Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46574 * 2 1 4 4 C 1.53000 * 109.47418 * 239.99826 * 2 1 3 5 5 C 1.50700 * 109.46906 * 174.99821 * 4 2 1 6 6 H 1.07995 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99614 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99687 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47002 * 60.00534 * 9 7 5 11 11 H 1.48501 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47381 * 299.99887 * 9 7 5 13 13 N 1.46897 * 109.46937 * 119.99709 * 2 1 3 14 14 C 1.46910 * 111.00178 * 275.00105 * 13 2 1 15 15 C 1.52992 * 109.47127 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47103 * 304.99844 * 15 14 13 17 17 C 1.52997 * 109.47482 * 65.00091 * 15 14 13 18 18 C 1.50699 * 109.46956 * 185.00156 * 15 14 13 19 19 C 1.38233 * 119.99992 * 299.72429 * 18 15 14 20 20 C 1.38243 * 119.99841 * 179.78539 * 19 18 15 21 21 C 1.38234 * 120.00004 * 0.44508 * 20 19 18 22 22 C 1.38230 * 119.99789 * 359.80856 * 21 20 19 23 23 C 1.38230 * 120.00498 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47568 * 300.00422 * 1 2 3 26 26 H 1.08998 * 109.46952 * 60.00131 * 1 2 3 27 27 H 1.08998 * 109.46784 * 294.99881 * 4 2 1 28 28 H 1.08997 * 109.47135 * 54.99685 * 4 2 1 29 29 H 0.96998 * 120.00379 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00466 * 38.95453 * 13 2 1 31 31 H 1.08996 * 109.46545 * 59.99934 * 14 13 2 32 32 H 1.09001 * 109.46699 * 300.00610 * 14 13 2 33 33 H 1.09002 * 109.47153 * 59.99783 * 17 15 14 34 34 H 1.09001 * 109.46832 * 299.99974 * 17 15 14 35 35 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 36 36 H 1.07994 * 119.99958 * 0.02562 * 19 18 15 37 37 H 1.08001 * 119.99748 * 180.27191 * 20 19 18 38 38 H 1.08002 * 119.99524 * 179.83024 * 21 20 19 39 39 H 1.08004 * 119.99784 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00045 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6148 -1.3126 6 1 4.0789 -0.0860 -0.5391 7 6 4.2306 -1.1935 -2.3577 8 7 3.5766 -1.8378 -3.2993 9 14 6.0921 -1.0610 -2.4366 10 1 6.6846 -1.6860 -1.2269 11 1 6.5873 -1.7622 -3.6484 12 1 6.4844 0.3700 -2.4972 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2227 2.3470 15 6 2.5961 -0.5327 3.5742 16 1 1.9708 -1.4080 3.7501 17 6 4.0398 -0.9776 3.3320 18 6 2.5445 0.3717 4.7786 19 6 3.2682 1.5494 4.7901 20 6 3.2174 2.3811 5.8932 21 6 2.4502 2.0306 6.9883 22 6 1.7307 0.8503 6.9789 23 6 1.7779 0.0208 5.8741 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.0610 -2.2453 -4.0343 30 1 1.4496 -1.4978 1.4101 31 1 1.0870 0.6164 2.5525 32 1 2.7587 1.0464 2.1182 33 1 4.6651 -0.1022 3.1561 34 1 4.0770 -1.6317 2.4608 35 1 4.4059 -1.5154 4.2065 36 1 3.8702 1.8216 3.9358 37 1 3.7794 3.3033 5.9004 38 1 2.4127 2.6791 7.8512 39 1 1.1316 0.5763 7.8347 40 1 1.2154 -0.9011 5.8667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = -14.514441 kcal Electronic energy + Delta-G solvation = -17647.728515 eV Core-core repulsion = 15039.533686 eV Total energy + Delta-G solvation = -2608.194829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42091 -38.43437 -35.91853 -34.45641 -31.76465 -31.57250 -29.83960 -29.01018 -26.34291 -24.96277 -23.87082 -23.12639 -21.54138 -20.69356 -18.34769 -17.70768 -16.60218 -16.46501 -16.15850 -15.92300 -15.55483 -15.03797 -14.50605 -14.43985 -14.14848 -13.96797 -13.74081 -13.46840 -13.22017 -13.17836 -12.87542 -12.74478 -12.50264 -12.38794 -12.18537 -12.10919 -11.86140 -11.58247 -11.47725 -11.10225 -11.03800 -10.46183 -9.77021 -9.54869 -8.95899 -8.07466 -6.11920 0.50461 0.54971 1.42190 1.45100 1.52352 2.48960 2.92166 3.24382 3.41755 3.85658 4.00645 4.19451 4.22447 4.26575 4.30334 4.34853 4.49281 4.55547 4.58458 4.68734 4.70984 4.84028 4.86190 5.02461 5.09744 5.16692 5.21241 5.23038 5.28757 5.30527 5.48882 5.53451 5.64501 5.67265 5.71690 5.82876 5.92474 6.17906 6.35848 6.51319 6.76952 7.01948 7.53440 9.04672 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.004920 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.381667 B = 5689.773636 C = 6310.227076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.054 0.946 4 C 0.039 3.961 5 C -0.497 4.497 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.676 5.676 14 C 0.078 3.922 15 C -0.041 4.041 16 H 0.082 0.918 17 C -0.129 4.129 18 C -0.081 4.081 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.129 4.129 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.055 0.945 27 H -0.009 1.009 28 H -0.010 1.010 29 H 0.258 0.742 30 H 0.336 0.664 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 6.016 20.751 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.306 5.306 14 C -0.051 4.051 15 C -0.060 4.060 16 H 0.100 0.900 17 C -0.187 4.187 18 C -0.082 4.082 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.242 6.014 20.428 21.540 hybrid contribution 0.019 -0.048 -0.524 0.527 sum -3.223 5.966 19.904 21.027 Atomic orbital electron populations 1.22403 0.96886 1.01776 1.01717 1.21438 0.91948 0.96721 0.90930 0.92718 1.18984 0.95124 0.94188 0.91579 1.21447 0.93362 1.32231 1.06464 0.92596 1.25844 1.02787 0.95727 0.95787 1.70085 1.37115 1.38104 1.13112 0.85661 0.80750 0.78307 0.77236 1.19664 1.21299 1.19599 1.60361 1.58016 1.09343 1.02912 1.21916 0.98461 0.95031 0.89674 1.20052 0.97995 0.96822 0.91107 0.90014 1.21655 0.94831 1.01052 1.01117 1.19931 0.97212 0.95496 0.95512 1.21176 0.99796 0.94831 0.98981 1.21409 0.99533 0.99991 0.93585 1.21455 0.97190 0.97460 0.98921 1.21441 0.99553 0.94653 0.98561 1.21309 0.99327 1.00617 0.93424 0.92701 0.91988 0.92637 0.99034 0.99173 0.93318 0.84569 0.95509 0.92591 0.93597 0.92697 0.92595 0.86666 0.84653 0.83973 0.83942 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 9.16 71.98 0.66 -4.93 16 2 C 0.10 4.04 2.53 44.92 0.11 4.16 16 3 H 0.05 2.30 7.80 -2.38 -0.02 2.28 16 4 C 0.04 2.04 4.65 29.85 0.14 2.18 16 5 C -0.50 -28.58 8.84 25.60 0.23 -28.35 16 6 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 9 Si 0.95 46.00 29.54 68.60 2.03 48.03 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.68 -24.69 5.42 -491.56 -2.66 -27.35 16 14 C 0.08 2.38 4.62 86.30 0.40 2.78 16 15 C -0.04 -1.08 2.70 -11.54 -0.03 -1.11 16 16 H 0.08 1.99 7.88 -2.39 -0.02 1.97 16 17 C -0.13 -3.73 8.89 71.98 0.64 -3.09 16 18 C -0.08 -1.94 4.78 -19.87 -0.09 -2.03 16 19 C -0.13 -3.07 8.76 22.27 0.20 -2.88 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 22 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 23 C -0.13 -2.65 9.67 22.27 0.22 -2.44 16 24 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 25 H 0.06 1.75 7.45 -2.39 -0.02 1.73 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.34 11.40 8.47 -89.70 -0.76 10.64 16 31 H 0.03 0.77 7.44 -2.39 -0.02 0.75 16 32 H 0.06 1.84 7.50 -2.39 -0.02 1.82 16 33 H 0.04 1.35 7.37 -2.39 -0.02 1.33 16 34 H 0.05 1.86 7.75 -2.39 -0.02 1.84 16 35 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.12 2.81 7.16 -2.91 -0.02 2.79 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.13 2.29 7.95 -2.91 -0.02 2.27 16 Total: -1.00 -65.38 327.47 3.47 -61.91 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.23 Total: 17.70 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.59 Total: -41.92 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.38 Total: -85.72 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -65.38 3.47 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.398 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds