Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47345 * 2 1 4 4 C 1.38240 * 119.99544 * 90.00559 * 3 2 1 5 5 C 1.38237 * 119.99668 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00460 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99687 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.52996 * 109.46819 * 205.00022 * 9 8 7 13 13 C 1.50704 * 109.47341 * 65.00385 * 12 9 8 14 14 H 1.08005 * 119.99728 * 359.97438 * 13 12 9 15 15 C 1.37872 * 119.99972 * 179.97438 * 13 12 9 16 16 N 1.31512 * 120.00363 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99722 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47306 * 120.00511 * 17 15 13 20 20 H 1.48502 * 109.47079 * 240.00240 * 17 15 13 21 21 C 1.38242 * 119.99952 * 0.25316 * 6 5 4 22 22 C 1.38231 * 120.00439 * 270.02318 * 3 2 1 23 23 H 1.08995 * 109.47085 * 59.99444 * 1 2 3 24 24 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46655 * 299.99410 * 1 2 3 26 26 H 1.09006 * 109.47343 * 240.00311 * 2 1 3 27 27 H 1.09005 * 109.47631 * 120.00575 * 2 1 3 28 28 H 1.07995 * 120.00363 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99717 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46763 * 330.00128 * 7 6 5 31 31 H 1.08995 * 109.47483 * 209.99785 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 33 33 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 35 35 H 1.09003 * 109.46813 * 60.00077 * 11 9 8 36 36 H 1.09006 * 109.47142 * 184.99909 * 12 9 8 37 37 H 1.08991 * 109.47453 * 304.99990 * 12 9 8 38 38 H 0.96996 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.07992 * 120.00186 * 179.73058 * 21 6 5 40 40 H 1.08001 * 119.99974 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9545 4.0272 0.0002 7 6 3.4569 5.4479 0.0002 8 7 4.9259 5.4478 0.0002 9 6 5.4524 6.8193 0.0008 10 1 4.7967 7.4605 -0.5883 11 6 5.5180 7.3398 1.4380 12 6 6.8557 6.8270 -0.6089 13 6 6.7747 6.4318 -2.0609 14 1 5.8181 6.1980 -2.5044 15 6 7.9219 6.3686 -2.8231 16 7 9.0868 6.6528 -2.2830 17 14 7.8216 5.8780 -4.6228 18 1 6.4066 5.6091 -4.9844 19 1 8.3478 6.9807 -5.4666 20 1 8.6307 4.6532 -4.8478 21 6 2.7185 3.3776 -1.1970 22 6 2.2623 2.0726 -1.1971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0825 1.5633 2.1325 29 1 2.9039 3.8846 2.1326 30 1 3.0936 5.9617 0.8903 31 1 3.0936 5.9618 -0.8897 32 1 5.2875 4.9217 0.7815 33 1 5.9082 8.3575 1.4385 34 1 4.5183 7.3342 1.8724 35 1 6.1737 6.6986 2.0271 36 1 7.2815 7.8272 -0.5279 37 1 7.4881 6.1185 -0.0742 38 1 9.8937 6.6087 -2.8194 39 1 2.8943 3.8882 -2.1322 40 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = -18.364673 kcal Electronic energy + Delta-G solvation = -17379.886721 eV Core-core repulsion = 14771.524933 eV Total energy + Delta-G solvation = -2608.361788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43192 -38.23766 -35.54991 -34.55551 -32.42442 -31.76166 -29.85296 -29.00682 -26.15277 -24.94953 -23.58682 -23.40615 -21.51563 -21.21845 -18.39780 -17.23042 -16.61150 -16.51025 -16.23613 -16.08197 -15.32889 -14.80202 -14.51881 -14.44784 -14.32022 -14.11422 -13.61973 -13.60407 -13.32311 -13.22924 -12.95843 -12.69017 -12.46818 -12.41155 -12.31726 -12.02574 -11.90180 -11.63283 -11.60410 -11.13245 -11.07950 -10.49234 -9.76066 -9.43956 -8.96581 -8.09577 -6.14102 0.45923 0.56745 1.40033 1.41172 1.54000 2.47329 2.83834 3.23658 3.61202 3.88128 3.94275 4.07690 4.19517 4.23722 4.26461 4.45528 4.52568 4.54602 4.59577 4.64072 4.70929 4.79324 4.82889 4.97636 5.09671 5.11164 5.21280 5.23664 5.26090 5.29083 5.41243 5.50498 5.57102 5.67954 5.77246 5.81315 5.90754 6.17910 6.33750 6.48965 6.71691 7.00070 7.51410 9.02918 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.005060 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.016534 B = 5532.595571 C = 6509.850294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.093 4.093 7 C 0.104 3.896 8 N -0.676 5.676 9 C 0.098 3.902 10 H 0.059 0.941 11 C -0.169 4.169 12 C 0.037 3.963 13 C -0.497 4.497 14 H 0.055 0.945 15 C -0.007 4.007 16 N -0.941 5.941 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.114 4.114 22 C -0.129 4.129 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.335 0.665 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.052 0.948 36 H -0.007 1.007 37 H -0.011 1.011 38 H 0.258 0.742 39 H 0.111 0.889 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.600 -10.490 7.532 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.094 4.094 7 C -0.024 4.024 8 N -0.307 5.307 9 C -0.011 4.011 10 H 0.078 0.922 11 C -0.228 4.228 12 C 0.000 4.000 13 C -0.535 4.535 14 H 0.073 0.927 15 C -0.203 4.203 16 N -0.584 5.584 17 Si 0.782 3.218 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.210 1.210 21 C -0.132 4.132 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.011 0.989 37 H 0.007 0.993 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.394 -10.534 6.796 21.441 hybrid contribution 0.483 0.386 -0.199 0.649 sum -16.911 -10.149 6.597 20.797 Atomic orbital electron populations 1.21721 0.93996 1.02405 1.01882 1.20578 0.96701 0.91257 1.03492 1.20181 0.98763 0.97255 0.92858 1.21237 1.00000 0.94566 0.98357 1.21210 0.99493 0.95450 0.97403 1.19887 0.99480 0.96199 0.93789 1.20845 0.88128 0.92743 1.00688 1.60425 1.05946 1.14239 1.50061 1.21487 0.96682 0.88373 0.94593 0.92231 1.22406 1.01627 1.01658 0.97094 1.19002 0.91835 0.94285 0.94884 1.21519 0.92888 1.42910 0.96221 0.92685 1.25864 0.95330 0.96294 1.02818 1.70098 0.98586 1.52020 1.37691 0.85523 0.78185 0.77667 0.80391 1.19055 1.20598 1.20957 1.21152 0.98775 0.95495 0.97814 1.21204 1.00414 0.94472 0.98600 0.93185 0.91014 0.92657 0.90758 0.90053 0.84093 0.85021 0.93611 0.91746 0.84669 0.92435 0.91534 0.92900 0.98866 0.99263 0.93290 0.87095 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.09 -2.01 5.13 -19.87 -0.10 -2.11 16 4 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 5 C -0.12 -2.89 9.70 22.27 0.22 -2.68 16 6 C -0.09 -2.73 5.39 -19.87 -0.11 -2.83 16 7 C 0.10 3.26 5.61 85.56 0.48 3.74 16 8 N -0.68 -25.68 5.95 -495.57 -2.95 -28.63 16 9 C 0.10 4.01 2.53 44.91 0.11 4.12 16 10 H 0.06 2.47 7.80 -2.39 -0.02 2.45 16 11 C -0.17 -5.51 9.16 71.98 0.66 -4.85 16 12 C 0.04 1.99 4.65 29.85 0.14 2.13 16 13 C -0.50 -29.01 8.84 25.60 0.23 -28.78 16 14 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 16 N -0.94 -59.08 13.29 21.45 0.28 -58.79 16 17 Si 0.96 46.54 29.54 68.60 2.03 48.57 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 21 C -0.11 -3.40 9.70 22.27 0.22 -3.19 16 22 C -0.13 -3.29 9.70 22.27 0.22 -3.07 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 27 H 0.08 1.13 8.09 -2.38 -0.02 1.11 16 28 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 29 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.05 1.24 7.38 -2.39 -0.02 1.22 16 31 H 0.06 2.12 8.00 -2.39 -0.02 2.10 16 32 H 0.34 12.10 8.46 -89.69 -0.76 11.34 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.79 7.45 -2.39 -0.02 1.77 16 35 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 36 H -0.01 -0.40 8.14 -2.38 -0.02 -0.41 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.11 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -66.84 332.17 3.22 -63.62 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.23 Total: 17.63 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.63 Total: -42.40 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.67 Total: -87.42 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -66.84 3.22 -63.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.258 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds