Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46724 * 2 1 4 4 C 1.52995 * 109.47564 * 240.00150 * 2 1 3 5 5 C 1.50700 * 109.47237 * 174.99503 * 4 2 1 6 6 C 1.38237 * 119.99977 * 269.72606 * 5 4 2 7 7 C 1.38237 * 119.99436 * 179.76566 * 6 5 4 8 8 C 1.38236 * 120.00338 * 0.50975 * 7 6 5 9 9 C 1.38229 * 119.99766 * 359.74724 * 8 7 6 10 10 C 1.38233 * 120.00288 * 359.97438 * 9 8 7 11 11 N 1.46900 * 109.47478 * 119.99555 * 2 1 3 12 12 C 1.46896 * 111.00297 * 286.45092 * 11 2 1 13 13 H 1.09005 * 109.47138 * 339.45828 * 12 11 2 14 14 C 1.53006 * 109.47083 * 99.45454 * 12 11 2 15 15 C 1.52994 * 109.47161 * 219.45537 * 12 11 2 16 16 C 1.50695 * 109.47104 * 65.00130 * 15 12 11 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 12 18 18 C 1.37882 * 120.00262 * 179.97438 * 16 15 12 19 19 N 1.31522 * 119.99711 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00346 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47067 * 89.99896 * 20 18 16 22 22 H 1.48500 * 109.47169 * 210.00054 * 20 18 16 23 23 H 1.48503 * 109.47193 * 329.99873 * 20 18 16 24 24 H 1.09002 * 109.46620 * 186.29756 * 1 2 3 25 25 H 1.08996 * 109.47735 * 306.29562 * 1 2 3 26 26 H 1.08996 * 109.47219 * 66.30284 * 1 2 3 27 27 H 1.08997 * 109.46932 * 295.00078 * 4 2 1 28 28 H 1.09004 * 109.47385 * 54.99543 * 4 2 1 29 29 H 1.07991 * 120.00188 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.99941 * 180.23000 * 7 6 5 31 31 H 1.07995 * 119.99698 * 179.72238 * 8 7 6 32 32 H 1.07999 * 120.00130 * 179.97438 * 9 8 7 33 33 H 1.08002 * 120.00504 * 179.97438 * 10 9 8 34 34 H 1.00897 * 110.99971 * 162.49130 * 11 2 1 35 35 H 1.08997 * 109.47034 * 55.17997 * 14 12 11 36 36 H 1.08998 * 109.46660 * 175.18069 * 14 12 11 37 37 H 1.09001 * 109.47378 * 295.17894 * 14 12 11 38 38 H 1.09002 * 109.47197 * 184.99858 * 15 12 11 39 39 H 1.09002 * 109.47286 * 304.99834 * 15 12 11 40 40 H 0.96998 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6147 -1.3126 6 6 4.1324 0.4466 -1.9731 7 6 5.5100 0.5467 -2.0271 8 6 6.2973 -0.4199 -1.4298 9 6 5.7069 -1.4839 -0.7740 10 6 4.3293 -1.5811 -0.7150 11 7 2.0197 -0.6924 1.1995 12 6 1.8291 0.1338 2.3990 13 1 1.7164 1.1779 2.1069 14 6 0.5727 -0.3266 3.1410 15 6 3.0450 -0.0108 3.3163 16 6 4.2615 0.5561 2.6311 17 1 4.1761 0.9770 1.6401 18 6 5.4837 0.5374 3.2691 19 7 5.5876 0.0253 4.4760 20 14 6.9918 1.2394 2.4194 21 1 7.1202 2.6813 2.7504 22 1 8.2028 0.5154 2.8824 23 1 6.8512 1.0796 0.9497 24 1 -0.3632 -1.0215 0.1127 25 1 -0.3634 0.6083 0.8282 26 1 -0.3633 0.4130 -0.9410 27 1 1.7517 -1.7714 -1.2056 28 1 1.6055 -0.2617 -2.1370 29 1 3.5173 1.1991 -2.4439 30 1 5.9713 1.3778 -2.5398 31 1 7.3736 -0.3439 -1.4759 32 1 6.3219 -2.2393 -0.3077 33 1 3.8679 -2.4126 -0.2030 34 1 2.9872 -0.9585 1.0936 35 1 0.6488 -1.3921 3.3578 36 1 0.4783 0.2283 4.0744 37 1 -0.3038 -0.1439 2.5195 38 1 2.8658 0.5308 4.2452 39 1 3.2105 -1.0654 3.5368 40 1 6.4475 0.0118 4.9247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = 0.126542 kcal Electronic energy + Delta-G solvation = -18666.550450 eV Core-core repulsion = 16058.990502 eV Total energy + Delta-G solvation = -2607.559949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14309 -37.06140 -33.96486 -32.24246 -30.60230 -30.50682 -28.12058 -27.24612 -25.98811 -22.96443 -22.21366 -21.32756 -19.81375 -19.36341 -16.47409 -16.24510 -15.41225 -15.01393 -14.86052 -14.30689 -14.20125 -13.77727 -13.01759 -12.91746 -12.64378 -12.15821 -12.00642 -11.80760 -11.70324 -11.63333 -11.37920 -11.23772 -10.91060 -10.76831 -10.61103 -10.44619 -10.38584 -10.21408 -10.05522 -9.14945 -9.02690 -8.48823 -8.36157 -8.22560 -7.55220 -5.98124 -4.00292 1.77176 1.82601 3.32056 3.38899 3.45582 4.18988 4.48869 4.91700 5.08624 5.23656 5.37155 5.39380 5.42215 5.48765 5.70639 5.77199 5.84385 5.91108 6.02734 6.06257 6.11167 6.14464 6.29635 6.34303 6.42817 6.48037 6.50691 6.61434 6.69222 6.85188 6.93228 6.98772 7.02255 7.05975 7.42307 7.58841 7.68968 8.00942 8.15243 8.39364 8.44450 9.05993 9.64388 11.12648 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.012160 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.063528 B = 2301.986357 C = 3858.290083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.036 0.964 4 C -0.077 4.077 5 C -0.082 4.082 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.108 4.108 10 C -0.103 4.103 11 N -0.682 5.682 12 C 0.087 3.913 13 H 0.034 0.966 14 C -0.136 4.136 15 C 0.015 3.985 16 C -0.515 4.515 17 H 0.051 0.949 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.876 3.124 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.357 0.643 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -1.440 -12.004 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.054 0.946 4 C -0.115 4.115 5 C -0.082 4.082 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.140 4.140 9 C -0.126 4.126 10 C -0.121 4.121 11 N -0.318 5.318 12 C -0.023 4.023 13 H 0.052 0.948 14 C -0.195 4.195 15 C -0.023 4.023 16 C -0.554 4.554 17 H 0.069 0.931 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.704 3.296 21 H -0.211 1.211 22 H -0.214 1.214 23 H -0.185 1.185 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.180 0.820 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.254 -1.838 -11.776 13.025 hybrid contribution 1.782 1.237 -0.303 2.191 sum -3.471 -0.600 -12.080 12.583 Atomic orbital electron populations 1.21899 0.95336 1.02062 1.00477 1.21449 0.94767 0.95699 0.90306 0.94633 1.20747 0.90916 1.02010 0.97832 1.19855 0.95623 0.95026 0.97673 1.20916 0.94672 0.97808 1.00425 1.20999 0.93927 0.98649 1.00422 1.21035 0.99393 0.95019 0.98540 1.21089 0.95088 0.98258 0.98213 1.21031 0.93569 0.99064 0.98400 1.60764 1.27628 1.42318 1.01089 1.21614 0.96219 0.93528 0.90926 0.94822 1.21914 0.97482 1.01201 0.98854 1.19399 0.90745 0.97666 0.94475 1.21142 0.93150 1.39172 1.01886 0.93052 1.24929 0.98762 0.95318 0.94764 1.69970 1.24749 1.45564 1.12964 0.86807 0.82857 0.78974 0.80992 1.21075 1.21410 1.18533 0.92158 0.92598 0.93480 0.90447 0.91230 0.86767 0.86828 0.86903 0.86341 0.85787 0.81984 0.92916 0.93701 0.94013 0.96225 0.95945 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.56 37.16 0.32 -1.64 16 2 C 0.09 1.46 2.54 -67.72 -0.17 1.29 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 4 C -0.08 -1.12 5.02 -27.89 -0.14 -1.26 16 5 C -0.08 -1.33 4.78 -104.62 -0.50 -1.83 16 6 C -0.12 -1.90 9.70 -39.58 -0.38 -2.28 16 7 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 8 C -0.12 -2.02 9.90 -39.59 -0.39 -2.42 16 9 C -0.11 -1.85 10.05 -39.59 -0.40 -2.25 16 10 C -0.10 -1.74 8.00 -39.58 -0.32 -2.06 16 11 N -0.68 -13.25 6.15 -99.74 -0.61 -13.86 16 12 C 0.09 1.84 2.29 -67.71 -0.15 1.69 16 13 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 14 C -0.14 -2.51 9.28 37.16 0.34 -2.17 16 15 C 0.01 0.38 4.45 -27.89 -0.12 0.25 16 16 C -0.52 -14.30 8.13 -34.44 -0.28 -14.58 16 17 H 0.05 1.43 7.73 -52.48 -0.41 1.03 16 18 C 0.06 1.82 5.46 -17.81 -0.10 1.72 16 19 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 20 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.22 6.96 56.52 0.39 -5.83 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.81 6.22 -51.93 -0.32 0.49 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.12 2.01 7.79 -52.49 -0.41 1.60 16 34 H 0.36 7.58 4.52 -39.29 -0.18 7.40 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.68 5.87 -51.93 -0.30 0.37 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -29.80 321.13 -9.37 -39.17 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.61 Total: 7.14 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.69 Total: -27.87 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.12 Total: -39.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.80 -9.37 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.296 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds