Wall clock time and date at job start Mon Mar 30 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46845 * 2 1 4 4 C 1.50705 * 109.47301 * 119.99683 * 2 1 3 5 5 C 1.38120 * 120.03932 * 293.91571 * 4 2 1 6 6 C 1.38260 * 120.07991 * 179.97438 * 5 4 2 7 7 C 1.38313 * 120.14474 * 0.02562 * 6 5 4 8 8 C 1.38076 * 120.07542 * 359.97104 * 7 6 5 9 9 C 1.38895 * 120.03617 * 113.63323 * 4 2 1 10 10 N 1.39670 * 120.07368 * 0.02932 * 9 4 2 11 11 C 1.46498 * 119.99858 * 180.66897 * 10 9 4 12 12 H 1.08992 * 109.47371 * 325.00072 * 11 10 9 13 13 C 1.53009 * 109.47094 * 85.00090 * 11 10 9 14 14 C 1.52998 * 109.47190 * 204.99752 * 11 10 9 15 15 C 1.50702 * 109.47321 * 64.99949 * 14 11 10 16 16 H 1.08004 * 119.99433 * 0.02562 * 15 14 11 17 17 C 1.37868 * 120.00298 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99973 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99925 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47223 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47072 * 120.00790 * 19 17 15 22 22 H 1.48509 * 109.47282 * 240.00308 * 19 17 15 23 23 H 1.08999 * 109.47366 * 300.00303 * 1 2 3 24 24 H 1.08997 * 109.47222 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47220 * 60.00203 * 1 2 3 26 26 H 1.08999 * 109.47366 * 239.99697 * 2 1 3 27 27 H 1.09004 * 109.46856 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46790 * 299.99454 * 3 2 1 29 29 H 1.08999 * 109.47426 * 60.00265 * 3 2 1 30 30 H 1.08007 * 119.95835 * 359.97438 * 5 4 2 31 31 H 1.07996 * 119.92923 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.95945 * 179.97438 * 7 6 5 33 33 H 1.08001 * 120.03599 * 180.02562 * 8 7 6 34 34 H 0.97009 * 120.00225 * 0.66759 * 10 9 4 35 35 H 1.09001 * 109.47034 * 59.99588 * 13 11 10 36 36 H 1.08998 * 109.47244 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.46756 * 299.99812 * 13 11 10 38 38 H 1.08998 * 109.47149 * 184.99938 * 14 11 10 39 39 H 1.09005 * 109.47506 * 305.00224 * 14 11 10 40 40 H 0.97003 * 119.99667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8059 -0.1704 2.4815 6 6 2.2659 -0.8217 3.6110 7 6 2.9547 -2.0152 3.4925 8 6 3.1846 -2.5606 2.2450 9 6 2.7186 -1.9117 1.1083 10 7 2.9448 -2.4632 -0.1548 11 6 3.6559 -3.7378 -0.2810 12 1 4.4231 -3.8037 0.4904 13 6 2.6660 -4.8927 -0.1156 14 6 4.3114 -3.8217 -1.6608 15 6 5.3737 -2.7592 -1.7778 16 1 5.5627 -2.0912 -0.9505 17 6 6.1051 -2.6406 -2.9405 18 7 5.8753 -3.4544 -3.9478 19 14 7.4223 -1.3240 -3.0852 20 1 7.4842 -0.5449 -1.8225 21 1 8.7380 -1.9656 -3.3356 22 1 7.0923 -0.4153 -4.2124 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.2687 0.7617 2.5774 31 1 2.0878 -0.3971 4.5879 32 1 3.3131 -2.5212 4.3767 33 1 3.7221 -3.4928 2.1532 34 1 2.6309 -2.0023 -0.9487 35 1 1.8986 -4.8268 -0.8869 36 1 3.1950 -5.8410 -0.2099 37 1 2.1990 -4.8329 0.8675 38 1 4.7650 -4.8046 -1.7884 39 1 3.5565 -3.6671 -2.4318 40 1 6.3896 -3.3707 -4.7660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:16 Heat of formation + Delta-G solvation = -14.049758 kcal Electronic energy + Delta-G solvation = -18237.123947 eV Core-core repulsion = 15628.949268 eV Total energy + Delta-G solvation = -2608.174679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74336 -37.73737 -36.13522 -34.88699 -32.72375 -30.62522 -29.30393 -28.77098 -27.93684 -25.18276 -24.50873 -22.84366 -21.24552 -20.61971 -18.59450 -18.31372 -17.05070 -16.48177 -16.27476 -15.37818 -15.12765 -14.86477 -14.68468 -14.53244 -14.35000 -13.99967 -13.57231 -13.37724 -13.32780 -13.09403 -12.89273 -12.79199 -12.67171 -12.50709 -12.35770 -12.01530 -11.97194 -11.46165 -11.35802 -11.34614 -11.19117 -10.71485 -10.59583 -9.49501 -8.22735 -8.03428 -6.30558 0.67129 0.92578 1.34327 1.36417 1.48400 2.37631 2.74608 3.12491 3.13205 3.89300 3.99026 4.15255 4.33071 4.38507 4.41065 4.49670 4.54312 4.59142 4.70000 4.75251 4.84593 4.91594 5.01320 5.02030 5.08175 5.09082 5.18843 5.24833 5.34758 5.36072 5.42983 5.44602 5.53729 5.67589 5.78533 5.83441 5.88880 6.20107 6.24686 6.70935 6.83534 7.04221 7.38184 8.89136 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.006946 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.163237 B = 4029.991392 C = 4485.027592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.171 4.171 5 C -0.071 4.071 6 C -0.194 4.194 7 C -0.081 4.081 8 C -0.222 4.222 9 C 0.210 3.790 10 N -0.726 5.726 11 C 0.159 3.841 12 H 0.059 0.941 13 C -0.153 4.153 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.050 0.950 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.393 0.607 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.009 0.991 39 H -0.001 1.001 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 6.283 12.064 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.176 4.176 5 C -0.089 4.089 6 C -0.214 4.214 7 C -0.100 4.100 8 C -0.245 4.245 9 C 0.105 3.895 10 N -0.353 5.353 11 C 0.054 3.946 12 H 0.077 0.923 13 C -0.211 4.211 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.069 0.931 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.230 0.770 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.027 0.973 39 H 0.017 0.983 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.669 6.040 11.862 16.452 hybrid contribution 0.950 0.336 -0.982 1.407 sum -8.719 6.376 10.879 15.330 Atomic orbital electron populations 1.21761 0.93203 1.01435 1.02505 1.19905 0.96652 0.96035 0.94446 1.21806 1.00136 0.94850 1.02615 1.19488 1.05928 0.95906 0.96264 1.20902 0.97830 0.99242 0.90929 1.21077 1.04097 0.97221 0.98989 1.21086 0.96817 0.95729 0.96323 1.20802 1.08271 1.03108 0.92306 1.18062 0.93177 0.92316 0.85966 1.44967 1.61958 1.23660 1.04764 1.20860 0.92594 0.83094 0.98055 0.92318 1.22162 0.99404 0.98123 1.01433 1.19241 0.94529 0.96069 0.91626 1.21475 1.18699 1.16320 0.99526 0.93130 1.25794 0.99539 0.98178 0.95693 1.70074 1.42413 1.39352 1.05191 0.85564 0.79160 0.79279 0.78041 1.19504 1.20371 1.20403 0.91330 0.93765 0.91746 0.93074 0.94511 0.91759 0.90966 0.84575 0.84471 0.84720 0.86902 0.77013 0.93190 0.91675 0.92145 0.97296 0.98284 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.06 71.98 0.65 -2.32 16 2 C -0.05 -1.43 3.03 -11.54 -0.03 -1.46 16 3 C -0.14 -3.37 8.94 71.98 0.64 -2.72 16 4 C -0.17 -5.21 4.80 -19.73 -0.09 -5.30 16 5 C -0.07 -1.82 8.76 22.25 0.19 -1.63 16 6 C -0.19 -4.80 10.04 22.29 0.22 -4.57 16 7 C -0.08 -2.21 10.04 22.25 0.22 -1.98 16 8 C -0.22 -7.30 8.91 22.40 0.20 -7.10 16 9 C 0.21 7.38 6.62 38.22 0.25 7.63 16 10 N -0.73 -28.03 4.89 -318.96 -1.56 -29.59 16 11 C 0.16 6.50 2.22 44.99 0.10 6.60 16 12 H 0.06 2.47 6.44 -2.39 -0.02 2.45 16 13 C -0.15 -5.21 9.47 71.99 0.68 -4.53 16 14 C 0.02 1.16 4.52 29.85 0.13 1.29 16 15 C -0.52 -29.15 8.84 25.60 0.23 -28.93 16 16 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -55.59 13.29 21.44 0.28 -55.30 16 19 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H 0.07 1.33 7.78 -2.39 -0.02 1.31 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.64 5.70 -2.39 -0.01 1.63 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.47 7.07 -2.39 -0.02 1.46 16 30 H 0.14 2.78 7.10 -2.91 -0.02 2.76 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.11 3.75 6.22 -2.91 -0.02 3.74 16 34 H 0.39 15.67 6.24 -92.70 -0.58 15.10 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.87 7.85 -2.39 -0.02 1.85 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -61.68 321.45 5.04 -56.63 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.43 Total: 25.66 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.87 Total: -44.23 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.28 Total: -84.89 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.68 5.04 -56.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.585 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds