Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47345 * 2 1 4 4 C 1.38240 * 119.99544 * 90.00559 * 3 2 1 5 5 C 1.38237 * 119.99668 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00460 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99687 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.52996 * 109.46819 * 205.00022 * 9 8 7 13 13 C 1.50704 * 109.47341 * 65.00385 * 12 9 8 14 14 H 1.08005 * 119.99728 * 359.97438 * 13 12 9 15 15 C 1.37872 * 119.99972 * 179.97438 * 13 12 9 16 16 N 1.31512 * 120.00363 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99722 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47306 * 120.00511 * 17 15 13 20 20 H 1.48502 * 109.47079 * 240.00240 * 17 15 13 21 21 C 1.38242 * 119.99952 * 0.25316 * 6 5 4 22 22 C 1.38231 * 120.00439 * 270.02318 * 3 2 1 23 23 H 1.08995 * 109.47085 * 59.99444 * 1 2 3 24 24 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46655 * 299.99410 * 1 2 3 26 26 H 1.09006 * 109.47343 * 240.00311 * 2 1 3 27 27 H 1.09005 * 109.47631 * 120.00575 * 2 1 3 28 28 H 1.07995 * 120.00363 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99717 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46763 * 330.00128 * 7 6 5 31 31 H 1.08995 * 109.47483 * 209.99785 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 33 33 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 35 35 H 1.09003 * 109.46813 * 60.00077 * 11 9 8 36 36 H 1.09006 * 109.47142 * 184.99909 * 12 9 8 37 37 H 1.08991 * 109.47453 * 304.99990 * 12 9 8 38 38 H 0.96996 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.07992 * 120.00186 * 179.73058 * 21 6 5 40 40 H 1.08001 * 119.99974 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9545 4.0272 0.0002 7 6 3.4569 5.4479 0.0002 8 7 4.9259 5.4478 0.0002 9 6 5.4524 6.8193 0.0008 10 1 4.7967 7.4605 -0.5883 11 6 5.5180 7.3398 1.4380 12 6 6.8557 6.8270 -0.6089 13 6 6.7747 6.4318 -2.0609 14 1 5.8181 6.1980 -2.5044 15 6 7.9219 6.3686 -2.8231 16 7 9.0868 6.6528 -2.2830 17 14 7.8216 5.8780 -4.6228 18 1 6.4066 5.6091 -4.9844 19 1 8.3478 6.9807 -5.4666 20 1 8.6307 4.6532 -4.8478 21 6 2.7185 3.3776 -1.1970 22 6 2.2623 2.0726 -1.1971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0825 1.5633 2.1325 29 1 2.9039 3.8846 2.1326 30 1 3.0936 5.9617 0.8903 31 1 3.0936 5.9618 -0.8897 32 1 5.2875 4.9217 0.7815 33 1 5.9082 8.3575 1.4385 34 1 4.5183 7.3342 1.8724 35 1 6.1737 6.6986 2.0271 36 1 7.2815 7.8272 -0.5279 37 1 7.4881 6.1185 -0.0742 38 1 9.8937 6.6087 -2.8194 39 1 2.8943 3.8882 -2.1322 40 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = -1.313755 kcal Electronic energy + Delta-G solvation = -17379.147337 eV Core-core repulsion = 14771.524933 eV Total energy + Delta-G solvation = -2607.622405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40542 -36.74658 -34.40538 -32.60784 -31.06615 -30.75266 -28.55166 -27.20472 -25.01026 -23.06954 -22.58185 -22.31991 -20.36203 -19.66322 -16.32248 -15.98448 -15.58420 -15.12498 -14.78084 -14.38884 -14.05315 -13.80765 -13.55692 -13.27806 -13.01330 -12.80438 -12.40824 -12.08452 -11.76129 -11.71613 -11.56363 -11.40960 -11.19670 -11.02685 -10.75118 -10.69911 -10.49420 -10.35421 -10.01714 -9.25350 -8.93021 -8.73637 -8.39733 -8.21033 -7.50925 -5.83765 -3.80937 1.48945 1.59370 3.40970 3.48142 3.53163 3.88922 4.60405 4.72737 4.82046 4.97143 5.11753 5.15607 5.22596 5.26414 5.44833 5.52358 5.54949 5.63088 5.75076 5.75895 5.77686 5.89961 5.93899 6.00843 6.03802 6.06977 6.24810 6.27306 6.46476 6.58083 6.65349 6.73670 6.89171 7.05962 7.18783 7.59626 7.73090 8.05736 8.10901 8.21597 8.64868 9.24445 9.80149 11.28561 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.005060 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.016534 B = 5532.595571 C = 6509.850294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.074 4.074 7 C 0.096 3.904 8 N -0.657 5.657 9 C 0.088 3.912 10 H 0.064 0.936 11 C -0.180 4.180 12 C 0.033 3.967 13 C -0.485 4.485 14 H 0.058 0.942 15 C 0.049 3.951 16 N -0.905 5.905 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.287 1.287 21 C -0.092 4.092 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.332 0.668 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.256 0.744 39 H 0.125 0.875 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 -9.096 6.991 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.133 4.133 6 C -0.074 4.074 7 C -0.033 4.033 8 N -0.287 5.287 9 C -0.021 4.021 10 H 0.082 0.918 11 C -0.239 4.239 12 C -0.005 4.005 13 C -0.524 4.524 14 H 0.077 0.923 15 C -0.150 4.150 16 N -0.546 5.546 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.110 4.110 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.716 -9.141 6.251 19.226 hybrid contribution -0.007 0.001 -0.054 0.054 sum -15.723 -9.139 6.197 19.213 Atomic orbital electron populations 1.21743 0.95010 1.01374 1.02158 1.20512 0.95923 0.93039 1.02618 1.19811 1.00014 0.95989 0.93328 1.20892 1.00966 0.94907 0.97199 1.21000 0.99944 0.94876 0.97495 1.19914 0.98000 0.96513 0.92991 1.20928 0.90339 0.91612 1.00394 1.60609 1.03671 1.15077 1.49357 1.21826 1.00293 0.87197 0.92781 0.91750 1.22559 0.99808 1.01949 0.99591 1.19117 0.88798 0.96752 0.95793 1.21187 0.93062 1.43389 0.94754 0.92339 1.25004 0.95645 0.96205 0.98161 1.69973 0.97873 1.50866 1.35905 0.86586 0.77894 0.77920 0.85859 1.19874 1.21444 1.21332 1.21091 0.97361 0.94435 0.98126 1.21000 1.00481 0.94998 0.97288 0.92588 0.92665 0.92676 0.91196 0.91306 0.86655 0.86616 0.95574 0.90600 0.85089 0.92453 0.94449 0.93041 0.96459 0.96524 0.93443 0.85745 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.08 -0.79 6.06 -27.89 -0.17 -0.96 16 3 C -0.09 -1.11 5.13 -104.62 -0.54 -1.64 16 4 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 5 C -0.11 -1.53 9.70 -39.58 -0.38 -1.91 16 6 C -0.07 -1.11 5.39 -104.62 -0.56 -1.67 16 7 C 0.10 1.53 5.61 -4.98 -0.03 1.50 16 8 N -0.66 -12.52 5.95 -107.99 -0.64 -13.16 16 9 C 0.09 1.80 2.53 -67.71 -0.17 1.62 16 10 H 0.06 1.33 7.80 -51.93 -0.41 0.93 16 11 C -0.18 -3.05 9.16 37.16 0.34 -2.70 16 12 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 13 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 14 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 15 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 16 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 17 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 C -0.09 -1.37 9.70 -39.58 -0.38 -1.75 16 22 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.03 0.38 7.38 -51.93 -0.38 0.00 16 31 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 32 H 0.33 6.04 8.46 -39.29 -0.33 5.71 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 35 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -30.89 332.17 -9.71 -40.60 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.95 Total: 1.54 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.83 Total: -24.30 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.09 Total: -40.26 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.89 -9.71 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.285 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds