Wall clock time and date at job start Mon Mar 30 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38300 * 119.92813 * 264.73162 * 3 2 1 5 5 C 1.38081 * 120.07588 * 179.72769 * 4 3 2 6 6 C 1.38939 * 119.92182 * 0.54089 * 5 4 3 7 7 N 1.39673 * 120.07439 * 179.75084 * 6 5 4 8 8 C 1.46501 * 120.00008 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.47374 * 34.99928 * 8 7 6 10 10 C 1.53006 * 109.47312 * 274.99966 * 8 7 6 11 11 C 1.52998 * 109.47203 * 155.00063 * 8 7 6 12 12 C 1.50699 * 109.47276 * 294.99911 * 11 8 7 13 13 H 1.08004 * 119.99530 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00087 * 180.02562 * 12 11 8 15 15 N 1.31509 * 120.00317 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47318 * 59.99606 * 16 14 12 18 18 H 1.48502 * 109.47067 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47065 * 299.99737 * 16 14 12 20 20 C 1.38887 * 119.84962 * 359.73199 * 6 5 4 21 21 C 1.38122 * 119.92548 * 359.97438 * 20 6 5 22 22 C 1.50710 * 119.96114 * 180.02562 * 21 20 6 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08000 * 119.96158 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.03895 * 180.27104 * 5 4 3 30 30 H 0.96998 * 120.00204 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.46579 * 59.99957 * 10 8 7 32 32 H 1.09001 * 109.47337 * 180.02562 * 10 8 7 33 33 H 1.08997 * 109.46870 * 300.00271 * 10 8 7 34 34 H 1.08997 * 109.47458 * 55.00115 * 11 8 7 35 35 H 1.09004 * 109.46892 * 174.99997 * 11 8 7 36 36 H 0.96996 * 120.00327 * 180.02562 * 15 14 12 37 37 H 1.08008 * 120.03250 * 180.02562 * 20 6 5 38 38 H 1.08998 * 109.46758 * 269.97641 * 22 21 20 39 39 H 1.09001 * 109.46815 * 29.97452 * 22 21 20 40 40 H 1.08990 * 109.46848 * 149.97762 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3662 2.0346 -1.1935 5 6 2.8214 3.3382 -1.1976 6 6 2.9547 4.0295 0.0002 7 7 3.4199 5.3465 0.0002 8 6 3.7684 6.0003 -1.2636 9 1 3.0931 5.6584 -2.0479 10 6 5.2085 5.6467 -1.6407 11 6 3.6403 7.5167 -1.1057 12 6 2.1982 7.8757 -0.8556 13 1 1.4482 7.0998 -0.8130 14 6 1.8364 9.1946 -0.6810 15 7 2.7498 10.1394 -0.7323 16 14 0.0489 9.6395 -0.3702 17 1 -0.4188 8.9718 0.8710 18 1 -0.0755 11.1113 -0.2171 19 1 -0.7799 9.1889 -1.5171 20 6 2.6240 3.4081 1.1975 21 6 2.1634 2.1060 1.1938 22 6 1.8038 1.4311 2.4924 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.2668 1.4951 -2.1238 29 1 3.0777 3.8185 -2.1303 30 1 3.5122 5.8283 0.8371 31 1 5.2997 4.5663 -1.7532 32 1 5.4679 6.1335 -2.5808 33 1 5.8837 5.9887 -0.8564 34 1 4.2482 7.8470 -0.2635 35 1 3.9841 8.0072 -2.0164 36 1 2.4953 11.0673 -0.6091 37 1 2.7261 3.9429 2.1303 38 1 2.6821 0.9265 2.8950 39 1 1.4551 2.1780 3.2056 40 1 1.0142 0.7008 2.3158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:54 Heat of formation + Delta-G solvation = -6.341098 kcal Electronic energy + Delta-G solvation = -17734.616232 eV Core-core repulsion = 15126.775826 eV Total energy + Delta-G solvation = -2607.840407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42407 -36.73444 -33.88487 -32.49178 -32.02119 -30.64972 -27.48731 -27.34915 -26.55410 -23.44709 -22.79035 -21.85431 -20.44906 -19.10066 -16.71720 -16.24732 -15.80337 -15.08807 -14.62620 -14.27858 -13.87184 -13.73775 -13.07104 -13.02263 -12.78554 -12.74058 -12.46495 -12.10309 -11.98418 -11.81437 -11.59849 -11.46956 -11.31400 -11.00281 -10.76578 -10.67238 -10.50754 -10.46880 -10.15542 -9.49094 -9.34125 -9.01352 -8.42650 -8.30259 -6.67608 -6.05387 -4.07559 1.85157 2.07114 3.31141 3.35428 3.39060 4.17593 4.26978 4.42744 5.04856 5.07398 5.29473 5.29961 5.31431 5.49135 5.57068 5.68610 5.74715 5.78751 5.84019 5.86792 5.93564 5.97026 6.01517 6.06192 6.18833 6.28249 6.35360 6.46034 6.49941 6.65733 6.80218 6.88255 6.91026 7.12908 7.34283 7.51753 7.57463 7.91987 8.12853 8.34132 8.49596 8.98653 9.57188 11.05567 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.005377 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.174345 B = 5206.206580 C = 5777.348849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.166 4.166 4 C -0.065 4.065 5 C -0.208 4.208 6 C 0.237 3.763 7 N -0.717 5.717 8 C 0.147 3.853 9 H 0.067 0.933 10 C -0.164 4.164 11 C 0.016 3.984 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.208 4.208 21 C -0.036 4.036 22 C -0.116 4.116 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.399 0.601 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 -17.061 2.301 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.168 4.168 4 C -0.084 4.084 5 C -0.231 4.231 6 C 0.129 3.871 7 N -0.341 5.341 8 C 0.042 3.958 9 H 0.085 0.915 10 C -0.223 4.223 11 C -0.021 4.021 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.231 4.231 21 C -0.037 4.037 22 C -0.172 4.172 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.234 0.766 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.018 -16.729 2.114 16.862 hybrid contribution -0.934 0.747 0.431 1.272 sum -0.952 -15.982 2.545 16.212 Atomic orbital electron populations 1.21790 0.95742 1.00751 1.02205 1.20319 0.95402 0.93466 1.01627 1.19254 1.08223 0.96569 0.92749 1.20645 0.96892 0.94111 0.96768 1.20642 1.10047 0.95600 0.96803 1.17937 0.90453 0.85217 0.93450 1.44993 1.69621 1.09905 1.09594 1.21189 0.93080 0.96266 0.85252 0.91516 1.22292 0.98485 1.00275 1.01218 1.19383 0.97500 0.87263 0.97985 1.21145 0.93304 0.92162 1.48834 0.92533 1.24995 0.97268 0.96628 0.95411 1.69942 1.33038 1.00325 1.50221 0.86669 0.85421 0.77127 0.78867 1.20306 1.21323 1.20254 1.20380 1.10488 0.95841 0.96441 1.19322 0.96814 0.93261 0.94310 1.20838 1.01307 1.00365 0.94712 0.92645 0.92708 0.93223 0.91871 0.92065 0.87076 0.86275 0.76627 0.93649 0.92351 0.93019 0.96147 0.95179 0.92915 0.86798 0.91660 0.91968 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.70 37.16 0.36 -1.16 16 2 C -0.07 -0.78 5.37 -27.88 -0.15 -0.93 16 3 C -0.17 -2.33 5.14 -104.59 -0.54 -2.86 16 4 C -0.07 -0.97 9.67 -39.62 -0.38 -1.36 16 5 C -0.21 -3.50 8.85 -39.38 -0.35 -3.85 16 6 C 0.24 4.22 6.64 -83.79 -0.56 3.66 16 7 N -0.72 -13.60 4.96 -52.16 -0.26 -13.86 16 8 C 0.15 2.93 2.21 -67.93 -0.15 2.78 16 9 H 0.07 1.37 6.48 -51.93 -0.34 1.04 16 10 C -0.16 -2.80 9.43 37.16 0.35 -2.45 16 11 C 0.02 0.39 4.52 -27.88 -0.13 0.27 16 12 C -0.52 -14.12 8.84 -34.44 -0.30 -14.42 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.21 -3.39 9.55 -39.38 -0.38 -3.77 16 21 C -0.04 -0.53 5.88 -104.65 -0.62 -1.14 16 22 C -0.12 -1.31 9.21 36.01 0.33 -0.98 16 23 H 0.05 0.59 6.90 -51.93 -0.36 0.23 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.64 6.98 -51.93 -0.36 0.28 16 27 H 0.06 0.62 8.05 -51.93 -0.42 0.21 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.99 6.12 -52.49 -0.32 1.67 16 30 H 0.40 7.59 8.61 -40.82 -0.35 7.24 16 31 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.07 0.68 5.41 -51.93 -0.28 0.40 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -28.91 323.08 -8.87 -37.78 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.60 Total: 4.82 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.60 Total: -24.68 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.48 Total: -39.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.91 -8.87 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.441 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds