Wall clock time and date at job start Mon Mar 30 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.38312 * 119.92130 * 264.99990 * 3 2 1 5 5 C 1.38088 * 120.07285 * 180.02562 * 4 3 2 6 6 C 1.38933 * 119.92286 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07052 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99923 * 0.02562 * 7 6 5 9 9 H 1.08994 * 109.47395 * 324.99632 * 8 7 6 10 10 C 1.53008 * 109.47263 * 85.00149 * 8 7 6 11 11 C 1.52999 * 109.46965 * 204.99604 * 8 7 6 12 12 C 1.50704 * 109.47114 * 65.00357 * 11 8 7 13 13 H 1.08000 * 119.99457 * 359.97438 * 12 11 8 14 14 C 1.37873 * 120.00105 * 180.02562 * 12 11 8 15 15 N 1.31513 * 120.00202 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47096 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47557 * 119.99659 * 16 14 12 19 19 H 1.48503 * 109.47176 * 239.99732 * 16 14 12 20 20 C 1.38891 * 119.85300 * 359.97438 * 6 5 4 21 21 C 1.38118 * 119.92241 * 359.73134 * 20 6 5 22 22 C 1.50707 * 119.96430 * 180.29257 * 21 20 6 23 23 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 27 27 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 28 28 H 1.07997 * 119.96344 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.03535 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99869 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46498 * 299.99856 * 10 8 7 32 32 H 1.09003 * 109.47244 * 59.99671 * 10 8 7 33 33 H 1.08992 * 109.47202 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47453 * 185.00141 * 11 8 7 35 35 H 1.08997 * 109.47311 * 305.00265 * 11 8 7 36 36 H 0.97003 * 120.00005 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.03654 * 179.97438 * 20 6 5 38 38 H 1.08994 * 109.47074 * 270.25112 * 22 21 20 39 39 H 1.09002 * 109.46834 * 30.24664 * 22 21 20 40 40 H 1.09000 * 109.47328 * 150.24584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0364 -1.1942 5 6 2.8220 3.3380 -1.1978 6 6 2.9553 4.0293 -0.0001 7 7 3.4210 5.3462 -0.0002 8 6 3.7688 6.0000 -1.2641 9 1 4.2001 5.2670 -1.9457 10 6 2.5090 6.6005 -1.8914 11 6 4.7864 7.1116 -1.0001 12 6 6.0719 6.5068 -0.4972 13 1 6.1545 5.4367 -0.3774 14 6 7.1420 7.3197 -0.1890 15 7 7.0412 8.6229 -0.3343 16 14 8.7355 6.5699 0.4337 17 1 8.5924 5.0936 0.5074 18 1 9.8413 6.9146 -0.4956 19 1 9.0397 7.1053 1.7851 20 6 2.6235 3.4085 1.1972 21 6 2.1571 2.1084 1.1930 22 6 1.7906 1.4360 2.4910 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 2.2566 1.4985 -2.1249 29 1 3.0787 3.8180 -2.1306 30 1 3.5133 5.8281 0.8366 31 1 1.7840 5.8085 -2.0795 32 1 2.0777 7.3336 -1.2098 33 1 2.7679 7.0873 -2.8316 34 1 4.9784 7.6558 -1.9249 35 1 4.3898 7.7969 -0.2510 36 1 7.7942 9.1947 -0.1178 37 1 2.7264 3.9430 2.1300 38 1 2.6666 0.9318 2.8990 39 1 1.4386 2.1844 3.2011 40 1 1.0016 0.7057 2.3118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:57 Heat of formation + Delta-G solvation = -6.396680 kcal Electronic energy + Delta-G solvation = -17720.435839 eV Core-core repulsion = 15112.593022 eV Total energy + Delta-G solvation = -2607.842817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42441 -36.73673 -33.89114 -32.49572 -32.02090 -30.65256 -27.48875 -27.35196 -26.55815 -23.45147 -22.79904 -21.85453 -20.45429 -19.10109 -16.71784 -16.25323 -15.80226 -15.10057 -14.62973 -14.30385 -13.84607 -13.66274 -13.20221 -13.04721 -12.80387 -12.67157 -12.43467 -12.13149 -11.98966 -11.83690 -11.57870 -11.50350 -11.31801 -11.00326 -10.78880 -10.64955 -10.51415 -10.46467 -10.15085 -9.48958 -9.33248 -9.00354 -8.43559 -8.30166 -6.67602 -6.05875 -4.07866 1.85239 2.07150 3.28132 3.36336 3.41844 4.17698 4.26926 4.42726 5.04125 5.06792 5.28421 5.28980 5.31120 5.47786 5.56319 5.67889 5.75829 5.78647 5.83665 5.85258 5.92463 5.96895 6.01352 6.05898 6.18347 6.25857 6.35133 6.45810 6.49921 6.65654 6.80181 6.88230 6.91011 7.12884 7.34247 7.51820 7.57429 7.91902 8.12802 8.33963 8.49558 8.98969 9.57070 11.05144 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.005144 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.245849 B = 5441.706473 C = 5960.110835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.165 4.165 4 C -0.065 4.065 5 C -0.208 4.208 6 C 0.237 3.763 7 N -0.717 5.717 8 C 0.147 3.853 9 H 0.067 0.933 10 C -0.164 4.164 11 C 0.015 3.985 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.208 4.208 21 C -0.036 4.036 22 C -0.116 4.116 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.399 0.601 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 -12.976 1.218 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.168 4.168 4 C -0.084 4.084 5 C -0.231 4.231 6 C 0.129 3.871 7 N -0.341 5.341 8 C 0.042 3.958 9 H 0.085 0.915 10 C -0.223 4.223 11 C -0.022 4.022 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.232 4.232 21 C -0.037 4.037 22 C -0.172 4.172 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.234 0.766 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.617 -12.686 1.038 17.233 hybrid contribution 1.119 0.054 0.620 1.280 sum -10.499 -12.632 1.658 16.508 Atomic orbital electron populations 1.21787 0.95802 1.00755 1.02047 1.20322 0.95311 0.93520 1.01742 1.19254 1.08370 0.96426 0.92739 1.20649 0.96939 0.94042 0.96779 1.20644 1.09678 0.95851 0.96923 1.17938 0.90346 0.85313 0.93453 1.44991 1.69298 1.10269 1.09556 1.21187 0.93951 0.96006 0.84637 0.91512 1.22292 0.98810 1.00461 1.00708 1.19395 0.92557 0.92451 0.97799 1.21228 0.97145 0.93459 1.43484 0.92402 1.25003 0.98832 0.94792 0.95744 1.69967 1.31433 1.03101 1.49021 0.86558 0.83642 0.79508 0.78469 1.19735 1.21017 1.21069 1.20376 1.10353 0.96030 0.96394 1.19320 0.96833 0.93243 0.94305 1.20839 1.01357 1.00337 0.94687 0.92788 0.93221 0.92695 0.91821 0.92016 0.87075 0.86275 0.76632 0.93651 0.93021 0.92353 0.95171 0.96139 0.93035 0.86794 0.91570 0.92030 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.70 37.16 0.36 -1.07 16 2 C -0.07 -0.79 5.36 -27.88 -0.15 -0.94 16 3 C -0.17 -2.33 5.14 -104.59 -0.54 -2.86 16 4 C -0.07 -0.97 9.67 -39.61 -0.38 -1.36 16 5 C -0.21 -3.51 8.85 -39.38 -0.35 -3.86 16 6 C 0.24 4.22 6.64 -83.78 -0.56 3.66 16 7 N -0.72 -13.59 4.96 -52.17 -0.26 -13.85 16 8 C 0.15 2.93 2.21 -67.93 -0.15 2.78 16 9 H 0.07 1.37 6.48 -51.93 -0.34 1.04 16 10 C -0.16 -2.80 9.43 37.16 0.35 -2.45 16 11 C 0.02 0.37 4.52 -27.88 -0.13 0.25 16 12 C -0.51 -14.09 8.84 -34.44 -0.30 -14.39 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.21 -3.39 9.55 -39.38 -0.38 -3.77 16 21 C -0.04 -0.53 5.88 -104.65 -0.62 -1.14 16 22 C -0.12 -1.31 9.21 36.01 0.33 -0.98 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.54 6.87 -51.93 -0.36 0.18 16 26 H 0.06 0.66 7.00 -51.93 -0.36 0.29 16 27 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.99 6.12 -52.49 -0.32 1.67 16 30 H 0.40 7.58 8.62 -40.82 -0.35 7.23 16 31 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.07 0.66 5.39 -51.93 -0.28 0.38 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -29.00 323.04 -8.87 -37.87 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.59 Total: 4.67 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -2.60 Total: -24.61 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.48 Total: -39.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.00 -8.87 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.474 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds