Wall clock time and date at job start Mon Mar 30 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38300 * 119.92813 * 264.73162 * 3 2 1 5 5 C 1.38081 * 120.07588 * 179.72769 * 4 3 2 6 6 C 1.38939 * 119.92182 * 0.54089 * 5 4 3 7 7 N 1.39673 * 120.07439 * 179.75084 * 6 5 4 8 8 C 1.46501 * 120.00008 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.47374 * 34.99928 * 8 7 6 10 10 C 1.53006 * 109.47312 * 274.99966 * 8 7 6 11 11 C 1.52998 * 109.47203 * 155.00063 * 8 7 6 12 12 C 1.50699 * 109.47276 * 294.99911 * 11 8 7 13 13 H 1.08004 * 119.99530 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00087 * 180.02562 * 12 11 8 15 15 N 1.31509 * 120.00317 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47318 * 59.99606 * 16 14 12 18 18 H 1.48502 * 109.47067 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47065 * 299.99737 * 16 14 12 20 20 C 1.38887 * 119.84962 * 359.73199 * 6 5 4 21 21 C 1.38122 * 119.92548 * 359.97438 * 20 6 5 22 22 C 1.50710 * 119.96114 * 180.02562 * 21 20 6 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08000 * 119.96158 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.03895 * 180.27104 * 5 4 3 30 30 H 0.96998 * 120.00204 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.46579 * 59.99957 * 10 8 7 32 32 H 1.09001 * 109.47337 * 180.02562 * 10 8 7 33 33 H 1.08997 * 109.46870 * 300.00271 * 10 8 7 34 34 H 1.08997 * 109.47458 * 55.00115 * 11 8 7 35 35 H 1.09004 * 109.46892 * 174.99997 * 11 8 7 36 36 H 0.96996 * 120.00327 * 180.02562 * 15 14 12 37 37 H 1.08008 * 120.03250 * 180.02562 * 20 6 5 38 38 H 1.08998 * 109.46758 * 269.97641 * 22 21 20 39 39 H 1.09001 * 109.46815 * 29.97452 * 22 21 20 40 40 H 1.08990 * 109.46848 * 149.97762 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3662 2.0346 -1.1935 5 6 2.8214 3.3382 -1.1976 6 6 2.9547 4.0295 0.0002 7 7 3.4199 5.3465 0.0002 8 6 3.7684 6.0003 -1.2636 9 1 3.0931 5.6584 -2.0479 10 6 5.2085 5.6467 -1.6407 11 6 3.6403 7.5167 -1.1057 12 6 2.1982 7.8757 -0.8556 13 1 1.4482 7.0998 -0.8130 14 6 1.8364 9.1946 -0.6810 15 7 2.7498 10.1394 -0.7323 16 14 0.0489 9.6395 -0.3702 17 1 -0.4188 8.9718 0.8710 18 1 -0.0755 11.1113 -0.2171 19 1 -0.7799 9.1889 -1.5171 20 6 2.6240 3.4081 1.1975 21 6 2.1634 2.1060 1.1938 22 6 1.8038 1.4311 2.4924 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.2668 1.4951 -2.1238 29 1 3.0777 3.8185 -2.1303 30 1 3.5122 5.8283 0.8371 31 1 5.2997 4.5663 -1.7532 32 1 5.4679 6.1335 -2.5808 33 1 5.8837 5.9887 -0.8564 34 1 4.2482 7.8470 -0.2635 35 1 3.9841 8.0072 -2.0164 36 1 2.4953 11.0673 -0.6091 37 1 2.7261 3.9429 2.1303 38 1 2.6821 0.9265 2.8950 39 1 1.4551 2.1780 3.2056 40 1 1.0142 0.7008 2.3158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:54 Heat of formation + Delta-G solvation = -20.716113 kcal Electronic energy + Delta-G solvation = -17735.239580 eV Core-core repulsion = 15126.775826 eV Total energy + Delta-G solvation = -2608.463754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63811 -38.16532 -35.40102 -34.20743 -33.14067 -32.00988 -29.35723 -28.55145 -27.63794 -25.22232 -23.99822 -23.08367 -21.82283 -20.44651 -18.54410 -17.92512 -17.11057 -16.49333 -16.19488 -15.65554 -15.00486 -14.95485 -14.58403 -14.23895 -14.08925 -13.92232 -13.66693 -13.46863 -13.33553 -13.21545 -13.04910 -12.82454 -12.68995 -12.57340 -12.44815 -12.18014 -11.88712 -11.54632 -11.40965 -11.32846 -11.23077 -10.60586 -10.48227 -9.49068 -8.22162 -8.01522 -6.30415 0.64294 0.85957 1.36840 1.37855 1.46257 2.38119 2.73661 3.05461 3.13208 4.00831 4.08278 4.19120 4.26976 4.37639 4.48564 4.51592 4.52893 4.67035 4.70193 4.77533 4.84928 4.90464 4.92498 5.04306 5.09039 5.13963 5.18598 5.21791 5.26348 5.36515 5.43098 5.49760 5.56631 5.65451 5.73405 5.78765 5.98049 6.19861 6.24172 6.69734 6.83233 7.03390 7.38216 8.89231 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.005377 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.174345 B = 5206.206580 C = 5777.348849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.162 4.162 4 C -0.070 4.070 5 C -0.224 4.224 6 C 0.212 3.788 7 N -0.727 5.727 8 C 0.160 3.840 9 H 0.059 0.941 10 C -0.153 4.153 11 C 0.023 3.977 12 C -0.525 4.525 13 H 0.050 0.950 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.955 3.045 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.221 4.221 21 C -0.042 4.042 22 C -0.114 4.114 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.394 0.606 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.000 1.000 35 H 0.009 0.991 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -19.449 2.737 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.164 4.164 4 C -0.089 4.089 5 C -0.247 4.247 6 C 0.107 3.893 7 N -0.353 5.353 8 C 0.055 3.945 9 H 0.077 0.923 10 C -0.212 4.212 11 C -0.014 4.014 12 C -0.563 4.563 13 H 0.069 0.931 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.780 3.220 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.244 4.244 21 C -0.043 4.043 22 C -0.170 4.170 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.228 0.772 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.018 0.982 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.135 -19.157 2.548 19.359 hybrid contribution -0.605 1.387 0.306 1.543 sum -1.740 -17.770 2.855 18.082 Atomic orbital electron populations 1.21772 0.95047 1.01994 1.01523 1.20392 0.95863 0.91414 1.03022 1.19702 1.06498 0.98050 0.92169 1.20954 0.96215 0.93467 0.98267 1.20759 1.10992 0.96629 0.96303 1.18154 0.91845 0.84792 0.94537 1.44835 1.71129 1.10652 1.08651 1.20858 0.94783 0.93106 0.85759 0.92341 1.22168 0.96327 1.01255 1.01421 1.19236 0.95735 0.90546 0.95929 1.21426 0.94458 0.92164 1.48301 0.93135 1.25801 1.01416 0.96662 0.95294 1.70054 1.35021 1.00645 1.51291 0.85658 0.80430 0.77024 0.78858 1.19802 1.20690 1.19654 1.20583 1.10850 0.96862 0.96083 1.19737 0.95754 0.92656 0.96111 1.20890 1.02437 1.00620 0.93049 0.93062 0.93698 0.91061 0.90373 0.90856 0.84900 0.86806 0.77182 0.92155 0.91629 0.93114 0.98154 0.97305 0.92803 0.86568 0.90134 0.91748 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.70 71.98 0.70 -1.84 16 2 C -0.07 -1.30 5.37 29.85 0.16 -1.14 16 3 C -0.16 -4.17 5.14 -19.84 -0.10 -4.27 16 4 C -0.07 -1.98 9.67 22.25 0.22 -1.77 16 5 C -0.22 -7.47 8.85 22.40 0.20 -7.27 16 6 C 0.21 7.58 6.64 38.22 0.25 7.83 16 7 N -0.73 -28.27 4.96 -318.95 -1.58 -29.85 16 8 C 0.16 6.56 2.21 44.99 0.10 6.66 16 9 H 0.06 2.47 6.48 -2.39 -0.02 2.45 16 10 C -0.15 -5.24 9.43 71.98 0.68 -4.56 16 11 C 0.02 1.17 4.52 29.85 0.13 1.30 16 12 C -0.53 -29.39 8.84 25.60 0.23 -29.17 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -55.69 13.29 21.44 0.28 -55.40 16 16 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.22 -7.09 9.55 22.40 0.21 -6.88 16 21 C -0.04 -1.14 5.88 -19.88 -0.12 -1.25 16 22 C -0.11 -2.26 9.21 71.24 0.66 -1.60 16 23 H 0.05 0.93 6.90 -2.39 -0.02 0.91 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.25 6.98 -2.39 -0.02 1.24 16 27 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 28 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.11 3.82 6.12 -2.91 -0.02 3.80 16 30 H 0.39 15.60 8.61 -92.71 -0.80 14.80 16 31 H 0.06 1.87 7.71 -2.38 -0.02 1.86 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.08 1.39 5.41 -2.39 -0.01 1.38 16 Total: -1.00 -62.13 323.08 4.72 -57.41 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.21 Total: 24.15 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 3.78 Total: -43.13 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.30 Total: -85.25 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -62.13 4.72 -57.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.693 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds