Wall clock time and date at job start Mon Mar 30 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.38233 * 120.00109 * 269.72529 * 3 2 1 5 5 C 1.38238 * 119.99754 * 179.76611 * 4 3 2 6 6 C 1.38234 * 120.00016 * 0.50732 * 5 4 3 7 7 C 1.50696 * 120.00209 * 179.72225 * 6 5 4 8 8 N 1.46898 * 109.47368 * 270.02607 * 7 6 5 9 9 C 1.46899 * 110.99953 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47279 * 35.00225 * 9 8 7 11 11 C 1.52999 * 109.47057 * 274.99854 * 9 8 7 12 12 C 1.53004 * 109.47139 * 154.99878 * 9 8 7 13 13 C 1.50703 * 109.47024 * 295.00237 * 12 9 8 14 14 H 1.07997 * 119.99906 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99715 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47195 * 60.00333 * 17 15 13 19 19 H 1.48497 * 109.47033 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47356 * 300.00243 * 17 15 13 21 21 C 1.38238 * 120.00063 * 359.74632 * 6 5 4 22 22 C 1.38235 * 120.00108 * 0.02562 * 21 6 5 23 23 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 27 27 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 28 28 H 1.08004 * 119.99934 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.99924 * 180.23621 * 5 4 3 30 30 H 1.09003 * 109.47159 * 30.02324 * 7 6 5 31 31 H 1.08997 * 109.47406 * 150.02394 * 7 6 5 32 32 H 1.00900 * 110.99830 * 303.95346 * 8 7 6 33 33 H 1.09006 * 109.46696 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47191 * 300.00007 * 11 9 8 35 35 H 1.08996 * 109.47353 * 59.99942 * 11 9 8 36 36 H 1.09000 * 109.46992 * 54.99800 * 12 9 8 37 37 H 1.09001 * 109.47467 * 174.99727 * 12 9 8 38 38 H 0.97003 * 119.99842 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.00578 * 179.97438 * 21 6 5 40 40 H 1.07999 * 120.00165 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3756 -1.1971 6 6 2.9547 4.0272 0.0001 7 6 3.4579 5.4476 0.0002 8 7 4.9269 5.4467 0.0002 9 6 5.4542 6.8178 -0.0003 10 1 4.7990 7.4593 0.5889 11 6 5.5199 7.3384 -1.4375 12 6 6.8575 6.8248 0.6093 13 6 6.7764 6.4293 2.0613 14 1 5.8197 6.1967 2.5049 15 6 7.9237 6.3645 2.8232 16 7 9.0888 6.6482 2.2830 17 14 7.8231 5.8750 4.6231 18 1 7.2415 4.5131 4.7339 19 1 9.1851 5.8816 5.2147 20 1 6.9627 6.8415 5.3517 21 6 2.7239 3.3756 1.1973 22 6 2.2632 2.0723 1.1973 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.0920 1.5601 -2.1324 29 1 2.9049 3.8845 -2.1323 30 1 3.0950 5.9618 -0.8898 31 1 3.0950 5.9616 0.8902 32 1 5.2882 4.9203 0.7815 33 1 5.9116 8.3556 -1.4379 34 1 6.1752 6.6969 -2.0268 35 1 4.5202 7.3334 -1.8718 36 1 7.4895 6.1159 0.0744 37 1 7.2840 7.8246 0.5283 38 1 9.8959 6.6030 2.8192 39 1 2.9042 3.8845 2.1326 40 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:00 Heat of formation + Delta-G solvation = -6.262425 kcal Electronic energy + Delta-G solvation = -17392.704150 eV Core-core repulsion = 14784.867155 eV Total energy + Delta-G solvation = -2607.836995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38722 -36.65828 -34.40258 -32.67521 -31.08793 -30.74146 -28.53688 -27.37983 -25.01269 -23.13581 -22.54305 -22.25707 -20.29897 -19.39545 -16.35001 -16.14547 -15.63117 -15.17056 -14.68484 -14.57610 -14.15859 -13.78880 -13.64668 -13.20807 -13.06337 -12.75770 -12.15327 -12.05002 -11.76075 -11.72327 -11.46068 -11.24106 -11.20775 -11.08527 -10.76532 -10.67777 -10.55293 -10.45275 -10.18143 -9.25086 -9.07617 -8.72664 -8.41782 -8.33540 -7.61790 -6.02125 -4.05344 1.50387 1.60258 3.31057 3.36100 3.37734 3.90329 4.43451 4.73753 4.83429 5.02221 5.12524 5.16704 5.24953 5.28315 5.40444 5.45875 5.55662 5.65154 5.76839 5.81050 5.92359 5.96403 6.00242 6.04182 6.23234 6.26357 6.27751 6.32423 6.54619 6.60120 6.74076 6.88172 6.94982 6.96549 7.19536 7.53321 7.63993 7.97233 8.06651 8.28868 8.38027 9.00417 9.58708 11.08797 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.005062 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.669401 B = 5530.500874 C = 6504.976639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.073 4.073 7 C 0.095 3.905 8 N -0.677 5.677 9 C 0.086 3.914 10 H 0.029 0.971 11 C -0.135 4.135 12 C 0.021 3.979 13 C -0.525 4.525 14 H 0.051 0.949 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.110 4.110 22 C -0.119 4.119 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.356 0.644 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.026 0.974 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 -9.229 -5.367 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.074 4.074 7 C -0.034 4.034 8 N -0.311 5.311 9 C -0.023 4.023 10 H 0.047 0.953 11 C -0.193 4.193 12 C -0.016 4.016 13 C -0.563 4.563 14 H 0.069 0.931 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.129 4.129 22 C -0.137 4.137 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.177 0.823 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.084 -9.268 -6.002 18.693 hybrid contribution -0.075 0.052 1.995 1.997 sum -15.159 -9.216 -4.006 18.187 Atomic orbital electron populations 1.21743 0.95018 1.01363 1.02161 1.20511 0.95923 0.93033 1.02608 1.19812 1.00050 0.96002 0.93327 1.20953 1.00828 0.95010 0.97193 1.20991 0.98373 0.94454 0.97759 1.19929 0.97926 0.96538 0.93000 1.20911 0.90607 0.91513 1.00364 1.60623 1.03773 1.15430 1.51286 1.21640 0.98839 0.87446 0.94357 0.95290 1.21794 0.99969 0.99911 0.97613 1.19275 0.89779 0.97701 0.94891 1.21131 0.92858 1.46727 0.95571 0.93120 1.24980 0.95476 0.95291 0.98288 1.69951 0.98006 1.48697 1.36338 0.86706 0.77116 0.79113 0.85363 1.20192 1.21236 1.20360 1.21104 0.99026 0.94842 0.97882 1.20940 1.00583 0.94888 0.97296 0.92625 0.92642 0.92672 0.91260 0.91248 0.86567 0.86131 0.91129 0.95074 0.82331 0.93311 0.92641 0.94528 0.95589 0.96029 0.92884 0.86215 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.79 6.07 -27.88 -0.17 -0.96 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 5 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 6 C -0.07 -1.13 5.39 -104.63 -0.56 -1.69 16 7 C 0.10 1.57 5.61 -4.98 -0.03 1.54 16 8 N -0.68 -13.32 6.30 -108.00 -0.68 -14.00 16 9 C 0.09 1.81 2.59 -67.71 -0.18 1.64 16 10 H 0.03 0.62 7.80 -51.93 -0.41 0.22 16 11 C -0.13 -2.45 9.41 37.16 0.35 -2.10 16 12 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 13 C -0.52 -14.49 8.12 -34.44 -0.28 -14.77 16 14 H 0.05 1.36 7.49 -52.49 -0.39 0.96 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C -0.11 -1.62 9.70 -39.58 -0.38 -2.01 16 22 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.07 1.09 7.38 -51.93 -0.38 0.70 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 32 H 0.36 7.71 7.20 -39.29 -0.28 7.42 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -29.33 330.53 -9.67 -39.01 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.89 Total: 3.84 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.80 Total: -24.41 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.06 Total: -39.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.33 -9.67 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds