Wall clock time and date at job start Mon Mar 30 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47212 * 2 1 4 4 C 1.50699 * 109.47063 * 120.00221 * 2 1 3 5 5 C 1.38306 * 119.96204 * 300.27345 * 4 2 1 6 6 C 1.38265 * 120.14784 * 180.27606 * 5 4 2 7 7 C 1.38133 * 120.07407 * 359.44555 * 6 5 4 8 8 C 1.38886 * 119.92263 * 0.28038 * 7 6 5 9 9 N 1.39676 * 120.07123 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00296 * 359.97438 * 9 8 7 11 11 H 1.09000 * 109.46810 * 325.00593 * 10 9 8 12 12 C 1.53003 * 109.46808 * 85.00263 * 10 9 8 13 13 C 1.52993 * 109.47017 * 205.00139 * 10 9 8 14 14 C 1.50700 * 109.47391 * 65.00314 * 13 10 9 15 15 H 1.07999 * 119.99569 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00302 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99882 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00106 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47079 * 89.99956 * 18 16 14 20 20 H 1.48498 * 109.47083 * 210.00280 * 18 16 14 21 21 H 1.48499 * 109.47035 * 330.00476 * 18 16 14 22 22 C 1.38089 * 119.96065 * 119.99674 * 4 2 1 23 23 H 1.09004 * 109.46737 * 299.99933 * 1 2 3 24 24 H 1.09001 * 109.46686 * 59.99742 * 1 2 3 25 25 H 1.08992 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46737 * 240.00067 * 2 1 3 27 27 H 1.08995 * 109.46623 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47283 * 300.00455 * 3 2 1 29 29 H 1.09004 * 109.46757 * 60.00086 * 3 2 1 30 30 H 1.08001 * 119.92853 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.96572 * 179.72711 * 6 5 4 32 32 H 1.08000 * 120.03792 * 180.29780 * 7 6 5 33 33 H 0.97003 * 119.99615 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47046 * 60.00007 * 12 10 9 35 35 H 1.08993 * 109.46956 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.47040 * 299.99810 * 12 10 9 37 37 H 1.09006 * 109.46909 * 185.00153 * 13 10 9 38 38 H 1.08995 * 109.47723 * 304.99658 * 13 10 9 39 39 H 0.97000 * 119.99782 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.03755 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6931 -0.2406 2.4862 6 6 2.1565 -0.8861 3.6177 7 6 2.9509 -2.0097 3.4972 8 6 3.2888 -2.4875 2.2377 9 7 4.0914 -3.6237 2.1122 10 6 4.5783 -4.3125 3.3100 11 1 4.7833 -3.5811 4.0916 12 6 3.5148 -5.2976 3.7995 13 6 5.8623 -5.0736 2.9741 14 6 6.9469 -4.0929 2.6097 15 1 6.7409 -3.0327 2.6166 16 6 8.2023 -4.5489 2.2675 17 7 8.4531 -5.8399 2.2586 18 14 9.5465 -3.3332 1.8152 19 1 10.2933 -2.9433 3.0381 20 1 10.4783 -3.9637 0.8459 21 1 8.9364 -2.1262 1.2019 22 6 2.8262 -1.8332 1.1028 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.0681 0.6348 2.5833 31 1 1.8934 -0.5141 4.5969 32 1 3.3086 -2.5163 4.3815 33 1 4.3271 -3.9562 1.2319 34 1 3.3097 -6.0290 3.0178 35 1 3.8768 -5.8097 4.6909 36 1 2.6000 -4.7553 4.0388 37 1 6.1759 -5.6570 3.8398 38 1 5.6791 -5.7419 2.1327 39 1 9.3361 -6.1608 2.0175 40 1 3.0873 -2.2019 0.1218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:10 Heat of formation + Delta-G solvation = -19.552923 kcal Electronic energy + Delta-G solvation = -17703.502471 eV Core-core repulsion = 15095.089156 eV Total energy + Delta-G solvation = -2608.413314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57083 -38.17586 -35.94719 -34.68350 -32.78635 -30.75464 -29.27022 -28.80281 -27.91162 -25.19704 -24.14928 -23.16115 -21.68998 -20.25429 -18.53532 -17.92590 -17.09747 -16.53704 -16.33684 -15.88239 -15.05861 -14.87413 -14.49849 -14.39500 -14.26296 -14.10682 -13.64618 -13.41494 -13.31877 -13.06908 -12.90833 -12.70857 -12.65496 -12.45551 -12.29146 -12.18771 -11.96872 -11.48594 -11.35728 -11.34202 -11.24754 -10.67159 -10.58639 -9.52338 -8.22534 -8.09501 -6.30427 0.64811 0.89788 1.36485 1.37124 1.48002 2.38209 2.72704 3.10320 3.13192 3.85099 4.03476 4.19039 4.25882 4.40124 4.42377 4.49683 4.55350 4.61467 4.69624 4.76965 4.85812 4.87832 4.96835 5.05009 5.06151 5.14119 5.17347 5.25540 5.33022 5.40855 5.42731 5.45975 5.51898 5.63483 5.77618 5.80196 5.92755 6.18844 6.23338 6.69390 6.83525 7.02525 7.38302 8.89283 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.005441 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.878471 B = 5144.426128 C = 5860.553160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.031 4.031 5 C -0.190 4.190 6 C -0.071 4.071 7 C -0.228 4.228 8 C 0.216 3.784 9 N -0.727 5.727 10 C 0.160 3.840 11 H 0.060 0.940 12 C -0.153 4.153 13 C 0.022 3.978 14 C -0.524 4.524 15 H 0.051 0.949 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.221 4.221 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.394 0.606 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.009 0.991 38 H 0.000 1.000 39 H 0.263 0.737 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.472 11.518 -1.814 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.032 4.032 5 C -0.210 4.210 6 C -0.090 4.090 7 C -0.251 4.251 8 C 0.110 3.890 9 N -0.353 5.353 10 C 0.055 3.945 11 H 0.078 0.922 12 C -0.212 4.212 13 C -0.015 4.015 14 C -0.563 4.563 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.244 4.244 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.228 0.772 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.260 11.283 -1.657 19.050 hybrid contribution 1.400 -0.231 -0.509 1.507 sum -13.860 11.053 -2.167 17.859 Atomic orbital electron populations 1.21798 0.93105 1.01784 1.02711 1.20178 0.96866 0.96253 0.94386 1.21814 1.00486 0.94593 1.02751 1.19793 0.94358 0.93294 0.95708 1.20833 1.05802 1.02943 0.91421 1.21104 0.94880 0.93545 0.99461 1.20799 1.07046 1.01789 0.95434 1.18166 0.89532 0.86772 0.94530 1.44859 1.53707 1.28320 1.08367 1.20867 0.93175 0.93446 0.87039 0.92240 1.22166 0.98752 0.99168 1.01092 1.19242 0.91683 0.94822 0.95752 1.21458 0.96187 0.93319 1.45299 0.93107 1.25806 1.01040 0.96700 0.95669 1.70067 1.22668 1.14365 1.49932 0.85593 0.79007 0.79082 0.78228 1.19905 1.20699 1.19629 1.20605 1.06832 1.00378 0.96628 0.91848 0.91053 0.93366 0.91114 0.93911 0.90943 0.91833 0.84781 0.84412 0.86747 0.77198 0.93139 0.91610 0.92107 0.97278 0.98160 0.92823 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.00 71.98 0.65 -1.68 16 2 C -0.06 -1.22 3.09 -11.54 -0.04 -1.26 16 3 C -0.14 -2.56 9.01 71.98 0.65 -1.91 16 4 C -0.03 -0.83 4.78 -19.88 -0.10 -0.92 16 5 C -0.19 -4.80 8.71 22.29 0.19 -4.61 16 6 C -0.07 -1.94 10.04 22.25 0.22 -1.72 16 7 C -0.23 -7.47 8.85 22.40 0.20 -7.27 16 8 C 0.22 7.65 6.64 38.21 0.25 7.90 16 9 N -0.73 -28.15 4.96 -318.96 -1.58 -29.73 16 10 C 0.16 6.51 2.21 44.99 0.10 6.61 16 11 H 0.06 2.49 6.48 -2.39 -0.02 2.47 16 12 C -0.15 -5.20 9.43 71.98 0.68 -4.52 16 13 C 0.02 1.14 4.52 29.85 0.13 1.27 16 14 C -0.52 -29.28 8.84 25.60 0.23 -29.05 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 18 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.22 -7.10 9.52 22.40 0.21 -6.89 16 23 H 0.06 1.00 7.37 -2.38 -0.02 0.98 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.51 7.87 -2.38 -0.02 1.50 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.08 7.40 -2.38 -0.02 1.06 16 30 H 0.13 2.68 7.09 -2.91 -0.02 2.66 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.11 3.77 6.12 -2.91 -0.02 3.75 16 33 H 0.39 15.57 8.61 -92.71 -0.80 14.77 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.11 3.51 7.94 -2.91 -0.02 3.49 16 Total: -1.00 -61.66 325.04 4.78 -56.88 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.20 Total: 24.65 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 3.85 Total: -43.25 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -1.30 Total: -85.06 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.66 4.78 -56.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.328 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds