Wall clock time and date at job start Mon Mar 30 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.38312 * 119.92130 * 264.99990 * 3 2 1 5 5 C 1.38088 * 120.07285 * 180.02562 * 4 3 2 6 6 C 1.38933 * 119.92286 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07052 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99923 * 0.02562 * 7 6 5 9 9 H 1.08994 * 109.47395 * 324.99632 * 8 7 6 10 10 C 1.53008 * 109.47263 * 85.00149 * 8 7 6 11 11 C 1.52999 * 109.46965 * 204.99604 * 8 7 6 12 12 C 1.50704 * 109.47114 * 65.00357 * 11 8 7 13 13 H 1.08000 * 119.99457 * 359.97438 * 12 11 8 14 14 C 1.37873 * 120.00105 * 180.02562 * 12 11 8 15 15 N 1.31513 * 120.00202 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47096 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47557 * 119.99659 * 16 14 12 19 19 H 1.48503 * 109.47176 * 239.99732 * 16 14 12 20 20 C 1.38891 * 119.85300 * 359.97438 * 6 5 4 21 21 C 1.38118 * 119.92241 * 359.73134 * 20 6 5 22 22 C 1.50707 * 119.96430 * 180.29257 * 21 20 6 23 23 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 27 27 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 28 28 H 1.07997 * 119.96344 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.03535 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99869 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46498 * 299.99856 * 10 8 7 32 32 H 1.09003 * 109.47244 * 59.99671 * 10 8 7 33 33 H 1.08992 * 109.47202 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47453 * 185.00141 * 11 8 7 35 35 H 1.08997 * 109.47311 * 305.00265 * 11 8 7 36 36 H 0.97003 * 120.00005 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.03654 * 179.97438 * 20 6 5 38 38 H 1.08994 * 109.47074 * 270.25112 * 22 21 20 39 39 H 1.09002 * 109.46834 * 30.24664 * 22 21 20 40 40 H 1.09000 * 109.47328 * 150.24584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0364 -1.1942 5 6 2.8220 3.3380 -1.1978 6 6 2.9553 4.0293 -0.0001 7 7 3.4210 5.3462 -0.0002 8 6 3.7688 6.0000 -1.2641 9 1 4.2001 5.2670 -1.9457 10 6 2.5090 6.6005 -1.8914 11 6 4.7864 7.1116 -1.0001 12 6 6.0719 6.5068 -0.4972 13 1 6.1545 5.4367 -0.3774 14 6 7.1420 7.3197 -0.1890 15 7 7.0412 8.6229 -0.3343 16 14 8.7355 6.5699 0.4337 17 1 8.5924 5.0936 0.5074 18 1 9.8413 6.9146 -0.4956 19 1 9.0397 7.1053 1.7851 20 6 2.6235 3.4085 1.1972 21 6 2.1571 2.1084 1.1930 22 6 1.7906 1.4360 2.4910 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 2.2566 1.4985 -2.1249 29 1 3.0787 3.8180 -2.1306 30 1 3.5133 5.8281 0.8366 31 1 1.7840 5.8085 -2.0795 32 1 2.0777 7.3336 -1.2098 33 1 2.7679 7.0873 -2.8316 34 1 4.9784 7.6558 -1.9249 35 1 4.3898 7.7969 -0.2510 36 1 7.7942 9.1947 -0.1178 37 1 2.7264 3.9430 2.1300 38 1 2.6666 0.9318 2.8990 39 1 1.4386 2.1844 3.2011 40 1 1.0016 0.7057 2.3118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:57 Heat of formation + Delta-G solvation = -20.847229 kcal Electronic energy + Delta-G solvation = -17721.062462 eV Core-core repulsion = 15112.593022 eV Total energy + Delta-G solvation = -2608.469440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63851 -38.16658 -35.40225 -34.20793 -33.14050 -32.00691 -29.35919 -28.54671 -27.63860 -25.22440 -23.99663 -23.08282 -21.82695 -20.44701 -18.55031 -17.92729 -17.10847 -16.48748 -16.20281 -15.66605 -15.05645 -14.78498 -14.64433 -14.38499 -14.02024 -13.85661 -13.70138 -13.47029 -13.32987 -13.25602 -12.96083 -12.84439 -12.72519 -12.62660 -12.40994 -12.15381 -11.89534 -11.54339 -11.40737 -11.30214 -11.23252 -10.61319 -10.48463 -9.49195 -8.22605 -8.01497 -6.30711 0.64206 0.85938 1.35134 1.37084 1.49223 2.38088 2.73691 3.05448 3.12936 4.00768 4.08313 4.19012 4.26713 4.37796 4.48723 4.51539 4.52930 4.67289 4.70354 4.77988 4.85256 4.90026 4.92416 5.04246 5.09097 5.14721 5.19222 5.21891 5.26394 5.36617 5.43324 5.49996 5.56891 5.65389 5.73420 5.78827 5.97941 6.19781 6.24094 6.69698 6.83485 7.03483 7.38140 8.89188 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.005144 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.245849 B = 5441.706473 C = 5960.110835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.162 4.162 4 C -0.071 4.071 5 C -0.224 4.224 6 C 0.212 3.788 7 N -0.727 5.727 8 C 0.160 3.840 9 H 0.059 0.941 10 C -0.153 4.153 11 C 0.023 3.977 12 C -0.524 4.524 13 H 0.051 0.949 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.221 4.221 21 C -0.042 4.042 22 C -0.114 4.114 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.394 0.606 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.009 0.991 35 H 0.000 1.000 36 H 0.263 0.737 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 -15.446 1.707 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.164 4.164 4 C -0.089 4.089 5 C -0.247 4.247 6 C 0.107 3.893 7 N -0.353 5.353 8 C 0.055 3.945 9 H 0.077 0.923 10 C -0.212 4.212 11 C -0.015 4.015 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.244 4.244 21 C -0.043 4.043 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.228 0.772 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.072 0.928 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.308 -15.189 1.525 19.609 hybrid contribution 1.278 0.733 0.475 1.548 sum -11.030 -14.456 2.000 18.293 Atomic orbital electron populations 1.21758 0.94624 1.02017 1.01711 1.20398 0.96216 0.91397 1.02840 1.19704 1.06640 0.97890 0.92172 1.20956 0.96289 0.93400 0.98278 1.20761 1.10593 0.96891 0.96443 1.18155 0.91764 0.84879 0.94540 1.44834 1.70697 1.11066 1.08673 1.20856 0.94043 0.94321 0.85286 0.92342 1.22167 0.97619 1.00709 1.00675 1.19244 0.93057 0.93323 0.95860 1.21491 0.98384 0.93149 1.43180 0.93112 1.25808 1.02207 0.95189 0.96036 1.70073 1.32545 1.04329 1.50112 0.85534 0.79641 0.78594 0.78075 1.19532 1.20336 1.20420 1.20584 1.10711 0.97019 0.96038 1.19734 0.95808 0.92636 0.96093 1.20891 1.02280 1.00731 0.93097 0.93386 0.91195 0.92824 0.90651 0.91075 0.84915 0.86805 0.77168 0.92178 0.93111 0.91625 0.97292 0.98141 0.92817 0.86521 0.90679 0.91422 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.70 71.98 0.70 -1.62 16 2 C -0.07 -1.33 5.36 29.85 0.16 -1.17 16 3 C -0.16 -4.18 5.14 -19.84 -0.10 -4.28 16 4 C -0.07 -1.99 9.67 22.25 0.22 -1.78 16 5 C -0.22 -7.49 8.85 22.40 0.20 -7.29 16 6 C 0.21 7.58 6.64 38.21 0.25 7.84 16 7 N -0.73 -28.27 4.96 -318.96 -1.58 -29.85 16 8 C 0.16 6.56 2.21 44.99 0.10 6.66 16 9 H 0.06 2.47 6.48 -2.39 -0.02 2.45 16 10 C -0.15 -5.24 9.43 71.98 0.68 -4.56 16 11 C 0.02 1.15 4.52 29.85 0.13 1.28 16 12 C -0.52 -29.32 8.84 25.60 0.23 -29.10 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.01 0.31 5.46 84.65 0.46 0.77 16 15 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.22 -7.08 9.55 22.40 0.21 -6.87 16 21 C -0.04 -1.14 5.88 -19.88 -0.12 -1.26 16 22 C -0.11 -2.26 9.21 71.24 0.66 -1.61 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.88 6.87 -2.39 -0.02 0.86 16 26 H 0.07 1.27 7.00 -2.39 -0.02 1.25 16 27 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 28 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.11 3.82 6.12 -2.91 -0.02 3.81 16 30 H 0.39 15.58 8.62 -92.71 -0.80 14.78 16 31 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 40 H 0.08 1.38 5.39 -2.39 -0.01 1.37 16 Total: -1.00 -62.24 323.04 4.72 -57.52 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.21 Total: 23.83 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 3.78 Total: -42.98 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.30 Total: -85.22 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.24 4.72 -57.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.674 kcal (2) G-P(sol) polarization free energy of solvation -62.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds