Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46724 * 2 1 4 4 C 1.52995 * 109.47564 * 240.00150 * 2 1 3 5 5 C 1.50700 * 109.47237 * 174.99503 * 4 2 1 6 6 C 1.38237 * 119.99977 * 269.72606 * 5 4 2 7 7 C 1.38237 * 119.99436 * 179.76566 * 6 5 4 8 8 C 1.38236 * 120.00338 * 0.50975 * 7 6 5 9 9 C 1.38229 * 119.99766 * 359.74724 * 8 7 6 10 10 C 1.38233 * 120.00288 * 359.97438 * 9 8 7 11 11 N 1.46900 * 109.47478 * 119.99555 * 2 1 3 12 12 C 1.46896 * 111.00297 * 286.45092 * 11 2 1 13 13 H 1.09005 * 109.47138 * 339.45828 * 12 11 2 14 14 C 1.53006 * 109.47083 * 99.45454 * 12 11 2 15 15 C 1.52994 * 109.47161 * 219.45537 * 12 11 2 16 16 C 1.50695 * 109.47104 * 65.00130 * 15 12 11 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 12 18 18 C 1.37882 * 120.00262 * 179.97438 * 16 15 12 19 19 N 1.31522 * 119.99711 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00346 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47067 * 89.99896 * 20 18 16 22 22 H 1.48500 * 109.47169 * 210.00054 * 20 18 16 23 23 H 1.48503 * 109.47193 * 329.99873 * 20 18 16 24 24 H 1.09002 * 109.46620 * 186.29756 * 1 2 3 25 25 H 1.08996 * 109.47735 * 306.29562 * 1 2 3 26 26 H 1.08996 * 109.47219 * 66.30284 * 1 2 3 27 27 H 1.08997 * 109.46932 * 295.00078 * 4 2 1 28 28 H 1.09004 * 109.47385 * 54.99543 * 4 2 1 29 29 H 1.07991 * 120.00188 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.99941 * 180.23000 * 7 6 5 31 31 H 1.07995 * 119.99698 * 179.72238 * 8 7 6 32 32 H 1.07999 * 120.00130 * 179.97438 * 9 8 7 33 33 H 1.08002 * 120.00504 * 179.97438 * 10 9 8 34 34 H 1.00897 * 110.99971 * 162.49130 * 11 2 1 35 35 H 1.08997 * 109.47034 * 55.17997 * 14 12 11 36 36 H 1.08998 * 109.46660 * 175.18069 * 14 12 11 37 37 H 1.09001 * 109.47378 * 295.17894 * 14 12 11 38 38 H 1.09002 * 109.47197 * 184.99858 * 15 12 11 39 39 H 1.09002 * 109.47286 * 304.99834 * 15 12 11 40 40 H 0.96998 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6147 -1.3126 6 6 4.1324 0.4466 -1.9731 7 6 5.5100 0.5467 -2.0271 8 6 6.2973 -0.4199 -1.4298 9 6 5.7069 -1.4839 -0.7740 10 6 4.3293 -1.5811 -0.7150 11 7 2.0197 -0.6924 1.1995 12 6 1.8291 0.1338 2.3990 13 1 1.7164 1.1779 2.1069 14 6 0.5727 -0.3266 3.1410 15 6 3.0450 -0.0108 3.3163 16 6 4.2615 0.5561 2.6311 17 1 4.1761 0.9770 1.6401 18 6 5.4837 0.5374 3.2691 19 7 5.5876 0.0253 4.4760 20 14 6.9918 1.2394 2.4194 21 1 7.1202 2.6813 2.7504 22 1 8.2028 0.5154 2.8824 23 1 6.8512 1.0796 0.9497 24 1 -0.3632 -1.0215 0.1127 25 1 -0.3634 0.6083 0.8282 26 1 -0.3633 0.4130 -0.9410 27 1 1.7517 -1.7714 -1.2056 28 1 1.6055 -0.2617 -2.1370 29 1 3.5173 1.1991 -2.4439 30 1 5.9713 1.3778 -2.5398 31 1 7.3736 -0.3439 -1.4759 32 1 6.3219 -2.2393 -0.3077 33 1 3.8679 -2.4126 -0.2030 34 1 2.9872 -0.9585 1.0936 35 1 0.6488 -1.3921 3.3578 36 1 0.4783 0.2283 4.0744 37 1 -0.3038 -0.1439 2.5195 38 1 2.8658 0.5308 4.2452 39 1 3.2105 -1.0654 3.5368 40 1 6.4475 0.0118 4.9247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = -15.942883 kcal Electronic energy + Delta-G solvation = -18667.247273 eV Core-core repulsion = 16058.990502 eV Total energy + Delta-G solvation = -2608.256771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39540 -38.55358 -35.65407 -34.15391 -31.95956 -31.73376 -29.54468 -29.22849 -27.17959 -25.00711 -23.45137 -22.59782 -21.17191 -21.02006 -18.49386 -17.64942 -16.91998 -16.59960 -16.15028 -16.03382 -15.64463 -15.18740 -14.43148 -14.22444 -14.18346 -13.80040 -13.58624 -13.24505 -13.17135 -13.02549 -12.87562 -12.70219 -12.68170 -12.39555 -12.19346 -12.03868 -11.87544 -11.70348 -11.45738 -11.15206 -10.96243 -10.57738 -9.74281 -9.49183 -9.11959 -8.19056 -6.27936 0.52450 0.57703 1.34889 1.36520 1.49919 2.40139 2.93918 3.13604 3.51709 3.89961 4.03954 4.17933 4.20425 4.29445 4.34939 4.48702 4.57706 4.65672 4.69403 4.72101 4.74773 4.89217 4.99161 5.02396 5.07528 5.13549 5.23516 5.24344 5.31281 5.39078 5.51720 5.53935 5.57193 5.62765 5.68466 5.79388 5.84053 6.20593 6.22884 6.50906 6.75502 6.85965 7.40845 8.92157 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.012160 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.063528 B = 2301.986357 C = 3858.290083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.085 3.915 3 H 0.017 0.983 4 C -0.070 4.070 5 C -0.091 4.091 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.139 4.139 9 C -0.130 4.130 10 C -0.120 4.120 11 N -0.681 5.681 12 C 0.096 3.904 13 H 0.025 0.975 14 C -0.128 4.128 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.930 5.930 20 Si 0.939 3.061 21 H -0.283 1.283 22 H -0.286 1.286 23 H -0.247 1.247 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.345 0.655 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.068 0.932 38 H -0.008 1.008 39 H -0.005 1.005 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -0.680 -14.031 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.035 0.965 4 C -0.108 4.108 5 C -0.091 4.091 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.157 4.157 9 C -0.148 4.148 10 C -0.138 4.138 11 N -0.315 5.315 12 C -0.014 4.014 13 H 0.043 0.957 14 C -0.186 4.186 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.570 5.570 20 Si 0.764 3.236 21 H -0.209 1.209 22 H -0.211 1.211 23 H -0.170 1.170 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.014 0.986 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.993 -1.076 -13.819 15.101 hybrid contribution 1.994 0.998 0.330 2.254 sum -3.999 -0.078 -13.489 14.069 Atomic orbital electron populations 1.21850 0.93012 1.02463 1.01823 1.21589 0.96538 0.94509 0.89822 0.96544 1.20746 0.89784 1.02429 0.97795 1.20122 0.96652 0.94936 0.97437 1.21275 0.95127 0.98048 1.00151 1.21378 0.94221 0.99102 1.00138 1.21335 1.00472 0.95129 0.98721 1.21326 0.95474 0.99031 0.98951 1.21172 0.93910 0.99674 0.99035 1.60874 1.26808 1.42144 1.01724 1.21432 0.95278 0.93574 0.91139 0.95706 1.21828 0.96974 1.00813 0.99018 1.19280 0.92758 0.95222 0.94340 1.21340 0.93907 1.38637 1.01651 0.93264 1.25730 1.01849 0.95691 0.95339 1.70091 1.25537 1.46936 1.14467 0.85819 0.79115 0.78006 0.80686 1.20880 1.21143 1.16985 0.91723 0.93244 0.90654 0.89849 0.88334 0.84443 0.84421 0.85449 0.85893 0.86069 0.83358 0.93251 0.93654 0.91281 0.98984 0.98628 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.56 71.98 0.62 -2.71 16 2 C 0.09 2.65 2.54 44.91 0.11 2.76 16 3 H 0.02 0.58 7.69 -2.39 -0.02 0.56 16 4 C -0.07 -1.85 5.02 29.85 0.15 -1.70 16 5 C -0.09 -2.82 4.78 -19.87 -0.09 -2.92 16 6 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 7 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 8 C -0.14 -4.41 9.90 22.27 0.22 -4.19 16 9 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 10 C -0.12 -4.04 8.00 22.27 0.18 -3.86 16 11 N -0.68 -26.01 6.15 -469.48 -2.89 -28.90 16 12 C 0.10 4.06 2.29 44.92 0.10 4.16 16 13 H 0.02 1.09 7.40 -2.38 -0.02 1.08 16 14 C -0.13 -4.60 9.28 71.98 0.67 -3.93 16 15 C 0.02 1.14 4.45 29.84 0.13 1.28 16 16 C -0.52 -29.11 8.13 25.60 0.21 -28.90 16 17 H 0.05 2.75 7.73 -2.91 -0.02 2.73 16 18 C 0.01 0.69 5.46 84.65 0.46 1.15 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.94 44.61 29.54 68.60 2.03 46.64 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.25 -11.03 6.96 99.48 0.69 -10.34 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.29 6.22 -2.39 -0.01 1.27 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 28 H 0.10 2.03 8.08 -2.39 -0.02 2.01 16 29 H 0.14 3.28 8.06 -2.92 -0.02 3.25 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.12 4.00 7.79 -2.91 -0.02 3.98 16 34 H 0.35 14.68 4.52 -89.70 -0.41 14.28 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.09 5.87 -2.39 -0.01 2.08 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.24 321.13 3.42 -60.83 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.57 Total: 28.21 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 3.42 Total: -50.18 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.60 Total: -85.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.24 3.42 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.886 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds