Wall clock time and date at job start Mon Mar 30 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 C 1.50705 * 109.47234 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.03601 * 265.25818 * 4 3 2 6 6 C 1.38265 * 120.06962 * 180.27498 * 5 4 3 7 7 C 1.38305 * 120.15014 * 359.74544 * 6 5 4 8 8 C 1.38081 * 120.07885 * 359.97431 * 7 6 5 9 9 C 1.38891 * 120.03692 * 85.00129 * 4 3 2 10 10 N 1.39672 * 120.07261 * 0.02562 * 9 4 3 11 11 C 1.46504 * 120.00080 * 179.72379 * 10 9 4 12 12 H 1.09008 * 109.46847 * 34.99836 * 11 10 9 13 13 C 1.52994 * 109.47145 * 275.00176 * 11 10 9 14 14 C 1.52997 * 109.47349 * 154.99678 * 11 10 9 15 15 C 1.50701 * 109.47212 * 295.00023 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 H 1.08996 * 109.47442 * 300.00101 * 1 2 3 24 24 H 1.09004 * 109.47104 * 60.00309 * 1 2 3 25 25 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47442 * 239.99899 * 2 1 3 27 27 H 1.09004 * 109.47104 * 119.99691 * 2 1 3 28 28 H 1.09005 * 109.46764 * 59.99663 * 3 2 1 29 29 H 1.09004 * 109.47375 * 299.99846 * 3 2 1 30 30 H 1.07994 * 119.96546 * 0.02562 * 5 4 3 31 31 H 1.08007 * 119.92191 * 179.76471 * 6 5 4 32 32 H 1.08006 * 119.96170 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.03956 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00429 * 359.72122 * 10 9 4 35 35 H 1.09008 * 109.46970 * 299.99584 * 13 11 10 36 36 H 1.08996 * 109.47654 * 59.99346 * 13 11 10 37 37 H 1.09000 * 109.47476 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47153 * 175.00025 * 14 11 10 39 39 H 1.09001 * 109.46832 * 55.00216 * 14 11 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2379 1.5415 1.1926 6 6 5.6205 1.5473 1.1935 7 6 6.3164 1.4488 0.0024 8 6 5.6320 1.3437 -1.1923 9 6 4.2427 1.3376 -1.1969 10 7 3.5472 1.2324 -2.4035 11 6 4.2826 1.1279 -3.6663 12 1 5.1954 0.5531 -3.5086 13 6 4.6420 2.5290 -4.1646 14 6 3.4104 0.4242 -4.7078 15 6 3.1583 -0.9970 -4.2745 16 1 3.5779 -1.3617 -3.3486 17 6 2.3911 -1.8313 -5.0596 18 7 1.8798 -1.3870 -6.1868 19 14 2.0781 -3.5927 -4.5221 20 1 1.3816 -3.5937 -3.2105 21 1 1.2316 -4.2757 -5.5331 22 1 3.3727 -4.3092 -4.3956 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.6975 1.6186 2.1245 31 1 6.1583 1.6287 2.1266 32 1 7.3964 1.4540 0.0066 33 1 6.1760 1.2663 -2.1220 34 1 2.5772 1.2285 -2.4055 35 1 3.7293 3.1038 -4.3223 36 1 5.2634 3.0304 -3.4226 37 1 5.1896 2.4513 -5.1039 38 1 3.9217 0.4253 -5.6705 39 1 2.4600 0.9498 -4.8006 40 1 1.3403 -1.9741 -6.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:29 Heat of formation + Delta-G solvation = -19.617434 kcal Electronic energy + Delta-G solvation = -18227.021339 eV Core-core repulsion = 15618.605227 eV Total energy + Delta-G solvation = -2608.416112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62594 -37.64395 -35.93965 -34.85534 -32.73653 -31.73175 -29.29154 -29.12149 -27.07247 -25.16613 -23.54600 -22.80875 -21.49576 -21.00674 -18.54169 -18.17302 -17.18249 -16.52080 -16.23692 -15.54948 -15.26837 -14.84605 -14.74653 -14.56119 -14.43971 -13.92222 -13.55704 -13.42001 -13.29714 -13.11095 -12.87177 -12.75147 -12.63683 -12.51360 -12.25851 -12.02257 -11.84745 -11.51576 -11.43327 -11.34674 -11.21826 -10.70425 -10.57753 -9.50154 -8.21321 -8.03197 -6.28830 0.66230 0.92485 1.36561 1.37269 1.45444 2.38288 2.76146 3.12034 3.14445 3.99252 4.03342 4.16344 4.28208 4.30551 4.38270 4.50095 4.55834 4.59599 4.62957 4.76501 4.85827 4.90397 4.94006 5.00912 5.07627 5.09705 5.18946 5.25758 5.31213 5.38011 5.43590 5.48734 5.54613 5.66307 5.79325 5.82058 5.88820 6.20841 6.25082 6.71280 6.84528 7.04902 7.39523 8.90158 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.007659 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.406464 B = 3655.007030 C = 4417.268971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.062 4.062 4 C -0.181 4.181 5 C -0.073 4.073 6 C -0.194 4.194 7 C -0.081 4.081 8 C -0.223 4.223 9 C 0.213 3.787 10 N -0.723 5.723 11 C 0.159 3.841 12 H 0.059 0.941 13 C -0.153 4.153 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.051 0.949 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.950 3.050 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.394 0.606 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.008 0.992 39 H -0.002 1.002 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 6.510 14.055 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.099 4.099 4 C -0.186 4.186 5 C -0.092 4.092 6 C -0.215 4.215 7 C -0.099 4.099 8 C -0.246 4.246 9 C 0.108 3.892 10 N -0.350 5.350 11 C 0.053 3.947 12 H 0.077 0.923 13 C -0.212 4.212 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.570 5.570 19 Si 0.776 3.224 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.230 0.770 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.017 0.983 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.204 6.438 13.694 15.468 hybrid contribution -0.631 -1.116 -0.537 1.390 sum 2.573 5.322 13.157 14.424 Atomic orbital electron populations 1.21749 0.94950 1.01658 1.02152 1.21477 0.96305 0.96659 1.01206 1.20347 0.90525 0.96591 1.02458 1.19565 0.95982 1.11032 0.92029 1.21007 0.94471 0.97021 0.96692 1.21079 0.94207 1.07890 0.98284 1.21096 1.00184 0.96845 0.91786 1.20813 0.92349 1.12055 0.99353 1.18056 0.91912 0.93067 0.86214 1.44889 1.07995 1.79207 1.02878 1.20868 0.94834 0.95057 0.83896 0.92293 1.22167 1.01249 0.96692 1.01081 1.19225 0.94149 0.94370 0.93606 1.21397 1.30949 0.97458 1.06142 0.93116 1.25759 0.95789 1.02427 0.95019 1.70055 1.35461 1.37607 1.13839 0.85729 0.78283 0.80341 0.78090 1.19625 1.20805 1.19741 0.90819 0.93422 0.93136 0.94682 0.91663 0.89331 0.92771 0.84419 0.84482 0.84716 0.86848 0.77045 0.93174 0.92102 0.91692 0.97352 0.98323 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.45 5.92 30.59 0.18 -3.27 16 3 C -0.06 -1.68 4.78 29.85 0.14 -1.54 16 4 C -0.18 -5.49 5.15 -19.73 -0.10 -5.59 16 5 C -0.07 -1.89 9.68 22.25 0.22 -1.68 16 6 C -0.19 -4.80 10.04 22.29 0.22 -4.58 16 7 C -0.08 -2.18 10.04 22.25 0.22 -1.96 16 8 C -0.22 -7.26 8.85 22.40 0.20 -7.06 16 9 C 0.21 7.41 6.62 38.21 0.25 7.66 16 10 N -0.72 -27.60 4.86 -318.96 -1.55 -29.15 16 11 C 0.16 6.43 2.21 44.99 0.10 6.53 16 12 H 0.06 2.46 6.49 -2.38 -0.02 2.44 16 13 C -0.15 -5.19 9.43 71.98 0.68 -4.51 16 14 C 0.02 1.21 4.52 29.85 0.13 1.34 16 15 C -0.52 -28.90 8.84 25.60 0.23 -28.67 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.46 5.46 84.66 0.46 0.92 16 18 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 19 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.95 8.05 -2.38 -0.02 1.93 16 29 H 0.05 1.57 6.82 -2.38 -0.02 1.55 16 30 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.11 3.73 6.12 -2.91 -0.02 3.71 16 34 H 0.39 15.54 6.72 -92.70 -0.62 14.92 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -61.06 325.85 4.78 -56.27 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.37 Total: 26.81 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 3.65 Total: -45.46 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.27 Total: -84.27 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.06 4.78 -56.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.657 kcal (2) G-P(sol) polarization free energy of solvation -61.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds