Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.50697 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.38291 * 119.92350 * 89.99816 * 4 3 2 6 6 C 1.38103 * 120.07038 * 179.97438 * 5 4 3 7 7 C 1.38909 * 119.93102 * 0.02562 * 6 5 4 8 8 N 1.39678 * 120.07635 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99483 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47719 * 35.00091 * 9 8 7 11 11 C 1.53005 * 109.47039 * 274.99377 * 9 8 7 12 12 C 1.53002 * 109.46657 * 154.99993 * 9 8 7 13 13 C 1.50706 * 109.47153 * 294.99192 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38915 * 119.84890 * 0.24401 * 7 6 5 22 22 C 1.38103 * 119.91991 * 359.50039 * 21 7 6 23 23 H 1.09006 * 109.47320 * 300.00050 * 1 2 3 24 24 H 1.09001 * 109.47306 * 60.00166 * 1 2 3 25 25 H 1.08999 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46845 * 239.99980 * 2 1 3 27 27 H 1.09000 * 109.46712 * 120.00305 * 2 1 3 28 28 H 1.09001 * 109.47299 * 60.00259 * 3 2 1 29 29 H 1.09001 * 109.46917 * 300.00072 * 3 2 1 30 30 H 1.07992 * 119.96437 * 359.95682 * 5 4 3 31 31 H 1.08004 * 120.03546 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00014 * 359.97438 * 8 7 6 33 33 H 1.09002 * 109.46592 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46870 * 300.00385 * 11 9 8 35 35 H 1.09001 * 109.46894 * 60.00541 * 11 9 8 36 36 H 1.09004 * 109.47178 * 174.99983 * 12 9 8 37 37 H 1.08993 * 109.47411 * 54.99665 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.07996 * 120.04153 * 179.72641 * 21 7 6 40 40 H 1.08002 * 119.96302 * 180.25122 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2373 1.4422 -1.1976 6 6 5.6183 1.4427 -1.2006 7 6 6.3140 1.4429 0.0017 8 7 7.7108 1.4429 0.0023 9 6 8.4427 1.4437 1.2714 10 1 7.8951 0.8547 2.0071 11 6 8.5887 2.8811 1.7750 12 6 9.8300 0.8339 1.0603 13 6 9.6883 -0.6183 0.6828 14 1 8.7069 -1.0616 0.6012 15 6 10.8114 -1.3807 0.4417 16 7 12.0063 -0.8394 0.5359 17 14 10.6357 -3.1804 -0.0269 18 1 11.9819 -3.7708 -0.2375 19 1 9.9402 -3.9102 1.0636 20 1 9.8453 -3.2909 -1.2792 21 6 5.6174 1.4375 1.2036 22 6 4.2364 1.4423 1.1994 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6959 1.4413 -2.1320 31 1 6.1569 1.4421 -2.1368 32 1 8.1961 1.4424 -0.8375 33 1 9.1337 2.8816 2.7190 34 1 9.1364 3.4699 1.0393 35 1 7.6004 3.3155 1.9253 36 1 10.4066 0.9150 1.9818 37 1 10.3442 1.3684 0.2617 38 1 12.0976 0.0952 0.7790 39 1 6.1551 1.4332 2.1402 40 1 3.6941 1.4422 2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -12.148143 kcal Electronic energy + Delta-G solvation = -17452.952810 eV Core-core repulsion = 14844.860591 eV Total energy + Delta-G solvation = -2608.092219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27906 -36.74570 -34.71789 -33.01891 -31.31301 -30.43793 -28.75657 -27.09304 -25.28976 -23.07318 -22.64346 -21.82197 -20.57955 -19.70488 -17.17760 -16.66871 -15.66928 -15.16353 -14.79626 -14.05468 -13.83131 -13.65704 -13.56680 -13.34157 -13.06639 -12.79311 -12.58520 -12.23214 -12.02532 -11.76152 -11.51931 -11.31708 -11.14253 -10.96822 -10.76989 -10.72164 -10.57715 -10.34426 -10.13779 -9.72148 -9.41331 -8.58200 -8.54801 -8.38945 -6.75240 -6.40098 -4.09808 1.82568 2.01436 3.42878 3.43759 3.62752 4.09879 4.24625 4.51625 4.94094 4.95378 5.11552 5.22513 5.35726 5.37304 5.50237 5.54315 5.66497 5.75621 5.79004 5.81993 5.88747 5.91140 5.95120 5.96501 6.17422 6.22301 6.29913 6.34621 6.40132 6.51613 6.66811 6.77802 6.82449 7.05807 7.16461 7.23164 7.37908 8.01535 8.14631 8.40340 8.43288 8.83795 9.61541 11.00146 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.004863 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.665509 B = 5756.015201 C = 6508.413942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.165 4.165 5 C -0.067 4.067 6 C -0.207 4.207 7 C 0.233 3.767 8 N -0.717 5.717 9 C 0.155 3.845 10 H 0.068 0.932 11 C -0.165 4.165 12 C 0.002 3.998 13 C -0.596 4.596 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.067 2.933 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.204 4.204 22 C -0.067 4.067 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.399 0.601 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.011 0.989 38 H 0.268 0.732 39 H 0.119 0.881 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 5.406 -0.795 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.103 4.103 4 C -0.168 4.168 5 C -0.086 4.086 6 C -0.230 4.230 7 C 0.126 3.874 8 N -0.341 5.341 9 C 0.049 3.951 10 H 0.086 0.914 11 C -0.224 4.224 12 C -0.035 4.035 13 C -0.635 4.635 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.550 5.550 17 Si 0.895 3.105 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.227 4.227 22 C -0.086 4.086 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.234 0.766 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.514 4.039 -0.986 17.029 hybrid contribution -0.578 1.328 0.088 1.451 sum -17.092 5.367 -0.898 17.937 Atomic orbital electron populations 1.21801 0.96290 1.01357 1.01518 1.21548 0.94957 0.96956 1.02357 1.20404 0.91727 0.96437 1.01726 1.19426 0.94826 1.09393 0.93128 1.20607 0.93236 0.97801 0.96926 1.20532 0.94272 1.11977 0.96244 1.17971 0.84422 0.91413 0.93610 1.44940 1.01629 1.78680 1.08888 1.21009 0.95207 0.93771 0.85064 0.91383 1.22312 1.00810 0.98356 1.00925 1.19509 0.90455 0.96751 0.96788 1.21990 0.95055 0.95116 1.51290 0.93074 1.25819 0.92511 1.05901 0.94600 1.70804 1.23817 1.15415 1.44915 0.83562 0.75700 0.74729 0.76467 1.20808 1.21455 1.21493 1.20657 0.94095 1.11204 0.96719 1.20660 0.93358 0.97646 0.96928 0.92928 0.92937 0.92977 0.92023 0.91997 0.91961 0.91975 0.87047 0.86747 0.76646 0.92378 0.93038 0.93410 0.96149 0.97091 0.92199 0.86315 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.07 -0.71 5.34 -27.89 -0.15 -0.86 16 4 C -0.17 -2.27 5.14 -104.59 -0.54 -2.81 16 5 C -0.07 -0.96 9.69 -39.61 -0.38 -1.34 16 6 C -0.21 -3.33 9.90 -39.38 -0.39 -3.72 16 7 C 0.23 4.13 6.64 -83.78 -0.56 3.58 16 8 N -0.72 -13.65 4.96 -52.16 -0.26 -13.91 16 9 C 0.15 3.09 2.22 -67.93 -0.15 2.94 16 10 H 0.07 1.42 6.47 -51.93 -0.34 1.08 16 11 C -0.17 -2.80 9.44 37.16 0.35 -2.45 16 12 C 0.00 0.05 3.83 -27.88 -0.11 -0.05 16 13 C -0.60 -16.49 8.84 -34.44 -0.30 -16.80 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 16 N -0.91 -27.57 13.65 55.43 0.76 -26.82 16 17 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.20 -3.41 8.87 -39.38 -0.35 -3.76 16 22 C -0.07 -0.98 9.69 -39.61 -0.38 -1.37 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.40 7.64 8.62 -40.82 -0.35 7.29 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 36 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 37 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 38 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 39 H 0.12 1.98 6.15 -52.49 -0.32 1.65 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -29.44 328.01 -9.30 -38.74 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.81 Total: 5.31 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.85 Total: -28.60 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.50 Total: -40.73 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.44 -9.30 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds