274 20.490 hybrid contribution -2.348 0.434 -1.208 2.676 sum -3.118 3.296 -21.482 21.956 Atomic orbital electron populations 1.22575 0.99605 1.01129 1.00679 1.21615 0.89663 0.98049 0.92001 0.91744 1.19240 0.97366 0.94719 0.90476 1.21965 0.91597 1.37047 1.10079 0.93013 1.25773 1.06622 0.94125 0.93021 1.70755 1.10035 1.41213 1.34335 0.83516 0.74844 0.75897 0.75693 1.21710 1.21715 1.21390 1.60482 1.57661 1.08626 1.02618 1.21956 0.98190 0.96037 0.90684 1.21533 1.02792 0.97704 0.92710 1.20620 1.01365 0.97776 0.92126 1.19972 0.93529 0.97776 0.96098 1.21128 0.95163 0.99679 0.97487 1.21157 0.99617 0.97764 0.95126 1.21118 0.93531 1.00360 0.99828 1.21126 0.95686 0.99437 0.97613 1.21064 0.99504 0.98239 0.94981 0.92572 0.94226 0.93117 0.97515 0.97535 0.92426 0.85352 0.96565 0.91427 0.90717 0.92344 0.91277 0.90835 0.85910 0.86179 0.86376 0.86312 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.16 37.16 0.34 -2.76 16 2 C 0.10 2.00 2.53 -67.72 -0.17 1.83 16 3 H 0.06 1.38 7.80 -51.93 -0.41 0.98 16 4 C 0.02 0.50 3.97 -27.88 -0.11 0.39 16 5 C -0.57 -16.56 8.84 -34.44 -0.30 -16.86 16 6 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.01 0.19 5.46 -17.82 -0.10 0.09 16 8 N -0.93 -29.26 13.65 55.43 0.76 -28.50 16 9 Si 1.07 26.50 29.90 -169.99 -5.08 21.42 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 N -0.66 -12.72 5.96 -106.72 -0.64 -13.36 16 14 C 0.06 0.94 5.48 -3.82 -0.02 0.92 16 15 C -0.11 -1.47 5.46 -26.73 -0.15 -1.61 16 16 C -0.08 -0.90 5.35 -27.88 -0.15 -1.05 16 17 C -0.07 -0.84 5.13 -104.62 -0.54 -1.38 16 18 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 19 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 20 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 25 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 27 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 28 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 29 H 0.33 5.91 8.47 -39.30 -0.33 5.57 16 30 H 0.02 0.23 7.44 -51.93 -0.39 -0.15 16 31 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -32.07 330.97 -10.04 -42.10 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.90 Total: 1.94 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -3.16 Total: -28.59 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.12 Total: -41.86 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.08 Total: 21.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.07 -10.04 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.909 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds