Wall clock time and date at job start Mon Mar 30 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.53001 * 109.47222 * 120.00316 * 2 1 3 5 5 N 1.46903 * 109.46980 * 294.99896 * 4 2 1 6 6 C 1.46899 * 110.99807 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46901 * 325.00224 * 6 5 4 8 8 C 1.53006 * 109.47163 * 84.99961 * 6 5 4 9 9 C 1.52997 * 109.47254 * 205.00073 * 6 5 4 10 10 C 1.50695 * 109.46942 * 65.00153 * 9 6 5 11 11 H 1.07997 * 120.00519 * 359.97438 * 10 9 6 12 12 C 1.37880 * 120.00112 * 180.02562 * 10 9 6 13 13 N 1.31519 * 119.99591 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00351 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47149 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47452 * 119.99539 * 14 12 10 17 17 H 1.48497 * 109.47166 * 239.99612 * 14 12 10 18 18 C 1.50701 * 109.46956 * 240.00404 * 2 1 3 19 19 C 1.38231 * 119.99798 * 299.72358 * 18 2 1 20 20 C 1.38242 * 119.99845 * 179.81099 * 19 18 2 21 21 C 1.38233 * 119.99806 * 0.39788 * 20 19 18 22 22 C 1.38231 * 119.99959 * 359.85526 * 21 20 19 23 23 C 1.38232 * 120.00434 * 359.95841 * 22 21 20 24 24 H 1.09002 * 109.47212 * 299.99596 * 1 2 3 25 25 H 1.08998 * 109.47150 * 59.99934 * 1 2 3 26 26 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46678 * 174.99775 * 4 2 1 28 28 H 1.08999 * 109.46902 * 55.00285 * 4 2 1 29 29 H 1.00901 * 111.00110 * 56.04800 * 5 4 2 30 30 H 1.09001 * 109.47002 * 59.99764 * 8 6 5 31 31 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47050 * 300.00030 * 8 6 5 33 33 H 1.08998 * 109.47192 * 185.00258 * 9 6 5 34 34 H 1.08998 * 109.46934 * 305.00104 * 9 6 5 35 35 H 0.97002 * 120.00100 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.00251 * 0.02562 * 19 18 2 37 37 H 1.07998 * 119.99959 * 180.22974 * 20 19 18 38 38 H 1.08003 * 119.99735 * 179.83543 * 21 20 19 39 39 H 1.08004 * 120.00180 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00423 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1248 -0.6273 3.6672 7 1 2.0808 -1.7081 3.5330 8 6 3.5686 -0.2069 3.9498 9 6 1.2360 -0.2229 4.8450 10 6 -0.1602 -0.7445 4.6229 11 1 -0.3908 -1.3077 3.7307 12 6 -1.1438 -0.5018 5.5582 13 7 -0.8632 0.1845 6.6445 14 14 -2.8747 -1.1477 5.2826 15 1 -2.9295 -1.8824 3.9933 16 1 -3.2434 -2.0644 6.3912 17 1 -3.8275 -0.0093 5.2440 18 6 2.0323 -0.7103 -1.2305 19 6 1.7030 -2.0354 -1.4464 20 6 2.1606 -2.6859 -2.5772 21 6 2.9541 -2.0136 -3.4878 22 6 3.2877 -0.6901 -3.2692 23 6 2.8270 -0.0385 -2.1405 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 1.2054 28 1 1.6055 -1.7199 1.2950 29 1 0.6529 0.1792 2.4754 30 1 3.6126 0.8740 4.0838 31 1 3.9199 -0.7004 4.8558 32 1 4.2018 -0.4950 3.1107 33 1 1.6391 -0.6443 5.7658 34 1 1.2096 0.8639 4.9239 35 1 -1.5549 0.3550 7.3027 36 1 1.0855 -2.5614 -0.7335 37 1 1.9003 -3.7200 -2.7478 38 1 3.3138 -2.5226 -4.3699 39 1 3.9080 -0.1649 -3.9804 40 1 3.0880 0.9955 -1.9695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:37 Heat of formation + Delta-G solvation = -2.807976 kcal Electronic energy + Delta-G solvation = -17667.019592 eV Core-core repulsion = 15059.332393 eV Total energy + Delta-G solvation = -2607.687199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51211 -36.99165 -34.57488 -32.49094 -30.92213 -30.25749 -28.57536 -27.37306 -25.25493 -23.22642 -22.73260 -22.09673 -19.71682 -19.35177 -16.83742 -16.34141 -15.58145 -15.35498 -14.68810 -14.55476 -14.23039 -13.84194 -13.38981 -13.12494 -12.95976 -12.78316 -12.40674 -11.93046 -11.80554 -11.58151 -11.31782 -11.22861 -11.15238 -10.85760 -10.72040 -10.63257 -10.43802 -10.36761 -10.13439 -9.21435 -9.04870 -8.92960 -8.65069 -8.39885 -7.60943 -6.02983 -4.06013 1.36593 1.39221 3.28196 3.36333 3.38913 3.78532 4.42711 4.66579 4.84201 4.95908 5.08741 5.13563 5.30494 5.36754 5.42693 5.50559 5.55912 5.63415 5.94655 5.98516 6.01219 6.04519 6.09853 6.24683 6.25803 6.32121 6.36440 6.41356 6.48575 6.55010 6.59087 6.76492 6.95536 6.97817 7.01413 7.54670 7.64779 7.97152 8.08862 8.31219 8.38797 9.00443 9.58192 11.07988 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.004920 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.275210 B = 5689.135375 C = 6306.116022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 H 0.085 0.915 4 C 0.070 3.930 5 N -0.684 5.684 6 C 0.087 3.913 7 H 0.028 0.972 8 C -0.135 4.135 9 C 0.020 3.980 10 C -0.523 4.523 11 H 0.052 0.948 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.065 4.065 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.118 4.118 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.354 0.646 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.021 0.979 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -2.357 -17.333 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 H 0.103 0.897 4 C -0.060 4.060 5 N -0.319 5.319 6 C -0.022 4.022 7 H 0.046 0.954 8 C -0.193 4.193 9 C -0.018 4.018 10 C -0.561 4.561 11 H 0.070 0.930 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.065 4.065 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.176 0.824 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.920 -1.862 -17.186 18.620 hybrid contribution -1.581 -1.180 -0.037 1.973 sum 5.339 -3.041 -17.223 18.286 Atomic orbital electron populations 1.21869 0.94274 1.02016 1.02215 1.20210 0.96052 0.99702 0.91203 0.89659 1.21943 0.99771 0.94489 0.89833 1.60602 1.21472 1.49048 1.00751 1.21602 0.94417 0.94888 0.91309 0.95418 1.21792 0.96623 1.01507 0.99364 1.19286 0.93115 0.97562 0.91792 1.21209 0.94859 1.34445 1.05596 0.92996 1.24987 0.98769 0.95123 0.95203 1.69974 1.33448 1.39769 1.09772 0.86600 0.84928 0.78721 0.78136 1.19834 1.21050 1.20939 1.19989 0.96491 0.94106 0.95963 1.21087 1.00138 0.94510 0.97486 1.21133 0.98252 0.99772 0.94692 1.21086 0.99363 0.94990 0.99529 1.21107 1.00246 0.94973 0.97650 1.21111 0.98064 0.99993 0.94416 0.91137 0.92914 0.92810 0.91936 0.95813 0.82380 0.92658 0.93394 0.94553 0.96081 0.95587 0.93009 0.86074 0.86362 0.86522 0.86383 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.78 37.16 0.33 -1.71 16 2 C -0.05 -0.74 2.77 -91.77 -0.25 -0.99 16 3 H 0.09 1.19 7.88 -51.93 -0.41 0.78 16 4 C 0.07 1.13 4.68 -3.82 -0.02 1.11 16 5 N -0.68 -13.16 6.31 -106.72 -0.67 -13.83 16 6 C 0.09 1.84 2.59 -67.71 -0.18 1.66 16 7 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 8 C -0.13 -2.48 9.42 37.16 0.35 -2.13 16 9 C 0.02 0.51 4.57 -27.89 -0.13 0.38 16 10 C -0.52 -14.31 8.12 -34.44 -0.28 -14.59 16 11 H 0.05 1.39 7.49 -52.49 -0.39 0.99 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.06 -0.84 4.78 -104.62 -0.50 -1.34 16 19 C -0.11 -1.43 8.76 -39.58 -0.35 -1.77 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.13 -1.36 10.05 -39.59 -0.40 -1.75 16 22 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.38 9.67 -39.58 -0.38 -1.76 16 24 H 0.07 1.07 6.68 -51.93 -0.35 0.73 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 27 H 0.06 1.01 7.44 -51.93 -0.39 0.62 16 28 H 0.02 0.40 7.47 -51.93 -0.39 0.01 16 29 H 0.35 7.31 5.46 -39.29 -0.21 7.10 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.12 1.50 7.16 -52.49 -0.38 1.12 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.25 7.95 -52.49 -0.42 0.84 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -29.11 323.55 -9.40 -38.51 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.62 Total: 4.53 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -2.70 Total: -24.69 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.06 Total: -39.52 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.11 -9.40 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds