Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 C 1.52990 * 109.47134 * 119.99596 * 2 1 3 5 5 C 1.50701 * 109.47238 * 185.00115 * 4 2 1 6 6 H 1.08004 * 119.99946 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00470 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99759 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00248 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47068 * 120.00032 * 9 7 5 12 12 H 1.48494 * 109.47417 * 239.99938 * 9 7 5 13 13 N 1.46897 * 109.46973 * 239.99951 * 2 1 3 14 14 C 1.46905 * 111.00213 * 84.99847 * 13 2 1 15 15 C 1.52999 * 109.47066 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47247 * 305.00049 * 15 14 13 17 17 C 1.52997 * 109.47233 * 65.00023 * 15 14 13 18 18 C 1.50696 * 109.47204 * 185.00162 * 15 14 13 19 19 C 1.38230 * 120.00346 * 119.99656 * 18 15 14 20 20 C 1.38235 * 120.00326 * 180.02562 * 19 18 15 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.00062 * 0.02871 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97128 * 22 21 20 24 24 H 1.09003 * 109.47318 * 300.00551 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00220 * 1 2 3 26 26 H 1.08999 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47427 * 304.99869 * 4 2 1 28 28 H 1.09001 * 109.47335 * 65.00120 * 4 2 1 29 29 H 0.97000 * 119.99874 * 179.97438 * 8 7 5 30 30 H 1.00893 * 110.99968 * 321.04068 * 13 2 1 31 31 H 1.08995 * 109.46797 * 59.99904 * 14 13 2 32 32 H 1.08997 * 109.47158 * 300.00054 * 14 13 2 33 33 H 1.08998 * 109.47256 * 180.02562 * 17 15 14 34 34 H 1.09002 * 109.47080 * 300.00034 * 17 15 14 35 35 H 1.08998 * 109.47232 * 59.99412 * 17 15 14 36 36 H 1.08000 * 120.00356 * 359.97438 * 19 18 15 37 37 H 1.08000 * 120.00616 * 179.70664 * 20 19 18 38 38 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.00087 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0853 0.5396 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8358 3.3006 9 14 6.0921 -1.0611 2.4366 10 1 6.5837 -0.2917 1.2655 11 1 6.4871 -0.3644 3.6873 12 1 6.6855 -2.4223 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5961 -0.5330 -3.5742 16 1 3.5519 -1.0011 -3.3388 17 6 1.5845 -1.6102 -3.9703 18 6 2.7772 0.4311 -4.7182 19 6 4.0245 0.5988 -5.2899 20 6 4.1908 1.4835 -6.3390 21 6 3.1095 2.2003 -6.8166 22 6 1.8622 2.0327 -6.2447 23 6 1.6959 1.1479 -5.1957 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2615 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 4.0608 -2.2424 4.0361 30 1 1.4496 -1.4979 -1.4099 31 1 2.7587 1.0461 -2.1183 32 1 1.0870 0.6163 -2.5526 33 1 1.9507 -2.1487 -4.8444 34 1 1.4535 -2.3075 -3.1429 35 1 0.6287 -1.1421 -4.2056 36 1 4.8694 0.0392 -4.9166 37 1 5.1662 1.6181 -6.7826 38 1 3.2394 2.8918 -7.6359 39 1 1.0173 2.5923 -6.6181 40 1 0.7213 1.0167 -4.7492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = -14.741519 kcal Electronic energy + Delta-G solvation = -17616.174148 eV Core-core repulsion = 15007.969472 eV Total energy + Delta-G solvation = -2608.204676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44203 -38.48248 -35.94384 -34.44824 -31.77148 -31.57651 -29.79747 -29.04743 -26.49021 -25.02885 -23.80066 -23.13360 -21.45277 -20.71556 -18.38392 -17.74124 -16.79419 -16.51443 -16.17790 -15.79361 -15.46335 -15.09829 -14.49995 -14.42124 -14.18891 -14.02011 -13.76513 -13.56399 -13.29035 -13.17653 -12.89493 -12.81219 -12.56360 -12.35621 -12.19982 -11.93065 -11.85033 -11.62883 -11.55419 -11.08181 -11.05307 -10.48542 -9.77562 -9.54842 -8.97499 -8.09171 -6.13730 0.50240 0.54618 1.40762 1.41569 1.54745 2.47849 2.91753 3.22808 3.41747 3.89899 3.97344 4.15527 4.20548 4.25380 4.29385 4.33791 4.47416 4.52289 4.58522 4.66340 4.70111 4.77293 4.91746 4.96759 5.06343 5.16429 5.19691 5.22735 5.26352 5.29473 5.38049 5.52243 5.63244 5.66462 5.70351 5.82250 5.91232 6.17658 6.34896 6.50881 6.77543 7.00447 7.51815 9.03229 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.005040 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.627509 B = 5554.141786 C = 6310.187560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.498 4.498 6 H 0.053 0.947 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.682 5.682 14 C 0.080 3.920 15 C -0.048 4.048 16 H 0.069 0.931 17 C -0.138 4.138 18 C -0.081 4.081 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.125 4.125 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.054 0.946 27 H -0.009 1.009 28 H -0.008 1.008 29 H 0.259 0.741 30 H 0.338 0.662 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 6.151 -20.705 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.313 5.313 14 C -0.049 4.049 15 C -0.067 4.067 16 H 0.088 0.912 17 C -0.195 4.195 18 C -0.081 4.081 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.579 6.147 -20.391 21.596 hybrid contribution 0.102 -0.117 0.496 0.520 sum -3.477 6.030 -19.895 21.077 Atomic orbital electron populations 1.22402 0.96633 1.01828 1.01895 1.21447 0.92157 0.96686 0.90875 0.92789 1.19000 0.95080 0.94230 0.91678 1.21510 0.93472 1.32203 1.06429 0.92832 1.25856 1.02894 0.95702 0.95757 1.70099 1.36980 1.38169 1.13067 0.85522 0.80677 0.77706 0.77838 1.19199 1.20705 1.20753 1.60373 1.58379 1.09566 1.03017 1.21880 0.98724 0.94713 0.89632 1.20081 1.00429 0.94737 0.91403 0.91207 1.21795 0.98430 0.97833 1.01445 1.19923 0.94024 0.97531 0.96647 1.21303 0.96925 0.99680 0.97386 1.21410 1.00001 0.96344 0.96641 1.21460 0.92798 1.00051 1.00760 1.21445 0.98324 0.98309 0.96218 1.21180 0.98705 0.96954 0.97462 0.92565 0.91691 0.92703 0.99028 0.98997 0.93272 0.84276 0.93395 0.94567 0.92054 0.92323 0.91775 0.86173 0.84437 0.83947 0.84080 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 9.16 71.98 0.66 -4.87 16 2 C 0.10 4.03 2.53 44.91 0.11 4.14 16 3 H 0.05 2.30 7.80 -2.38 -0.02 2.28 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.50 -29.02 8.84 25.60 0.23 -28.80 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 9 Si 0.96 46.41 29.54 68.60 2.03 48.43 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.68 -25.35 5.96 -491.59 -2.93 -28.28 16 14 C 0.08 2.45 4.68 86.30 0.40 2.85 16 15 C -0.05 -1.27 2.77 -11.54 -0.03 -1.30 16 16 H 0.07 2.11 7.88 -2.39 -0.02 2.09 16 17 C -0.14 -3.12 8.78 71.98 0.63 -2.49 16 18 C -0.08 -1.97 4.78 -19.87 -0.09 -2.07 16 19 C -0.13 -3.19 9.67 22.27 0.22 -2.97 16 20 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 21 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.69 8.76 22.27 0.20 -2.49 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.77 7.45 -2.39 -0.02 1.76 16 26 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 27 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.34 11.55 6.72 -89.70 -0.60 10.95 16 31 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 32 H 0.04 0.99 6.87 -2.39 -0.02 0.97 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.40 6.68 -2.39 -0.02 1.38 16 35 H 0.06 1.28 7.39 -2.39 -0.02 1.26 16 36 H 0.12 2.76 7.95 -2.91 -0.02 2.74 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.13 2.44 7.16 -2.91 -0.02 2.42 16 Total: -1.00 -66.53 325.21 3.36 -63.17 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.39 Total: 17.39 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.59 Total: -42.27 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.65 Total: -86.73 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -66.53 3.36 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.426 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds