Wall clock time and date at job start Mon Mar 30 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 H 1.08997 * 109.47020 * 324.99207 * 14 13 2 16 16 C 1.52995 * 109.47559 * 84.99842 * 14 13 2 17 17 C 1.53005 * 109.47226 * 204.99952 * 14 13 2 18 18 C 1.50695 * 109.47187 * 64.99339 * 17 14 13 19 19 C 1.38241 * 120.00441 * 269.73071 * 18 17 14 20 20 C 1.38235 * 119.99997 * 179.76494 * 19 18 17 21 21 C 1.38229 * 120.00088 * 0.50874 * 20 19 18 22 22 C 1.38238 * 120.00132 * 359.74618 * 21 20 19 23 23 C 1.38237 * 119.99941 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 28 28 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00728 * 321.04492 * 13 2 1 31 31 H 1.09007 * 109.46927 * 299.99830 * 16 14 13 32 32 H 1.08997 * 109.47472 * 59.99642 * 16 14 13 33 33 H 1.09001 * 109.47409 * 180.02562 * 16 14 13 34 34 H 1.08992 * 109.47627 * 184.99914 * 17 14 13 35 35 H 1.09003 * 109.46914 * 304.99976 * 17 14 13 36 36 H 1.08004 * 119.99563 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.99574 * 180.23025 * 20 19 18 38 38 H 1.08001 * 120.00211 * 179.72253 * 21 20 19 39 39 H 1.07997 * 120.00043 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00007 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 5.5411 -1.0995 2.4138 9 14 3.3015 -2.1080 3.6958 10 1 3.1709 -3.5381 3.3178 11 1 4.0448 -2.0004 4.9769 12 1 1.9504 -1.5129 3.8560 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 1 1.2575 0.9329 -2.2907 16 6 3.4110 0.9809 -2.3224 17 6 1.9769 -0.5796 -3.6454 18 6 0.6190 -1.2280 -3.7264 19 6 0.4254 -2.4941 -3.2063 20 6 -0.8215 -3.0869 -3.2763 21 6 -1.8721 -2.4179 -3.8757 22 6 -1.6773 -1.1540 -4.4005 23 6 -0.4319 -0.5588 -4.3254 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 6.0254 -1.5057 3.1496 30 1 1.4495 -1.4979 -1.4101 31 1 3.4861 1.5525 -1.3973 32 1 4.2359 0.2706 -2.3786 33 1 3.4574 1.6603 -3.1735 34 1 2.1123 0.0875 -4.4967 35 1 2.7485 -1.3493 -3.6607 36 1 1.2475 -3.0187 -2.7422 37 1 -0.9735 -4.0746 -2.8665 38 1 -2.8452 -2.8828 -3.9344 39 1 -2.4981 -0.6315 -4.8692 40 1 -0.2796 0.4285 -4.7358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:58 Heat of formation + Delta-G solvation = -11.059800 kcal Electronic energy + Delta-G solvation = -18177.722246 eV Core-core repulsion = 15569.677221 eV Total energy + Delta-G solvation = -2608.045025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47523 -38.58374 -35.62301 -34.18694 -32.09053 -31.75887 -30.16531 -28.88713 -27.31922 -24.70374 -23.45818 -22.61107 -21.25701 -21.13489 -18.74864 -17.61623 -16.96640 -16.54287 -16.07588 -15.82809 -15.60965 -15.06989 -14.63834 -14.23439 -14.19907 -14.02913 -13.90877 -13.41701 -13.31063 -13.20952 -12.85048 -12.80293 -12.58752 -12.36866 -12.09485 -11.81084 -11.76723 -11.65634 -11.49620 -11.36178 -11.11753 -10.65084 -9.78386 -9.54682 -8.95591 -8.14741 -6.12611 0.48860 0.53629 1.37693 1.38890 1.50052 2.43959 2.91137 3.18136 3.44902 3.84588 4.01456 4.09660 4.19967 4.24933 4.32499 4.38948 4.43229 4.54984 4.57264 4.65155 4.70943 4.84566 4.88107 4.99168 5.00233 5.10761 5.12298 5.19948 5.21519 5.27508 5.33851 5.49584 5.55155 5.62778 5.66873 5.77771 5.79311 6.17264 6.41718 6.57103 6.81220 6.95660 7.47569 9.02640 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.005984 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.425184 B = 4678.305251 C = 5165.358793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 H 0.055 0.945 4 C -0.002 4.002 5 C -0.484 4.484 6 H 0.038 0.962 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.682 5.682 14 C 0.096 3.904 15 H 0.042 0.958 16 C -0.133 4.133 17 C -0.078 4.078 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.126 4.126 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.011 0.989 29 H 0.260 0.740 30 H 0.337 0.663 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 -0.089 -14.489 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.007 4.007 3 H 0.073 0.927 4 C -0.040 4.040 5 C -0.523 4.523 6 H 0.057 0.943 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.316 5.316 14 C -0.014 4.014 15 H 0.060 0.940 16 C -0.191 4.191 17 C -0.116 4.116 18 C -0.090 4.090 19 C -0.154 4.154 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.144 4.144 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.520 -0.054 -14.233 21.058 hybrid contribution -0.460 -0.420 0.758 0.981 sum -15.980 -0.474 -13.475 20.908 Atomic orbital electron populations 1.22397 0.96598 1.01728 1.01906 1.21329 0.91829 0.96846 0.90691 0.92709 1.19567 0.94757 0.95600 0.94069 1.21313 0.91924 1.32139 1.06912 0.94326 1.25932 0.95500 0.97734 1.00758 1.70088 1.08366 1.48243 1.33539 0.85764 0.79652 0.79345 0.78420 1.19868 1.21528 1.17318 1.60528 1.58262 1.09641 1.03129 1.21420 0.96650 0.93639 0.89698 0.93995 1.21753 0.97148 0.99442 1.00778 1.20783 0.93717 0.99681 0.97393 1.20007 0.96009 0.94671 0.98297 1.21261 0.98103 0.95638 1.00355 1.21391 0.92912 1.00701 0.99352 1.21437 0.99558 0.95486 0.98458 1.21441 0.97407 0.95641 0.99581 1.21275 0.92867 1.00402 0.99843 0.92422 0.92841 0.91899 0.96440 0.97093 0.93169 0.84170 0.94954 0.93935 0.90447 0.88563 0.91153 0.86605 0.84931 0.84142 0.83974 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.28 9.15 71.98 0.66 -4.62 16 2 C 0.10 4.09 2.34 44.92 0.11 4.20 16 3 H 0.05 2.31 7.11 -2.39 -0.02 2.30 16 4 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 5 C -0.48 -28.53 9.39 25.60 0.24 -28.29 16 6 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 7 C 0.00 -0.29 5.47 84.65 0.46 0.17 16 8 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 9 Si 0.94 46.13 27.47 68.60 1.88 48.02 16 10 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 13 N -0.68 -25.58 5.77 -469.48 -2.71 -28.29 16 14 C 0.10 2.94 2.45 44.92 0.11 3.05 16 15 H 0.04 1.24 7.11 -2.39 -0.02 1.22 16 16 C -0.13 -4.39 9.40 71.98 0.68 -3.71 16 17 C -0.08 -1.96 4.98 29.85 0.15 -1.82 16 18 C -0.09 -2.16 4.83 -19.87 -0.10 -2.25 16 19 C -0.14 -3.37 8.04 22.27 0.18 -3.19 16 20 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 21 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 22 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.13 -2.58 9.70 22.27 0.22 -2.37 16 24 H 0.06 1.63 7.43 -2.39 -0.02 1.61 16 25 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 28 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 29 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.34 11.76 5.26 -89.70 -0.47 11.29 16 31 H 0.03 1.22 7.43 -2.38 -0.02 1.20 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 36 H 0.12 3.07 7.55 -2.91 -0.02 3.05 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -68.75 321.48 3.42 -65.33 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.46 Total: 22.46 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 3.48 Total: -45.51 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -2.41 Total: -90.30 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Total: -68.75 3.42 -65.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.266 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds