Wall clock time and date at job start Mon Mar 30 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 C 1.52990 * 109.47134 * 119.99596 * 2 1 3 5 5 C 1.50701 * 109.47238 * 185.00115 * 4 2 1 6 6 H 1.08004 * 119.99946 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00470 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99759 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00248 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47068 * 120.00032 * 9 7 5 12 12 H 1.48494 * 109.47417 * 239.99938 * 9 7 5 13 13 N 1.46897 * 109.46973 * 239.99951 * 2 1 3 14 14 C 1.46905 * 111.00213 * 84.99847 * 13 2 1 15 15 C 1.52999 * 109.47066 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47247 * 305.00049 * 15 14 13 17 17 C 1.52997 * 109.47233 * 65.00023 * 15 14 13 18 18 C 1.50696 * 109.47204 * 185.00162 * 15 14 13 19 19 C 1.38230 * 120.00346 * 119.99656 * 18 15 14 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 15 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09003 * 109.47318 * 300.00551 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00220 * 1 2 3 26 26 H 1.08999 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47427 * 304.99869 * 4 2 1 28 28 H 1.09001 * 109.47335 * 65.00120 * 4 2 1 29 29 H 0.97000 * 119.99874 * 179.97438 * 8 7 5 30 30 H 1.00893 * 110.99968 * 321.04068 * 13 2 1 31 31 H 1.08995 * 109.46797 * 59.99904 * 14 13 2 32 32 H 1.08997 * 109.47158 * 300.00054 * 14 13 2 33 33 H 1.08998 * 109.47256 * 180.02562 * 17 15 14 34 34 H 1.09002 * 109.47080 * 300.00034 * 17 15 14 35 35 H 1.08998 * 109.47232 * 59.99412 * 17 15 14 36 36 H 1.08000 * 120.00356 * 359.97438 * 19 18 15 37 37 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 38 38 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0853 0.5396 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8358 3.3006 9 14 6.0921 -1.0611 2.4366 10 1 6.5837 -0.2917 1.2655 11 1 6.4871 -0.3644 3.6873 12 1 6.6855 -2.4223 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5961 -0.5330 -3.5742 16 1 3.5519 -1.0011 -3.3388 17 6 1.5845 -1.6102 -3.9703 18 6 2.7772 0.4311 -4.7182 19 6 4.0245 0.5988 -5.2899 20 6 4.1908 1.4835 -6.3390 21 6 3.1095 2.2003 -6.8166 22 6 1.8622 2.0327 -6.2447 23 6 1.6959 1.1479 -5.1957 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2615 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 4.0608 -2.2424 4.0361 30 1 1.4496 -1.4979 -1.4099 31 1 2.7587 1.0461 -2.1183 32 1 1.0870 0.6163 -2.5526 33 1 1.9507 -2.1487 -4.8444 34 1 1.4535 -2.3075 -3.1429 35 1 0.6287 -1.1421 -4.2056 36 1 4.8694 0.0392 -4.9166 37 1 5.1662 1.6181 -6.7826 38 1 3.2394 2.8918 -7.6359 39 1 1.0173 2.5923 -6.6181 40 1 0.7213 1.0167 -4.7492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:32 Heat of formation + Delta-G solvation = 2.330721 kcal Electronic energy + Delta-G solvation = -17615.433840 eV Core-core repulsion = 15007.969472 eV Total energy + Delta-G solvation = -2607.464368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53014 -37.08163 -34.59067 -32.41171 -30.92676 -30.24422 -28.64127 -27.20424 -25.28847 -23.20443 -22.73317 -22.13606 -19.90025 -19.52678 -16.86931 -16.20278 -15.56184 -15.17901 -14.60544 -14.44714 -14.25754 -13.87228 -13.41705 -13.22451 -12.90593 -12.84621 -12.39131 -12.11476 -11.88180 -11.75051 -11.44960 -11.28674 -11.14597 -10.76500 -10.73363 -10.57524 -10.46175 -10.29215 -9.99645 -9.23468 -8.93702 -8.92014 -8.65616 -8.21518 -7.50207 -5.83662 -3.80761 1.35813 1.38731 3.41027 3.48206 3.53778 3.77721 4.60549 4.62902 4.82339 4.94603 5.05467 5.12014 5.27636 5.32283 5.47709 5.53401 5.54018 5.59062 5.77161 5.87309 5.88207 5.96241 6.02092 6.06077 6.08808 6.17569 6.30429 6.35701 6.48064 6.49779 6.51960 6.67017 6.75406 7.00361 7.07877 7.61582 7.74400 8.07686 8.12234 8.23511 8.65591 9.24936 9.80360 11.28624 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.005040 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.627509 B = 5554.141786 C = 6310.187560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.664 5.664 14 C 0.071 3.929 15 C -0.055 4.055 16 H 0.090 0.910 17 C -0.143 4.143 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.256 0.744 30 H 0.330 0.670 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 5.177 -18.676 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.074 4.074 16 H 0.108 0.892 17 C -0.200 4.200 18 C -0.066 4.066 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.519 5.168 -18.345 19.381 hybrid contribution 0.086 0.162 -0.096 0.207 sum -3.433 5.330 -18.441 19.501 Atomic orbital electron populations 1.22553 0.99635 1.01115 1.00548 1.21783 0.89800 0.98159 0.92304 0.91879 1.19117 0.96244 0.95362 0.89745 1.21198 0.91936 1.32587 1.06669 0.92334 1.25006 0.97944 0.96000 0.96067 1.69977 1.35027 1.37236 1.12392 0.86588 0.86578 0.77528 0.77577 1.19871 1.21458 1.21321 1.60556 1.57790 1.08624 1.02491 1.21948 0.98230 0.95625 0.90056 1.20224 1.01093 0.94293 0.91782 0.89215 1.21842 0.98300 0.98421 1.01481 1.19969 0.93238 0.96887 0.96465 1.21156 0.97001 0.98788 0.96424 1.21129 0.98687 0.96877 0.97144 1.21090 0.93180 1.00213 1.00450 1.21112 0.97282 0.98745 0.96834 1.21025 0.98737 0.96699 0.96890 0.92528 0.94478 0.93084 0.96536 0.96540 0.93455 0.85153 0.91403 0.96317 0.92803 0.91619 0.93066 0.85936 0.86317 0.86513 0.86426 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.16 37.16 0.34 -2.71 16 2 C 0.09 1.82 2.53 -67.72 -0.17 1.65 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 4 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 5 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.75 13.29 55.43 0.74 -27.01 16 9 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.66 -12.36 5.96 -106.73 -0.64 -13.00 16 14 C 0.07 1.11 4.68 -3.82 -0.02 1.10 16 15 C -0.06 -0.75 2.77 -91.78 -0.25 -1.00 16 16 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 17 C -0.14 -1.71 8.78 37.16 0.33 -1.38 16 18 C -0.07 -0.83 4.78 -104.62 -0.50 -1.33 16 19 C -0.12 -1.41 9.67 -39.59 -0.38 -1.79 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.12 -1.36 8.76 -39.58 -0.35 -1.70 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 26 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.33 5.70 6.72 -39.30 -0.26 5.44 16 31 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.02 0.27 6.87 -51.93 -0.36 -0.08 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.81 6.68 -51.93 -0.35 0.46 16 35 H 0.05 0.57 7.39 -51.93 -0.38 0.18 16 36 H 0.12 1.39 7.95 -52.49 -0.42 0.97 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 1.29 7.16 -52.49 -0.38 0.91 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -30.82 325.21 -9.44 -40.25 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.69 Total: 1.92 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.73 Total: -24.44 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.10 Total: -40.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.82 -9.44 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.586 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds