Wall clock time and date at job start Mon Mar 30 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 C 1.50705 * 109.47234 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.03601 * 265.25818 * 4 3 2 6 6 C 1.38265 * 120.06962 * 180.27498 * 5 4 3 7 7 C 1.38305 * 120.15014 * 359.74544 * 6 5 4 8 8 C 1.38081 * 120.07885 * 359.97431 * 7 6 5 9 9 C 1.38891 * 120.03692 * 85.00129 * 4 3 2 10 10 N 1.39672 * 120.07261 * 0.02562 * 9 4 3 11 11 C 1.46504 * 120.00080 * 179.72379 * 10 9 4 12 12 H 1.09008 * 109.46847 * 34.99836 * 11 10 9 13 13 C 1.52994 * 109.47145 * 275.00176 * 11 10 9 14 14 C 1.52997 * 109.47349 * 154.99678 * 11 10 9 15 15 C 1.50701 * 109.47212 * 295.00023 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 H 1.08996 * 109.47442 * 300.00101 * 1 2 3 24 24 H 1.09004 * 109.47104 * 60.00309 * 1 2 3 25 25 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47442 * 239.99899 * 2 1 3 27 27 H 1.09004 * 109.47104 * 119.99691 * 2 1 3 28 28 H 1.09005 * 109.46764 * 59.99663 * 3 2 1 29 29 H 1.09004 * 109.47375 * 299.99846 * 3 2 1 30 30 H 1.07994 * 119.96546 * 0.02562 * 5 4 3 31 31 H 1.08007 * 119.92191 * 179.76471 * 6 5 4 32 32 H 1.08006 * 119.96170 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.03956 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00429 * 359.72122 * 10 9 4 35 35 H 1.09008 * 109.46970 * 299.99584 * 13 11 10 36 36 H 1.08996 * 109.47654 * 59.99346 * 13 11 10 37 37 H 1.09000 * 109.47476 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47153 * 175.00025 * 14 11 10 39 39 H 1.09001 * 109.46832 * 55.00216 * 14 11 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2379 1.5415 1.1926 6 6 5.6205 1.5473 1.1935 7 6 6.3164 1.4488 0.0024 8 6 5.6320 1.3437 -1.1923 9 6 4.2427 1.3376 -1.1969 10 7 3.5472 1.2324 -2.4035 11 6 4.2826 1.1279 -3.6663 12 1 5.1954 0.5531 -3.5086 13 6 4.6420 2.5290 -4.1646 14 6 3.4104 0.4242 -4.7078 15 6 3.1583 -0.9970 -4.2745 16 1 3.5779 -1.3617 -3.3486 17 6 2.3911 -1.8313 -5.0596 18 7 1.8798 -1.3870 -6.1868 19 14 2.0781 -3.5927 -4.5221 20 1 1.3816 -3.5937 -3.2105 21 1 1.2316 -4.2757 -5.5331 22 1 3.3727 -4.3092 -4.3956 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.6975 1.6186 2.1245 31 1 6.1583 1.6287 2.1266 32 1 7.3964 1.4540 0.0066 33 1 6.1760 1.2663 -2.1220 34 1 2.5772 1.2285 -2.4055 35 1 3.7293 3.1038 -4.3223 36 1 5.2634 3.0304 -3.4226 37 1 5.1896 2.4513 -5.1039 38 1 3.9217 0.4253 -5.6705 39 1 2.4600 0.9498 -4.8006 40 1 1.3403 -1.9741 -6.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:29 Heat of formation + Delta-G solvation = -6.284243 kcal Electronic energy + Delta-G solvation = -18226.443169 eV Core-core repulsion = 15618.605227 eV Total energy + Delta-G solvation = -2607.837941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38385 -36.13531 -34.78774 -32.87982 -31.23995 -30.52702 -27.84882 -27.41403 -25.92246 -23.28047 -22.20875 -21.57497 -20.30194 -19.50207 -16.97846 -16.31028 -15.82933 -15.03712 -14.57735 -14.25886 -13.94902 -13.58001 -13.44056 -13.30954 -12.86352 -12.49899 -12.06811 -11.88667 -11.81978 -11.61035 -11.54576 -11.37045 -10.91701 -10.84148 -10.77846 -10.60069 -10.43191 -10.32093 -10.15563 -9.60813 -9.36614 -9.07167 -8.42844 -8.32897 -6.70667 -6.05743 -4.07749 1.84224 2.12476 3.30421 3.34957 3.38365 4.17978 4.31804 4.42209 5.13403 5.18304 5.31081 5.39107 5.40636 5.47703 5.65345 5.71420 5.79253 5.90297 5.98511 6.01448 6.04110 6.06953 6.11209 6.24724 6.32298 6.42973 6.47369 6.51695 6.64553 6.66787 6.80700 6.86009 6.97513 7.05677 7.34397 7.51472 7.56746 7.91598 8.12010 8.33725 8.48741 8.98339 9.56909 11.05202 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.007659 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.406464 B = 3655.007030 C = 4417.268971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.066 4.066 4 C -0.173 4.173 5 C -0.071 4.071 6 C -0.200 4.200 7 C -0.076 4.076 8 C -0.205 4.205 9 C 0.240 3.760 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.067 0.933 13 C -0.164 4.164 14 C 0.016 3.984 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.030 0.970 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 6.350 11.511 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.104 4.104 4 C -0.178 4.178 5 C -0.089 4.089 6 C -0.220 4.220 7 C -0.095 4.095 8 C -0.228 4.228 9 C 0.132 3.868 10 N -0.340 5.340 11 C 0.041 3.959 12 H 0.085 0.915 13 C -0.223 4.223 14 C -0.021 4.021 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.236 0.764 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.686 6.272 11.120 13.047 hybrid contribution -0.527 -1.088 0.170 1.221 sum 2.159 5.184 11.290 12.610 Atomic orbital electron populations 1.21766 0.96188 1.01494 1.01326 1.21552 0.95224 0.96505 1.02834 1.20359 0.91268 0.97018 1.01743 1.19301 0.95152 1.11304 0.92026 1.20641 0.93965 0.98044 0.96279 1.20665 0.94084 1.09912 0.97383 1.20774 0.98812 0.97653 0.92269 1.20667 0.92468 1.11150 0.98536 1.17792 0.91361 0.91443 0.86215 1.45071 1.08423 1.77708 1.02776 1.21203 0.96334 0.94043 0.84314 0.91483 1.22291 1.01012 0.98514 1.00472 1.19377 0.94568 0.95048 0.93089 1.21131 1.31444 0.96157 1.06603 0.92518 1.24984 0.95847 0.98444 0.94947 1.69944 1.34588 1.36186 1.12750 0.86702 0.78269 0.85007 0.78331 1.20199 1.21356 1.20281 0.93334 0.92585 0.92939 0.90826 0.92384 0.91843 0.91823 0.87143 0.87425 0.87108 0.86230 0.76407 0.93036 0.93642 0.92353 0.95187 0.96214 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.15 0.37 -1.63 16 2 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 16 3 C -0.07 -0.95 4.78 -27.88 -0.13 -1.08 16 4 C -0.17 -2.74 5.15 -104.42 -0.54 -3.28 16 5 C -0.07 -1.02 9.68 -39.61 -0.38 -1.40 16 6 C -0.20 -2.82 10.04 -39.55 -0.40 -3.22 16 7 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 8 C -0.21 -3.43 8.85 -39.38 -0.35 -3.77 16 9 C 0.24 4.20 6.62 -83.79 -0.55 3.64 16 10 N -0.71 -13.30 4.86 -52.17 -0.25 -13.56 16 11 C 0.15 2.87 2.21 -67.93 -0.15 2.72 16 12 H 0.07 1.36 6.49 -51.92 -0.34 1.02 16 13 C -0.16 -2.77 9.43 37.15 0.35 -2.42 16 14 C 0.02 0.40 4.52 -27.88 -0.13 0.27 16 15 C -0.52 -13.87 8.84 -34.44 -0.30 -14.18 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.06 0.93 6.82 -51.93 -0.35 0.57 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.12 1.97 6.12 -52.49 -0.32 1.65 16 34 H 0.40 7.56 6.72 -40.82 -0.27 7.28 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -28.20 325.85 -9.22 -37.41 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.72 Total: 6.43 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.87 Total: -26.32 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.48 Total: -38.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.20 -9.22 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.131 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds