Wall clock time and date at job start Mon Mar 30 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46661 * 2 1 4 4 C 1.50693 * 109.47328 * 119.99727 * 2 1 3 5 5 C 1.38131 * 120.04101 * 304.01682 * 4 2 1 6 6 C 1.38259 * 120.07534 * 180.02562 * 5 4 2 7 7 C 1.38308 * 120.15087 * 0.02562 * 6 5 4 8 8 C 1.38081 * 120.07428 * 359.74566 * 7 6 5 9 9 C 1.38895 * 120.03648 * 124.04111 * 4 2 1 10 10 N 1.39667 * 120.07270 * 359.95072 * 9 4 2 11 11 C 1.46499 * 119.99971 * 186.02537 * 10 9 4 12 12 H 1.09003 * 109.47276 * 35.00424 * 11 10 9 13 13 C 1.53000 * 109.47463 * 275.00278 * 11 10 9 14 14 C 1.53006 * 109.47277 * 155.00207 * 11 10 9 15 15 C 1.50698 * 109.46990 * 295.00468 * 14 11 10 16 16 H 1.07997 * 120.00148 * 359.97438 * 15 14 11 17 17 C 1.37876 * 119.99857 * 180.27778 * 15 14 11 18 18 N 1.31515 * 120.00195 * 359.71964 * 17 15 14 19 19 Si 1.86800 * 120.00216 * 179.72481 * 17 15 14 20 20 H 1.48496 * 109.47139 * 89.99419 * 19 17 15 21 21 H 1.48497 * 109.47184 * 209.99578 * 19 17 15 22 22 H 1.48501 * 109.46776 * 329.99649 * 19 17 15 23 23 H 1.09002 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47377 * 299.99559 * 1 2 3 25 25 H 1.08998 * 109.47477 * 60.00311 * 1 2 3 26 26 H 1.08995 * 109.47186 * 240.00240 * 2 1 3 27 27 H 1.09001 * 109.46783 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46921 * 300.00029 * 3 2 1 29 29 H 1.08995 * 109.47124 * 60.00202 * 3 2 1 30 30 H 1.08000 * 119.95878 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.92479 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.96406 * 179.97438 * 7 6 5 33 33 H 1.08007 * 120.03952 * 180.27268 * 8 7 6 34 34 H 0.97002 * 120.00530 * 6.03445 * 10 9 4 35 35 H 1.09001 * 109.47251 * 180.02562 * 13 11 10 36 36 H 1.08996 * 109.47280 * 300.00050 * 13 11 10 37 37 H 1.09002 * 109.46867 * 60.00114 * 13 11 10 38 38 H 1.09001 * 109.46989 * 175.00134 * 14 11 10 39 39 H 1.09000 * 109.47054 * 55.00425 * 14 11 10 40 40 H 0.96999 * 120.00403 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.6322 -0.2894 2.4837 6 6 2.0931 -0.9402 3.6131 7 6 2.9563 -2.0141 3.4924 8 6 3.3566 -2.4430 2.2425 9 6 2.8987 -1.7887 1.1056 10 7 3.3049 -2.2173 -0.1601 11 6 4.1109 -3.4329 -0.2981 12 1 3.8033 -4.1601 0.4533 13 6 5.5889 -3.0901 -0.1011 14 6 3.9064 -4.0247 -1.6942 15 6 2.4762 -4.4753 -1.8442 16 1 1.7826 -4.3523 -1.0256 17 6 2.0547 -5.0502 -3.0243 18 7 2.8994 -5.2004 -4.0211 19 14 0.2839 -5.6158 -3.2076 20 1 -0.5382 -4.5024 -3.7456 21 1 0.2267 -6.7692 -4.1412 22 1 -0.2446 -6.0256 -1.8817 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.9585 0.5491 2.5814 31 1 1.7783 -0.6093 4.5918 32 1 3.3148 -2.5200 4.3767 33 1 4.0273 -3.2845 2.1487 34 1 3.0536 -1.7101 -0.9478 35 1 6.1885 -3.9944 -0.2042 36 1 5.8966 -2.3629 -0.8525 37 1 5.7346 -2.6685 0.8935 38 1 4.5720 -4.8773 -1.8285 39 1 4.1295 -3.2676 -2.4460 40 1 2.6029 -5.6046 -4.8515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:13 Heat of formation + Delta-G solvation = -14.338265 kcal Electronic energy + Delta-G solvation = -18256.285971 eV Core-core repulsion = 15648.098782 eV Total energy + Delta-G solvation = -2608.187190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74170 -37.73595 -36.13489 -34.88515 -32.71682 -30.63051 -29.29797 -28.77886 -27.93837 -25.17086 -24.48903 -22.83326 -21.25030 -20.63729 -18.58918 -18.30781 -17.04070 -16.48434 -16.28284 -15.34004 -15.14865 -14.83993 -14.72284 -14.51159 -14.37095 -13.99642 -13.54686 -13.37731 -13.33903 -13.09602 -12.88056 -12.79999 -12.66325 -12.51771 -12.33410 -12.01607 -11.97622 -11.47292 -11.36806 -11.31716 -11.21491 -10.70500 -10.59178 -9.49179 -8.22339 -8.03864 -6.30208 0.67204 0.92343 1.35558 1.36419 1.47192 2.37798 2.74920 3.12889 3.13300 3.89449 3.99405 4.16292 4.33043 4.38417 4.41109 4.49455 4.54067 4.59558 4.70618 4.75556 4.84190 4.90463 5.01059 5.01750 5.08297 5.09493 5.18926 5.25415 5.34551 5.36119 5.43203 5.44375 5.53861 5.67781 5.78709 5.83394 5.88926 6.20386 6.24820 6.71314 6.83575 7.04448 7.38385 8.89307 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.007136 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.049284 B = 3922.590301 C = 4486.855538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.132 4.132 4 C -0.170 4.170 5 C -0.071 4.071 6 C -0.193 4.193 7 C -0.082 4.082 8 C -0.220 4.220 9 C 0.209 3.791 10 N -0.726 5.726 11 C 0.161 3.839 12 H 0.057 0.943 13 C -0.154 4.154 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.050 0.950 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.271 1.271 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.393 0.607 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.009 0.991 39 H -0.001 1.001 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 11.144 12.294 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.189 4.189 4 C -0.175 4.175 5 C -0.090 4.090 6 C -0.213 4.213 7 C -0.100 4.100 8 C -0.243 4.243 9 C 0.104 3.896 10 N -0.354 5.354 11 C 0.055 3.945 12 H 0.075 0.925 13 C -0.213 4.213 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.069 0.931 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.195 1.195 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.017 0.983 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.433 10.880 12.088 16.327 hybrid contribution -0.703 -0.646 -1.010 1.390 sum -2.136 10.234 11.079 15.233 Atomic orbital electron populations 1.21799 0.94006 1.01028 1.02548 1.19904 0.96318 0.96337 0.94517 1.21770 1.00462 0.94187 1.02512 1.19495 1.02509 0.99297 0.96187 1.20899 0.98150 0.98988 0.90927 1.21080 1.02296 0.98978 0.98954 1.21094 0.96318 0.96254 0.96342 1.20818 1.07391 1.03954 0.92168 1.18065 0.92579 0.93034 0.85937 1.44954 1.57689 1.27806 1.04967 1.20846 0.89968 0.85769 0.97887 0.92483 1.22184 0.95915 1.01655 1.01503 1.19237 0.95789 0.94897 0.91508 1.21441 0.96645 1.39000 0.99001 0.93140 1.25791 1.01404 0.96158 0.95806 1.70063 1.36488 1.45601 1.04846 0.85626 0.80466 0.78056 0.77995 1.19984 1.20665 1.19529 0.94653 0.90965 0.91850 0.93073 0.93636 0.91808 0.91277 0.84628 0.84470 0.84665 0.86767 0.77036 0.91702 0.93194 0.91971 0.97312 0.98293 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.96 71.98 0.65 -2.84 16 2 C -0.05 -1.46 3.03 -11.54 -0.03 -1.50 16 3 C -0.13 -3.00 9.05 71.98 0.65 -2.35 16 4 C -0.17 -5.21 4.80 -19.73 -0.09 -5.30 16 5 C -0.07 -1.84 8.73 22.25 0.19 -1.65 16 6 C -0.19 -4.76 10.04 22.29 0.22 -4.54 16 7 C -0.08 -2.20 10.04 22.25 0.22 -1.98 16 8 C -0.22 -7.17 8.69 22.40 0.19 -6.97 16 9 C 0.21 7.33 6.61 38.22 0.25 7.58 16 10 N -0.73 -28.03 4.87 -318.95 -1.55 -29.58 16 11 C 0.16 6.55 2.19 44.99 0.10 6.65 16 12 H 0.06 2.41 6.76 -2.39 -0.02 2.39 16 13 C -0.15 -5.24 9.32 71.98 0.67 -4.57 16 14 C 0.02 1.17 4.52 29.85 0.13 1.31 16 15 C -0.52 -29.19 8.84 25.60 0.23 -28.96 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.36 5.46 84.65 0.46 0.82 16 18 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 19 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.53 7.18 -2.39 -0.02 1.51 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.68 5.70 -2.39 -0.01 1.66 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.34 7.63 -2.39 -0.02 1.32 16 30 H 0.14 2.79 7.10 -2.91 -0.02 2.77 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.11 3.72 5.85 -2.91 -0.02 3.71 16 34 H 0.39 15.67 6.27 -92.71 -0.58 15.09 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.91 7.20 -2.39 -0.02 1.89 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -61.57 320.30 5.03 -56.54 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.42 Total: 25.84 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 3.85 Total: -44.28 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.27 Total: -84.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.57 5.03 -56.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.203 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds