Wall clock time and date at job start Mon Mar 30 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.38233 * 120.00109 * 269.72529 * 3 2 1 5 5 C 1.38238 * 119.99754 * 179.76611 * 4 3 2 6 6 C 1.38234 * 120.00016 * 0.50732 * 5 4 3 7 7 C 1.50696 * 120.00209 * 179.72225 * 6 5 4 8 8 N 1.46898 * 109.47368 * 270.02607 * 7 6 5 9 9 C 1.46899 * 110.99953 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47279 * 35.00225 * 9 8 7 11 11 C 1.52999 * 109.47057 * 274.99854 * 9 8 7 12 12 C 1.53004 * 109.47139 * 154.99878 * 9 8 7 13 13 C 1.50703 * 109.47024 * 295.00237 * 12 9 8 14 14 H 1.07997 * 119.99906 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99715 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47195 * 60.00333 * 17 15 13 19 19 H 1.48497 * 109.47033 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47356 * 300.00243 * 17 15 13 21 21 C 1.38238 * 120.00063 * 359.74632 * 6 5 4 22 22 C 1.38235 * 120.00108 * 0.02562 * 21 6 5 23 23 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 27 27 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 28 28 H 1.08004 * 119.99934 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.99924 * 180.23621 * 5 4 3 30 30 H 1.09003 * 109.47159 * 30.02324 * 7 6 5 31 31 H 1.08997 * 109.47406 * 150.02394 * 7 6 5 32 32 H 1.00900 * 110.99830 * 303.95346 * 8 7 6 33 33 H 1.09006 * 109.46696 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47191 * 300.00007 * 11 9 8 35 35 H 1.08996 * 109.47353 * 59.99942 * 11 9 8 36 36 H 1.09000 * 109.46992 * 54.99800 * 12 9 8 37 37 H 1.09001 * 109.47467 * 174.99727 * 12 9 8 38 38 H 0.97003 * 119.99842 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.00578 * 179.97438 * 21 6 5 40 40 H 1.07999 * 120.00165 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3756 -1.1971 6 6 2.9547 4.0272 0.0001 7 6 3.4579 5.4476 0.0002 8 7 4.9269 5.4467 0.0002 9 6 5.4542 6.8178 -0.0003 10 1 4.7990 7.4593 0.5889 11 6 5.5199 7.3384 -1.4375 12 6 6.8575 6.8248 0.6093 13 6 6.7764 6.4293 2.0613 14 1 5.8197 6.1967 2.5049 15 6 7.9237 6.3645 2.8232 16 7 9.0888 6.6482 2.2830 17 14 7.8231 5.8750 4.6231 18 1 7.2415 4.5131 4.7339 19 1 9.1851 5.8816 5.2147 20 1 6.9627 6.8415 5.3517 21 6 2.7239 3.3756 1.1973 22 6 2.2632 2.0723 1.1973 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.0920 1.5601 -2.1324 29 1 2.9049 3.8845 -2.1323 30 1 3.0950 5.9618 -0.8898 31 1 3.0950 5.9616 0.8902 32 1 5.2882 4.9203 0.7815 33 1 5.9116 8.3556 -1.4379 34 1 6.1752 6.6969 -2.0268 35 1 4.5202 7.3334 -1.8718 36 1 7.4895 6.1159 0.0744 37 1 7.2840 7.8246 0.5283 38 1 9.8959 6.6030 2.8192 39 1 2.9042 3.8845 2.1326 40 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:59 Heat of formation + Delta-G solvation = -21.850525 kcal Electronic energy + Delta-G solvation = -17393.380101 eV Core-core repulsion = 14784.867155 eV Total energy + Delta-G solvation = -2608.512946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43535 -38.22287 -35.57866 -34.56480 -32.45877 -31.77082 -29.78356 -29.26614 -26.22508 -24.94793 -23.58192 -23.37262 -21.33722 -21.11042 -18.52377 -17.33388 -16.75992 -16.54293 -16.25063 -16.05555 -15.55941 -14.87604 -14.56058 -14.50254 -14.21151 -13.87120 -13.66567 -13.48941 -13.31536 -13.25661 -12.99028 -12.61228 -12.51457 -12.37820 -12.35468 -12.14065 -11.94857 -11.64574 -11.58608 -11.23913 -11.02553 -10.58340 -9.76893 -9.46070 -9.15816 -8.20385 -6.31119 0.44975 0.55990 1.38277 1.40432 1.48144 2.39145 2.83121 3.12181 3.60846 3.87359 3.94251 4.07082 4.19199 4.22817 4.32199 4.52045 4.54407 4.59111 4.62814 4.70277 4.71996 4.79222 4.82434 5.01652 5.09410 5.11273 5.19360 5.21524 5.26860 5.33297 5.41411 5.47542 5.51947 5.57893 5.76505 5.79564 5.83108 6.17164 6.19539 6.39748 6.59477 6.83672 7.37592 8.91163 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.005062 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.669401 B = 5530.500874 C = 6504.976639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.125 4.125 5 C -0.105 4.105 6 C -0.094 4.094 7 C 0.101 3.899 8 N -0.679 5.679 9 C 0.094 3.906 10 H 0.025 0.975 11 C -0.127 4.127 12 C 0.028 3.972 13 C -0.536 4.536 14 H 0.056 0.944 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.127 4.127 22 C -0.127 4.127 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.063 0.937 36 H -0.004 1.004 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.114 0.886 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 -10.703 -5.331 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.142 4.142 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.028 4.028 8 N -0.311 5.311 9 C -0.016 4.016 10 H 0.043 0.957 11 C -0.185 4.185 12 C -0.009 4.009 13 C -0.574 4.574 14 H 0.074 0.926 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.145 4.145 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.871 -10.737 -5.979 20.872 hybrid contribution 0.441 0.469 1.944 2.048 sum -16.430 -10.268 -4.035 19.790 Atomic orbital electron populations 1.21722 0.93988 1.02414 1.01886 1.20580 0.96708 0.91192 1.03527 1.20193 0.98700 0.97290 0.92832 1.21267 0.99978 0.94533 0.98456 1.21167 0.98423 0.95234 0.97548 1.19876 0.99586 0.96097 0.93902 1.20911 0.88324 0.92891 1.00683 1.60669 1.05977 1.14064 1.50397 1.21469 0.95756 0.88516 0.95820 0.95651 1.21707 1.01504 0.99810 0.95465 1.19130 0.92177 0.95142 0.94483 1.21487 0.93140 1.46259 0.96536 0.92595 1.25884 0.95062 0.95233 1.03108 1.70088 0.98780 1.49949 1.38205 0.85591 0.77279 0.79156 0.79573 1.19200 1.20901 1.19423 1.21200 0.99921 0.95798 0.97597 1.21184 1.00297 0.94380 0.98613 0.93123 0.92722 0.90993 0.90112 0.90621 0.84156 0.85316 0.89798 0.95577 0.83994 0.92790 0.93253 0.91830 0.98573 0.98544 0.92786 0.86797 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.08 -1.34 6.07 29.85 0.18 -1.16 16 3 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 4 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 5 C -0.11 -2.80 9.70 22.27 0.22 -2.58 16 6 C -0.09 -2.83 5.39 -19.87 -0.11 -2.94 16 7 C 0.10 3.26 5.61 85.56 0.48 3.74 16 8 N -0.68 -26.81 6.30 -495.59 -3.12 -29.93 16 9 C 0.09 3.97 2.59 44.92 0.12 4.09 16 10 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 11 C -0.13 -4.51 9.41 71.98 0.68 -3.84 16 12 C 0.03 1.49 4.57 29.85 0.14 1.63 16 13 C -0.54 -30.17 8.12 25.60 0.21 -29.96 16 14 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 C -0.13 -3.69 9.70 22.27 0.22 -3.47 16 22 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 28 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.08 2.46 7.38 -2.39 -0.02 2.45 16 31 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 32 H 0.34 15.07 7.20 -89.69 -0.65 14.42 16 33 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 36 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.11 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.28 330.53 3.16 -60.12 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.34 Total: 22.64 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 3.63 Total: -42.67 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.84 Total: -86.46 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.28 3.16 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.271 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds