Wall clock time and date at job start Mon Mar 30 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47381 * 2 1 4 4 C 1.53004 * 109.47033 * 239.99910 * 2 1 3 5 5 C 1.50703 * 109.46874 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99762 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99974 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00124 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99972 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46940 * 90.00507 * 9 7 5 11 11 H 1.48499 * 109.46884 * 210.00157 * 9 7 5 12 12 H 1.48494 * 109.46950 * 330.00155 * 9 7 5 13 13 N 1.46902 * 109.47070 * 120.00178 * 2 1 3 14 14 C 1.46905 * 110.99748 * 257.59445 * 13 2 1 15 15 H 1.09002 * 109.47115 * 317.83401 * 14 13 2 16 16 C 1.53001 * 109.47147 * 77.83202 * 14 13 2 17 17 C 1.52991 * 109.47112 * 197.83320 * 14 13 2 18 18 C 1.50699 * 109.47189 * 65.00250 * 17 14 13 19 19 C 1.38234 * 120.00414 * 89.99648 * 18 17 14 20 20 C 1.38231 * 120.00153 * 180.02562 * 19 18 17 21 21 C 1.38233 * 120.00215 * 359.95617 * 20 19 18 22 22 C 1.38232 * 120.00095 * 0.27911 * 21 20 19 23 23 C 1.38236 * 119.99727 * 359.50948 * 22 21 20 24 24 H 1.08991 * 109.47348 * 305.63045 * 1 2 3 25 25 H 1.08996 * 109.46869 * 65.63624 * 1 2 3 26 26 H 1.09000 * 109.47059 * 185.62916 * 1 2 3 27 27 H 1.08999 * 109.47043 * 294.99330 * 4 2 1 28 28 H 1.08992 * 109.46961 * 55.00229 * 4 2 1 29 29 H 0.96998 * 120.00406 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00259 * 133.64292 * 13 2 1 31 31 H 1.09007 * 109.46939 * 53.62053 * 16 14 13 32 32 H 1.09001 * 109.47375 * 173.61883 * 16 14 13 33 33 H 1.09001 * 109.47631 * 293.62405 * 16 14 13 34 34 H 1.09005 * 109.47518 * 305.00133 * 17 14 13 35 35 H 1.08999 * 109.47451 * 184.99969 * 17 14 13 36 36 H 1.07997 * 119.99823 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.99889 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00269 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.00255 * 179.72680 * 22 21 20 40 40 H 1.08000 * 120.00481 * 180.25896 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 5.5411 -1.1003 -2.4134 9 14 3.3015 -2.1078 -3.6959 10 1 2.9399 -1.1627 -4.7826 11 1 4.1603 -3.1878 -4.2446 12 1 2.0660 -2.7004 -3.1236 13 7 2.0197 -0.6925 1.1994 14 6 2.4729 0.2684 2.2140 15 1 3.0385 1.0659 1.7320 16 6 1.2593 0.8647 2.9299 17 6 3.3647 -0.4464 3.2311 18 6 4.6194 -0.9272 2.5487 19 6 5.7328 -0.1098 2.4935 20 6 6.8835 -0.5507 1.8671 21 6 6.9211 -1.8094 1.2968 22 6 5.8062 -2.6249 1.3477 23 6 4.6569 -2.1857 1.9779 24 1 -0.3633 0.5986 0.8352 25 1 -0.3633 0.4239 -0.9361 26 1 -0.3633 -1.0227 0.1008 27 1 1.7517 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 6.0255 -1.5070 -3.1487 30 1 2.7531 -1.3450 0.9662 31 1 0.6331 0.0599 3.3151 32 1 1.5962 1.4903 3.7564 33 1 0.6839 1.4686 2.2282 34 1 2.8287 -1.2988 3.6486 35 1 3.6286 0.2444 4.0318 36 1 5.7034 0.8735 2.9389 37 1 7.7533 0.0881 1.8236 38 1 7.8203 -2.1540 0.8078 39 1 5.8341 -3.6065 0.8983 40 1 3.7871 -2.8245 2.0214 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:52 Heat of formation + Delta-G solvation = -11.448810 kcal Electronic energy + Delta-G solvation = -18712.375922 eV Core-core repulsion = 16104.314028 eV Total energy + Delta-G solvation = -2608.061894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34849 -38.51988 -35.60641 -34.14426 -32.01858 -31.67535 -29.69771 -29.46738 -27.15428 -24.54212 -23.40247 -22.54066 -21.10078 -21.06856 -18.85968 -17.60927 -16.81480 -16.53346 -16.09647 -16.04797 -15.60855 -15.04691 -14.61177 -14.18300 -14.16106 -13.82021 -13.70745 -13.46464 -13.11801 -13.05252 -12.85994 -12.70544 -12.61905 -12.35286 -12.03814 -11.89366 -11.73683 -11.64630 -11.44546 -11.20015 -11.07861 -10.68455 -9.66130 -9.41358 -9.13930 -8.18217 -6.19679 0.61966 0.65837 1.33873 1.36898 1.47034 2.39031 3.01205 3.14161 3.52025 3.93295 4.06553 4.17256 4.24268 4.30030 4.34356 4.49642 4.59642 4.64733 4.68373 4.73683 4.78389 4.91429 4.98157 5.02284 5.07254 5.11442 5.19065 5.27250 5.29194 5.34790 5.40884 5.53064 5.55715 5.68799 5.74899 5.77196 5.82347 6.28505 6.35045 6.47845 6.72748 6.84684 7.42430 8.95851 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.011451 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.034502 B = 2444.594016 C = 3931.847792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 H 0.023 0.977 4 C -0.022 4.022 5 C -0.511 4.511 6 H 0.034 0.966 7 C 0.021 3.979 8 N -0.930 5.930 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.253 1.253 13 N -0.679 5.679 14 C 0.087 3.913 15 H 0.011 0.989 16 C -0.131 4.131 17 C -0.070 4.070 18 C -0.092 4.092 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.346 0.654 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 0.542 11.088 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.041 0.959 4 C -0.059 4.059 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.177 4.177 8 N -0.570 5.570 9 Si 0.757 3.243 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.177 1.177 13 N -0.314 5.314 14 C -0.023 4.023 15 H 0.029 0.971 16 C -0.188 4.188 17 C -0.108 4.108 18 C -0.092 4.092 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.068 0.421 11.266 12.360 hybrid contribution 1.196 -0.115 -1.741 2.116 sum -3.872 0.305 9.525 10.286 Atomic orbital electron populations 1.21815 0.93930 1.01869 1.01042 1.21369 0.95375 0.94948 0.89555 0.95859 1.19894 0.94902 0.96201 0.94952 1.21136 0.91338 1.34000 1.08489 0.94798 1.25689 0.95340 0.96764 0.99889 1.70067 1.07819 1.46378 1.32702 0.85944 0.79535 0.78864 0.79935 1.20052 1.21447 1.17681 1.60961 1.41638 1.18090 1.10688 1.21573 0.95160 0.92904 0.92682 0.97132 1.21805 0.96766 1.00568 0.99685 1.20755 0.91647 1.01363 0.97005 1.20064 0.95966 0.94105 0.99078 1.21181 0.93186 0.99716 1.00786 1.21266 0.98945 0.96062 0.98372 1.21170 0.98934 0.95176 0.99139 1.21178 0.93877 1.00273 0.98343 1.21078 0.97558 0.96525 0.98416 0.91728 0.92923 0.92628 0.96390 0.96673 0.93159 0.83304 0.91439 0.90953 0.93225 0.89531 0.88651 0.85036 0.85253 0.86370 0.86510 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.35 71.98 0.67 -3.47 16 2 C 0.10 3.91 2.36 44.92 0.11 4.02 16 3 H 0.02 1.01 7.30 -2.39 -0.02 0.99 16 4 C -0.02 -1.03 3.49 29.85 0.10 -0.92 16 5 C -0.51 -28.62 8.72 25.60 0.22 -28.40 16 6 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 7 C 0.02 1.23 5.47 84.65 0.46 1.69 16 8 N -0.93 -56.37 13.96 21.44 0.30 -56.07 16 9 Si 0.93 44.55 27.47 68.60 1.88 46.44 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 13 N -0.68 -25.44 6.15 -469.46 -2.89 -28.33 16 14 C 0.09 2.80 2.54 44.91 0.11 2.92 16 15 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 16 C -0.13 -3.27 8.85 71.98 0.64 -2.63 16 17 C -0.07 -1.99 5.01 29.84 0.15 -1.84 16 18 C -0.09 -3.18 4.80 -19.86 -0.10 -3.28 16 19 C -0.13 -4.53 9.70 22.27 0.22 -4.32 16 20 C -0.13 -4.66 10.05 22.27 0.22 -4.43 16 21 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 22 C -0.12 -4.62 10.05 22.27 0.22 -4.40 16 23 C -0.12 -4.36 8.00 22.27 0.18 -4.18 16 24 H 0.06 1.81 6.28 -2.39 -0.02 1.79 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 28 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.35 14.56 4.39 -89.70 -0.39 14.17 16 31 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.28 6.46 -2.39 -0.02 1.26 16 34 H 0.09 2.27 8.09 -2.38 -0.02 2.25 16 35 H 0.10 2.20 8.09 -2.39 -0.02 2.18 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.12 4.27 7.69 -2.91 -0.02 4.24 16 Total: -1.00 -63.30 318.50 3.28 -60.01 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.54 Total: 31.83 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 3.44 Total: -53.88 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.59 Total: -84.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -63.30 3.28 -60.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.566 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds