Wall clock time and date at job start Mon Mar 30 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 H 1.08997 * 109.47020 * 324.99207 * 14 13 2 16 16 C 1.52995 * 109.47559 * 84.99842 * 14 13 2 17 17 C 1.53005 * 109.47226 * 204.99952 * 14 13 2 18 18 C 1.50695 * 109.47187 * 64.99339 * 17 14 13 19 19 C 1.38241 * 120.00441 * 269.73071 * 18 17 14 20 20 C 1.38235 * 119.99997 * 179.76494 * 19 18 17 21 21 C 1.38229 * 120.00088 * 0.50874 * 20 19 18 22 22 C 1.38238 * 120.00132 * 359.74618 * 21 20 19 23 23 C 1.38237 * 119.99941 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 28 28 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00728 * 321.04492 * 13 2 1 31 31 H 1.09007 * 109.46927 * 299.99830 * 16 14 13 32 32 H 1.08997 * 109.47472 * 59.99642 * 16 14 13 33 33 H 1.09001 * 109.47409 * 180.02562 * 16 14 13 34 34 H 1.08992 * 109.47627 * 184.99914 * 17 14 13 35 35 H 1.09003 * 109.46914 * 304.99976 * 17 14 13 36 36 H 1.08004 * 119.99563 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.99574 * 180.23025 * 20 19 18 38 38 H 1.08001 * 120.00211 * 179.72253 * 21 20 19 39 39 H 1.07997 * 120.00043 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00007 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 5.5411 -1.0995 2.4138 9 14 3.3015 -2.1080 3.6958 10 1 3.1709 -3.5381 3.3178 11 1 4.0448 -2.0004 4.9769 12 1 1.9504 -1.5129 3.8560 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 1 1.2575 0.9329 -2.2907 16 6 3.4110 0.9809 -2.3224 17 6 1.9769 -0.5796 -3.6454 18 6 0.6190 -1.2280 -3.7264 19 6 0.4254 -2.4941 -3.2063 20 6 -0.8215 -3.0869 -3.2763 21 6 -1.8721 -2.4179 -3.8757 22 6 -1.6773 -1.1540 -4.4005 23 6 -0.4319 -0.5588 -4.3254 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 6.0254 -1.5057 3.1496 30 1 1.4495 -1.4979 -1.4101 31 1 3.4861 1.5525 -1.3973 32 1 4.2359 0.2706 -2.3786 33 1 3.4574 1.6603 -3.1735 34 1 2.1123 0.0875 -4.4967 35 1 2.7485 -1.3493 -3.6607 36 1 1.2475 -3.0187 -2.7422 37 1 -0.9735 -4.0746 -2.8665 38 1 -2.8452 -2.8828 -3.9344 39 1 -2.4981 -0.6315 -4.8692 40 1 -0.2796 0.4285 -4.7358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:58 Heat of formation + Delta-G solvation = 7.032615 kcal Electronic energy + Delta-G solvation = -18176.937700 eV Core-core repulsion = 15569.677221 eV Total energy + Delta-G solvation = -2607.260479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51325 -37.24556 -34.10196 -32.18196 -30.93756 -30.90398 -28.32699 -27.38286 -26.25859 -22.78788 -22.57225 -21.54108 -19.96879 -19.55211 -16.76106 -16.52511 -15.64769 -15.27812 -14.90973 -14.49618 -14.03025 -13.66772 -13.39384 -13.01636 -12.89414 -12.61238 -12.22843 -12.15907 -11.80011 -11.72170 -11.60902 -11.59537 -11.02792 -10.90520 -10.79269 -10.63134 -10.49526 -9.99218 -9.70729 -9.50256 -8.96956 -8.91427 -8.64043 -8.36403 -7.51928 -5.85187 -3.78098 1.36430 1.39878 3.40061 3.47126 3.50303 3.78776 4.59817 4.74243 4.81463 4.90534 4.99576 5.12485 5.33144 5.45349 5.49991 5.52768 5.62028 5.67140 5.74183 5.87892 5.92638 5.95198 6.07206 6.09513 6.17988 6.23325 6.40923 6.46603 6.51418 6.56017 6.57093 6.69469 6.82095 6.94937 7.02206 7.25013 7.39736 7.91306 8.00082 8.21513 8.79575 9.27339 9.78606 11.28966 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.005984 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.425184 B = 4678.305251 C = 5165.358793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.099 3.901 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.079 0.921 7 C 0.059 3.941 8 N -0.911 5.911 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.660 5.660 14 C 0.092 3.908 15 H 0.034 0.966 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.258 0.742 30 H 0.331 0.669 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 0.100 -13.790 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.523 4.523 6 H 0.097 0.903 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.293 5.293 14 C -0.019 4.019 15 H 0.052 0.948 16 C -0.195 4.195 17 C -0.125 4.125 18 C -0.076 4.076 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.447 0.131 -13.517 18.375 hybrid contribution -1.453 -0.515 0.633 1.666 sum -13.899 -0.384 -12.884 18.956 Atomic orbital electron populations 1.22572 0.99649 1.01067 1.00690 1.21560 0.89518 0.98310 0.91705 0.91239 1.19604 0.97895 0.95010 0.91666 1.21065 0.89484 1.33455 1.08289 0.90330 1.25012 0.94663 0.96425 0.97858 1.69920 1.06378 1.46512 1.32326 0.86891 0.80366 0.80640 0.81947 1.20653 1.21764 1.19405 1.60655 1.57652 1.08603 1.02340 1.21427 0.97168 0.93755 0.89507 0.94802 1.21778 0.97273 0.99595 1.00847 1.20898 0.93405 0.99949 0.98227 1.20026 0.95981 0.94450 0.97188 1.21229 0.97686 0.95140 0.99457 1.21169 0.93125 0.99980 0.99167 1.21099 0.98845 0.95417 0.99441 1.21092 0.97042 0.95596 1.00193 1.21040 0.92865 0.99722 1.00173 0.94094 0.93284 0.92685 0.96717 0.97226 0.93194 0.84875 0.92069 0.91682 0.93809 0.90777 0.89881 0.85340 0.86144 0.86498 0.86478 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.15 37.16 0.34 -2.72 16 2 C 0.10 1.98 2.34 -67.72 -0.16 1.82 16 3 H 0.07 1.45 7.11 -51.93 -0.37 1.08 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 5 C -0.48 -13.89 9.39 -34.44 -0.32 -14.21 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 9 Si 0.87 22.32 27.47 -169.99 -4.67 17.66 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 13 N -0.66 -12.32 5.77 -99.74 -0.58 -12.90 16 14 C 0.09 1.43 2.45 -67.71 -0.17 1.26 16 15 H 0.03 0.53 7.11 -51.93 -0.37 0.16 16 16 C -0.14 -2.21 9.40 37.16 0.35 -1.86 16 17 C -0.09 -1.14 4.98 -27.88 -0.14 -1.28 16 18 C -0.08 -0.98 4.83 -104.62 -0.51 -1.48 16 19 C -0.12 -1.51 8.04 -39.58 -0.32 -1.83 16 20 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 21 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 24 H 0.04 0.64 7.43 -51.93 -0.39 0.25 16 25 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.33 5.81 5.26 -39.29 -0.21 5.61 16 31 H 0.06 1.11 7.43 -51.93 -0.39 0.72 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.13 1.67 7.55 -52.48 -0.40 1.27 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -31.29 321.48 -9.01 -40.31 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.69 Total: 3.87 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -2.70 Total: -25.88 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.20 Total: -40.80 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.29 -9.01 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.340 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds