Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.50697 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.38291 * 119.92350 * 89.99816 * 4 3 2 6 6 C 1.38103 * 120.07038 * 179.97438 * 5 4 3 7 7 C 1.38909 * 119.93102 * 0.02562 * 6 5 4 8 8 N 1.39678 * 120.07635 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99483 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47719 * 35.00091 * 9 8 7 11 11 C 1.53005 * 109.47039 * 274.99377 * 9 8 7 12 12 C 1.53002 * 109.46657 * 154.99993 * 9 8 7 13 13 C 1.50706 * 109.47153 * 294.99192 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38915 * 119.84890 * 0.24401 * 7 6 5 22 22 C 1.38103 * 119.91991 * 359.50039 * 21 7 6 23 23 H 1.09006 * 109.47320 * 300.00050 * 1 2 3 24 24 H 1.09001 * 109.47306 * 60.00166 * 1 2 3 25 25 H 1.08999 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46845 * 239.99980 * 2 1 3 27 27 H 1.09000 * 109.46712 * 120.00305 * 2 1 3 28 28 H 1.09001 * 109.47299 * 60.00259 * 3 2 1 29 29 H 1.09001 * 109.46917 * 300.00072 * 3 2 1 30 30 H 1.07992 * 119.96437 * 359.95682 * 5 4 3 31 31 H 1.08004 * 120.03546 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00014 * 359.97438 * 8 7 6 33 33 H 1.09002 * 109.46592 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46870 * 300.00385 * 11 9 8 35 35 H 1.09001 * 109.46894 * 60.00541 * 11 9 8 36 36 H 1.09004 * 109.47178 * 174.99983 * 12 9 8 37 37 H 1.08993 * 109.47411 * 54.99665 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.07996 * 120.04153 * 179.72641 * 21 7 6 40 40 H 1.08002 * 119.96302 * 180.25122 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2373 1.4422 -1.1976 6 6 5.6183 1.4427 -1.2006 7 6 6.3140 1.4429 0.0017 8 7 7.7108 1.4429 0.0023 9 6 8.4427 1.4437 1.2714 10 1 7.8951 0.8547 2.0071 11 6 8.5887 2.8811 1.7750 12 6 9.8300 0.8339 1.0603 13 6 9.6883 -0.6183 0.6828 14 1 8.7069 -1.0616 0.6012 15 6 10.8114 -1.3807 0.4417 16 7 12.0063 -0.8394 0.5359 17 14 10.6357 -3.1804 -0.0269 18 1 11.9819 -3.7708 -0.2375 19 1 9.9402 -3.9102 1.0636 20 1 9.8453 -3.2909 -1.2792 21 6 5.6174 1.4375 1.2036 22 6 4.2364 1.4423 1.1994 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6959 1.4413 -2.1320 31 1 6.1569 1.4421 -2.1368 32 1 8.1961 1.4424 -0.8375 33 1 9.1337 2.8816 2.7190 34 1 9.1364 3.4699 1.0393 35 1 7.6004 3.3155 1.9253 36 1 10.4066 0.9150 1.9818 37 1 10.3442 1.3684 0.2617 38 1 12.0976 0.0952 0.7790 39 1 6.1551 1.4332 2.1402 40 1 3.6941 1.4422 2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -26.640154 kcal Electronic energy + Delta-G solvation = -17453.581231 eV Core-core repulsion = 14844.860591 eV Total energy + Delta-G solvation = -2608.720640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51797 -38.15875 -35.93787 -34.81686 -32.70183 -31.65430 -29.90474 -28.95911 -26.36062 -25.05414 -23.93863 -22.81706 -21.77298 -21.10150 -19.05075 -18.24792 -16.98163 -16.26361 -15.90169 -15.68942 -15.40228 -15.22704 -14.75979 -14.49714 -14.31367 -14.03523 -13.95985 -13.57880 -13.24920 -13.10771 -13.06259 -12.74548 -12.59554 -12.41728 -12.02902 -11.98462 -11.77687 -11.66258 -11.53513 -11.36476 -10.88010 -10.58290 -10.49455 -9.74740 -8.68436 -8.08982 -6.38149 0.62018 0.80746 1.49369 1.56258 1.76153 2.52973 2.65750 3.04177 3.16075 3.96112 4.05012 4.08417 4.21665 4.25814 4.35891 4.37978 4.43660 4.60523 4.62915 4.71994 4.76626 4.89509 4.91171 4.97468 5.01788 5.06037 5.10050 5.18462 5.24878 5.29126 5.35507 5.38339 5.53139 5.57182 5.63898 5.92057 5.97813 6.14722 6.18066 6.56248 6.62519 6.95648 7.40842 8.72598 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.004863 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.665509 B = 5756.015201 C = 6508.413942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.063 4.063 4 C -0.157 4.157 5 C -0.070 4.070 6 C -0.216 4.216 7 C 0.206 3.794 8 N -0.728 5.728 9 C 0.166 3.834 10 H 0.058 0.942 11 C -0.154 4.154 12 C 0.006 3.994 13 C -0.601 4.601 14 H 0.043 0.957 15 C -0.036 4.036 16 N -0.939 5.939 17 Si 1.112 2.888 18 H -0.283 1.283 19 H -0.273 1.273 20 H -0.274 1.274 21 C -0.218 4.218 22 C -0.072 4.072 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.004 0.996 37 H -0.004 1.004 38 H 0.256 0.744 39 H 0.113 0.887 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 5.280 -1.101 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.100 4.100 4 C -0.160 4.160 5 C -0.088 4.088 6 C -0.239 4.239 7 C 0.101 3.899 8 N -0.354 5.354 9 C 0.061 3.939 10 H 0.076 0.924 11 C -0.213 4.213 12 C -0.031 4.031 13 C -0.639 4.639 14 H 0.062 0.938 15 C -0.234 4.234 16 N -0.577 5.577 17 Si 0.934 3.066 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.199 1.199 21 C -0.241 4.241 22 C -0.090 4.090 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.014 0.986 38 H 0.066 0.934 39 H 0.131 0.869 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.227 3.934 -1.284 19.667 hybrid contribution 0.134 1.395 0.177 1.413 sum -19.093 5.329 -1.106 19.854 Atomic orbital electron populations 1.21769 0.94680 1.01909 1.02276 1.21519 0.96369 0.96277 1.01571 1.20459 0.89401 0.97111 1.03061 1.19837 0.96605 1.06982 0.92542 1.20945 0.92608 0.96871 0.98395 1.20738 0.95256 1.11943 0.95935 1.18198 0.83721 0.93226 0.94735 1.44794 1.02326 1.80320 1.07935 1.20711 0.92435 0.95144 0.85616 0.92417 1.22183 1.01799 0.96211 1.01069 1.19409 0.92957 0.95528 0.95218 1.22286 0.94538 0.96687 1.50382 0.93843 1.27220 0.92157 1.09764 0.94214 1.70925 1.24767 1.14984 1.46979 0.82979 0.75972 0.70395 0.77230 1.20798 1.19809 1.19932 1.20777 0.95165 1.11940 0.96204 1.20953 0.92638 0.96997 0.98434 0.92236 0.92126 0.92605 0.92746 0.92933 0.90761 0.90567 0.84513 0.86276 0.77220 0.91614 0.93019 0.91906 0.97746 0.98553 0.93403 0.86904 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.14 5.92 30.59 0.18 -1.95 16 3 C -0.06 -1.16 5.34 29.85 0.16 -1.00 16 4 C -0.16 -3.92 5.14 -19.84 -0.10 -4.03 16 5 C -0.07 -1.83 9.69 22.25 0.22 -1.62 16 6 C -0.22 -6.73 9.90 22.40 0.22 -6.51 16 7 C 0.21 7.26 6.64 38.21 0.25 7.52 16 8 N -0.73 -28.15 4.96 -318.95 -1.58 -29.74 16 9 C 0.17 6.78 2.22 44.99 0.10 6.88 16 10 H 0.06 2.45 6.47 -2.39 -0.02 2.44 16 11 C -0.15 -5.19 9.44 71.98 0.68 -4.51 16 12 C 0.01 0.32 3.83 29.85 0.11 0.43 16 13 C -0.60 -33.86 8.84 25.60 0.23 -33.63 16 14 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 15 C -0.04 -2.08 5.46 84.65 0.46 -1.61 16 16 N -0.94 -57.82 13.65 21.45 0.29 -57.53 16 17 Si 1.11 51.12 29.90 68.60 2.05 53.17 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C -0.22 -7.15 8.87 22.40 0.20 -6.95 16 22 C -0.07 -1.96 9.69 22.25 0.22 -1.75 16 23 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 29 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.12 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.39 15.53 8.62 -92.71 -0.80 14.74 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 36 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 37 H 0.00 -0.20 8.00 -2.39 -0.02 -0.22 16 38 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 39 H 0.11 3.75 6.15 -2.91 -0.02 3.73 16 40 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -63.22 328.01 4.70 -58.52 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.29 Total: 25.65 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 3.64 Total: -50.07 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.29 Total: -87.27 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -63.22 4.70 -58.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.880 kcal (2) G-P(sol) polarization free energy of solvation -63.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds