Wall clock time and date at job start Mon Mar 30 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47523 * 2 1 4 4 C 1.50702 * 109.47379 * 120.00228 * 2 1 3 5 5 C 1.38284 * 119.92910 * 119.99399 * 4 2 1 6 6 C 1.38102 * 120.07730 * 179.97438 * 5 4 2 7 7 C 1.38905 * 119.92398 * 0.28542 * 6 5 4 8 8 N 1.39669 * 120.07711 * 179.72013 * 7 6 5 9 9 C 1.46502 * 120.00681 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.46536 * 35.00383 * 9 8 7 11 11 C 1.52998 * 109.47443 * 275.00602 * 9 8 7 12 12 C 1.52992 * 109.47389 * 154.99974 * 9 8 7 13 13 C 1.50707 * 109.47284 * 295.00187 * 12 9 8 14 14 H 1.07994 * 119.99779 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99899 * 179.97438 * 13 12 9 16 16 N 1.31511 * 119.99846 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00093 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46979 * 89.99940 * 17 15 13 19 19 H 1.48496 * 109.46980 * 210.00035 * 17 15 13 20 20 H 1.48503 * 109.47326 * 329.99898 * 17 15 13 21 21 C 1.38914 * 119.85122 * 359.43987 * 7 6 5 22 22 C 1.38104 * 119.92260 * 0.58076 * 21 7 6 23 23 H 1.08999 * 109.46898 * 300.00026 * 1 2 3 24 24 H 1.08999 * 109.46966 * 59.99381 * 1 2 3 25 25 H 1.08993 * 109.47468 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46898 * 239.99974 * 2 1 3 27 27 H 1.08999 * 109.47229 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47047 * 300.00563 * 3 2 1 29 29 H 1.08999 * 109.47055 * 60.00070 * 3 2 1 30 30 H 1.08000 * 119.96014 * 359.97438 * 5 4 2 31 31 H 1.08002 * 120.03497 * 180.02562 * 6 5 4 32 32 H 0.97008 * 120.00083 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.46529 * 299.99857 * 11 9 8 34 34 H 1.09002 * 109.47293 * 59.99326 * 11 9 8 35 35 H 1.08995 * 109.47245 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.47179 * 55.00211 * 12 9 8 37 37 H 1.09005 * 109.47234 * 175.00355 * 12 9 8 38 38 H 0.96998 * 120.00163 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.04003 * 180.25530 * 21 7 6 40 40 H 1.08007 * 119.96360 * 179.70074 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8272 -1.8347 1.1018 6 6 3.2897 -2.4878 2.2273 7 6 2.9508 -2.0177 3.4896 8 7 3.4120 -2.6792 4.6300 9 6 3.0540 -2.1817 5.9607 10 1 2.0438 -1.7728 5.9360 11 6 4.0375 -1.0862 6.3773 12 6 3.1143 -3.3313 6.9683 13 6 2.0604 -4.3535 6.6279 14 1 1.4127 -4.1987 5.7777 15 6 1.9238 -5.4867 7.4014 16 7 1.0045 -6.3788 7.1042 17 14 3.0446 -5.7547 8.8716 18 1 2.4260 -5.1555 10.0813 19 1 3.2407 -7.2110 9.0855 20 1 4.3582 -5.1106 8.6166 21 6 2.1569 -0.8847 3.6153 22 6 1.6974 -0.2367 2.4857 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.0866 -2.2024 0.1200 31 1 3.9108 -3.3656 2.1260 32 1 3.9700 -3.4677 4.5410 33 1 5.0476 -1.4951 6.4019 34 1 3.9945 -0.2671 5.6594 35 1 3.7709 -0.7158 7.3671 36 1 4.0988 -3.7977 6.9290 37 1 2.9350 -2.9449 7.9716 38 1 0.9086 -7.1762 7.6481 39 1 1.8949 -0.5142 4.5953 40 1 1.0761 0.6415 2.5827 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:03 Heat of formation + Delta-G solvation = -16.947137 kcal Electronic energy + Delta-G solvation = -17652.422553 eV Core-core repulsion = 15044.122234 eV Total energy + Delta-G solvation = -2608.300319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56322 -38.23717 -35.93201 -34.56238 -32.44595 -31.68148 -29.72572 -28.46308 -27.87380 -24.85479 -24.02035 -23.26932 -21.15025 -20.74432 -18.91158 -18.34899 -16.91315 -16.39157 -16.27822 -15.44728 -15.27286 -14.85415 -14.56029 -14.43271 -14.24144 -14.09480 -13.69160 -13.67786 -13.53877 -13.29506 -13.02168 -12.83840 -12.48435 -12.42671 -11.97863 -11.92907 -11.73811 -11.51070 -11.47653 -11.39040 -11.26970 -10.77755 -10.56337 -9.70652 -8.27753 -8.03268 -6.31570 0.65880 0.85681 1.35944 1.37512 1.48631 2.35692 2.73017 3.09083 3.09453 3.94815 4.01365 4.12267 4.25419 4.30690 4.44408 4.46561 4.53095 4.64111 4.71305 4.75390 4.89495 4.89942 5.02295 5.02560 5.07764 5.09194 5.11725 5.20751 5.27371 5.31478 5.42605 5.45718 5.49643 5.61970 5.65372 5.70160 5.96205 6.17500 6.29408 6.67743 6.76845 7.02568 7.32381 8.89295 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.004684 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.546886 B = 5976.853198 C = 6309.566622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.153 4.153 5 C -0.073 4.073 6 C -0.218 4.218 7 C 0.208 3.792 8 N -0.729 5.729 9 C 0.162 3.838 10 H 0.055 0.945 11 C -0.155 4.155 12 C -0.018 4.018 13 C -0.517 4.517 14 H 0.027 0.973 15 C 0.003 3.997 16 N -0.954 5.954 17 Si 0.951 3.049 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.218 4.218 22 C -0.068 4.068 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.115 0.885 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 14.719 -10.992 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.155 4.155 5 C -0.092 4.092 6 C -0.241 4.241 7 C 0.102 3.898 8 N -0.355 5.355 9 C 0.057 3.943 10 H 0.073 0.927 11 C -0.213 4.213 12 C -0.055 4.055 13 C -0.555 4.555 14 H 0.045 0.955 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.167 1.167 21 C -0.241 4.241 22 C -0.087 4.087 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.229 0.771 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.970 14.648 -10.727 18.824 hybrid contribution 0.175 -1.238 0.837 1.505 sum 5.145 13.410 -9.890 17.439 Atomic orbital electron populations 1.21856 0.94591 1.01397 1.02166 1.19987 0.95683 0.96124 0.94501 1.21827 1.00831 0.94838 1.02150 1.19782 1.02544 0.98165 0.95002 1.20974 0.95894 0.94456 0.97870 1.20729 1.08250 1.03803 0.91286 1.18175 0.92508 0.91747 0.87322 1.44817 1.56148 1.31643 1.02856 1.20764 0.97314 0.94091 0.82169 0.92737 1.22196 0.99438 0.98035 1.01662 1.19824 0.96201 0.93825 0.95680 1.21315 1.17049 1.04602 1.12554 0.95456 1.26019 0.96851 0.95526 1.00971 1.70087 1.36094 1.11634 1.41658 0.85647 0.80446 0.77192 0.79214 1.19242 1.21528 1.16712 1.20789 1.05077 0.98694 0.99497 1.20843 0.97619 0.98809 0.91397 0.92907 0.91088 0.93779 0.90260 0.93083 0.91264 0.92818 0.84688 0.86347 0.77067 0.92376 0.92342 0.90886 0.95520 0.94641 0.92702 0.86674 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.01 71.98 0.65 -2.05 16 2 C -0.04 -0.88 3.09 -11.54 -0.04 -0.92 16 3 C -0.14 -2.35 9.01 71.98 0.65 -1.70 16 4 C -0.15 -4.01 4.79 -19.84 -0.09 -4.10 16 5 C -0.07 -2.04 9.66 22.25 0.21 -1.83 16 6 C -0.22 -7.05 9.90 22.40 0.22 -6.82 16 7 C 0.21 7.43 6.64 38.21 0.25 7.69 16 8 N -0.73 -27.59 4.96 -318.97 -1.58 -29.18 16 9 C 0.16 6.18 2.21 44.99 0.10 6.28 16 10 H 0.05 2.24 6.50 -2.38 -0.02 2.23 16 11 C -0.15 -4.63 9.42 71.98 0.68 -3.95 16 12 C -0.02 -0.79 3.58 29.85 0.11 -0.68 16 13 C -0.52 -29.27 9.39 25.60 0.24 -29.03 16 14 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 15 C 0.00 0.15 5.47 84.66 0.46 0.61 16 16 N -0.95 -60.17 13.96 21.45 0.30 -59.88 16 17 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 21 C -0.22 -7.27 8.84 22.40 0.20 -7.08 16 22 C -0.07 -1.93 8.70 22.25 0.19 -1.74 16 23 H 0.05 1.01 7.38 -2.39 -0.02 1.00 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.92 7.38 -2.39 -0.02 0.90 16 30 H 0.14 3.03 7.94 -2.91 -0.02 3.01 16 31 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.40 15.03 8.62 -92.70 -0.80 14.23 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.64 7.68 -2.39 -0.02 1.62 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 37 H 0.04 1.52 7.57 -2.38 -0.02 1.50 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.12 3.83 6.10 -2.91 -0.02 3.81 16 40 H 0.13 3.11 7.09 -2.91 -0.02 3.09 16 Total: -1.00 -65.21 321.36 4.58 -60.63 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.15 Total: 28.26 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 3.84 Total: -45.31 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -1.28 Total: -89.05 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -65.21 4.58 -60.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.683 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds