Wall clock time and date at job start Mon Mar 30 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.53001 * 109.47222 * 120.00316 * 2 1 3 5 5 N 1.46903 * 109.46980 * 294.99896 * 4 2 1 6 6 C 1.46899 * 110.99807 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46901 * 325.00224 * 6 5 4 8 8 C 1.53006 * 109.47163 * 84.99961 * 6 5 4 9 9 C 1.52997 * 109.47254 * 205.00073 * 6 5 4 10 10 C 1.50695 * 109.46942 * 65.00153 * 9 6 5 11 11 H 1.07997 * 120.00519 * 359.97438 * 10 9 6 12 12 C 1.37880 * 120.00112 * 180.02562 * 10 9 6 13 13 N 1.31519 * 119.99591 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00351 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47149 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47452 * 119.99539 * 14 12 10 17 17 H 1.48497 * 109.47166 * 239.99612 * 14 12 10 18 18 C 1.50701 * 109.46956 * 240.00404 * 2 1 3 19 19 C 1.38231 * 119.99798 * 299.72358 * 18 2 1 20 20 C 1.38242 * 119.99845 * 179.81099 * 19 18 2 21 21 C 1.38233 * 119.99806 * 0.39788 * 20 19 18 22 22 C 1.38231 * 119.99959 * 359.85526 * 21 20 19 23 23 C 1.38232 * 120.00434 * 359.95841 * 22 21 20 24 24 H 1.09002 * 109.47212 * 299.99596 * 1 2 3 25 25 H 1.08998 * 109.47150 * 59.99934 * 1 2 3 26 26 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46678 * 174.99775 * 4 2 1 28 28 H 1.08999 * 109.46902 * 55.00285 * 4 2 1 29 29 H 1.00901 * 111.00110 * 56.04800 * 5 4 2 30 30 H 1.09001 * 109.47002 * 59.99764 * 8 6 5 31 31 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47050 * 300.00030 * 8 6 5 33 33 H 1.08998 * 109.47192 * 185.00258 * 9 6 5 34 34 H 1.08998 * 109.46934 * 305.00104 * 9 6 5 35 35 H 0.97002 * 120.00100 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.00251 * 0.02562 * 19 18 2 37 37 H 1.07998 * 119.99959 * 180.22974 * 20 19 18 38 38 H 1.08003 * 119.99735 * 179.83543 * 21 20 19 39 39 H 1.08004 * 120.00180 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00423 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1248 -0.6273 3.6672 7 1 2.0808 -1.7081 3.5330 8 6 3.5686 -0.2069 3.9498 9 6 1.2360 -0.2229 4.8450 10 6 -0.1602 -0.7445 4.6229 11 1 -0.3908 -1.3077 3.7307 12 6 -1.1438 -0.5018 5.5582 13 7 -0.8632 0.1845 6.6445 14 14 -2.8747 -1.1477 5.2826 15 1 -2.9295 -1.8824 3.9933 16 1 -3.2434 -2.0644 6.3912 17 1 -3.8275 -0.0093 5.2440 18 6 2.0323 -0.7103 -1.2305 19 6 1.7030 -2.0354 -1.4464 20 6 2.1606 -2.6859 -2.5772 21 6 2.9541 -2.0136 -3.4878 22 6 3.2877 -0.6901 -3.2692 23 6 2.8270 -0.0385 -2.1405 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 1.2054 28 1 1.6055 -1.7199 1.2950 29 1 0.6529 0.1792 2.4754 30 1 3.6126 0.8740 4.0838 31 1 3.9199 -0.7004 4.8558 32 1 4.2018 -0.4950 3.1107 33 1 1.6391 -0.6443 5.7658 34 1 1.2096 0.8639 4.9239 35 1 -1.5549 0.3550 7.3027 36 1 1.0855 -2.5614 -0.7335 37 1 1.9003 -3.7200 -2.7478 38 1 3.3138 -2.5226 -4.3699 39 1 3.9080 -0.1649 -3.9804 40 1 3.0880 0.9955 -1.9695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:37 Heat of formation + Delta-G solvation = -18.232346 kcal Electronic energy + Delta-G solvation = -17667.688443 eV Core-core repulsion = 15059.332393 eV Total energy + Delta-G solvation = -2608.356050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44305 -38.46312 -35.97969 -34.46607 -31.77928 -31.58793 -29.80936 -29.22795 -26.58884 -25.01838 -23.79824 -23.12250 -21.15480 -20.71138 -18.51872 -17.71316 -17.01881 -16.46431 -16.41380 -15.79501 -15.54309 -15.03851 -14.65637 -14.28186 -14.22347 -14.03615 -13.67592 -13.44288 -13.38833 -13.17671 -12.87022 -12.66593 -12.57754 -12.39123 -12.31445 -12.11134 -11.78447 -11.64894 -11.57582 -11.15603 -10.97760 -10.58451 -9.77525 -9.55470 -9.18641 -8.19777 -6.30294 0.49904 0.54678 1.38482 1.39548 1.51277 2.39702 2.91632 3.11941 3.42084 3.88152 3.96529 4.16443 4.20776 4.24013 4.32830 4.33935 4.52323 4.58116 4.66273 4.69933 4.70522 4.80119 4.88314 4.99948 5.02973 5.15568 5.18710 5.21003 5.25689 5.33190 5.33724 5.49718 5.55292 5.64777 5.66728 5.81931 5.83866 6.17470 6.20833 6.41062 6.67028 6.84852 7.38562 8.92154 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.004920 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.275210 B = 5689.135375 C = 6306.116022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.085 0.915 4 C 0.075 3.925 5 N -0.685 5.685 6 C 0.094 3.906 7 H 0.021 0.979 8 C -0.127 4.127 9 C 0.027 3.973 10 C -0.533 4.533 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.959 3.041 15 H -0.263 1.263 16 H -0.281 1.281 17 H -0.278 1.278 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.345 0.655 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.058 0.942 33 H -0.005 1.005 34 H -0.002 1.002 35 H 0.263 0.737 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -3.070 -19.699 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 H 0.103 0.897 4 C -0.055 4.055 5 N -0.318 5.318 6 C -0.016 4.016 7 H 0.039 0.961 8 C -0.185 4.185 9 C -0.010 4.010 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.784 3.216 15 H -0.187 1.187 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.081 4.081 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.165 0.835 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.161 -2.581 -19.569 20.997 hybrid contribution -1.599 -0.966 0.656 1.980 sum 5.561 -3.547 -18.913 20.031 Atomic orbital electron populations 1.21831 0.94480 1.01777 1.01991 1.20064 0.95848 0.99485 0.90781 0.89683 1.21965 0.99917 0.94081 0.89521 1.60644 1.20703 1.49375 1.01103 1.21433 0.95153 0.94520 0.90466 0.96086 1.21704 0.94995 1.01245 1.00559 1.19140 0.93690 0.95432 0.92747 1.21526 0.95755 1.34198 1.05643 0.92574 1.25872 1.03191 0.95304 0.94861 1.70101 1.34977 1.41125 1.10795 0.85491 0.79537 0.78195 0.78390 1.18713 1.20659 1.20365 1.19893 0.97819 0.94433 0.95941 1.21156 1.00795 0.94620 0.98275 1.21401 0.98107 1.00732 0.94251 1.21458 0.98415 0.95047 1.00007 1.21446 0.99940 0.95240 0.97501 1.21312 0.97891 1.00637 0.94698 0.92882 0.91496 0.93057 0.91547 0.96473 0.83487 0.93052 0.92904 0.92262 0.98684 0.98328 0.92811 0.86777 0.84617 0.83896 0.83891 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.78 71.98 0.63 -3.31 16 2 C -0.04 -1.17 2.77 -11.54 -0.03 -1.20 16 3 H 0.08 2.30 7.88 -2.39 -0.02 2.29 16 4 C 0.07 2.38 4.68 86.30 0.40 2.79 16 5 N -0.68 -26.49 6.31 -491.56 -3.10 -29.59 16 6 C 0.09 4.00 2.59 44.92 0.12 4.12 16 7 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 8 C -0.13 -4.61 9.42 71.98 0.68 -3.93 16 9 C 0.03 1.44 4.57 29.85 0.14 1.58 16 10 C -0.53 -29.71 8.12 25.60 0.21 -29.50 16 11 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 14 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 15 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 C -0.08 -1.97 4.78 -19.87 -0.09 -2.06 16 19 C -0.13 -3.11 8.76 22.27 0.20 -2.91 16 20 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.72 9.67 22.27 0.22 -2.50 16 24 H 0.05 1.63 6.68 -2.39 -0.02 1.61 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.41 7.40 -2.39 -0.02 1.39 16 27 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 28 H 0.02 0.57 7.47 -2.39 -0.02 0.56 16 29 H 0.34 14.49 5.46 -89.69 -0.49 14.00 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.87 7.45 -2.39 -0.02 1.85 16 33 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.11 2.78 7.16 -2.91 -0.02 2.76 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.13 2.44 7.95 -2.91 -0.02 2.42 16 Total: -1.00 -62.48 323.55 3.30 -59.17 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.50 Total: 22.94 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.59 Total: -42.51 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.82 Total: -85.59 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -62.48 3.30 -59.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.942 kcal (2) G-P(sol) polarization free energy of solvation -62.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds