Wall clock time and date at job start Mon Mar 30 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46921 * 2 1 4 4 C 1.53001 * 109.47116 * 240.00039 * 2 1 3 5 5 C 1.50694 * 109.47005 * 174.99682 * 4 2 1 6 6 H 1.08006 * 120.00280 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00178 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99762 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47174 * 89.99918 * 9 7 5 11 11 H 1.48505 * 109.46901 * 210.00136 * 9 7 5 12 12 H 1.48499 * 109.47089 * 329.99702 * 9 7 5 13 13 N 1.46897 * 109.47386 * 119.99908 * 2 1 3 14 14 C 1.46901 * 111.00005 * 257.06708 * 13 2 1 15 15 C 1.52999 * 109.47515 * 54.43414 * 14 13 2 16 16 C 1.53004 * 109.46991 * 294.43496 * 14 13 2 17 17 C 1.50700 * 109.47201 * 174.43745 * 14 13 2 18 18 C 1.38239 * 120.00081 * 179.97438 * 17 14 13 19 19 C 1.38235 * 119.99845 * 180.25932 * 18 17 14 20 20 C 1.38237 * 119.99922 * 359.50312 * 19 18 17 21 21 C 1.38230 * 120.00017 * 0.47284 * 20 19 18 22 22 C 1.38236 * 119.99804 * 359.97438 * 17 14 13 23 23 H 1.08997 * 109.46670 * 185.51904 * 1 2 3 24 24 H 1.09002 * 109.46641 * 305.51633 * 1 2 3 25 25 H 1.09002 * 109.46971 * 65.51748 * 1 2 3 26 26 H 1.08999 * 109.47164 * 294.99825 * 4 2 1 27 27 H 1.08999 * 109.46743 * 54.99785 * 4 2 1 28 28 H 0.97000 * 119.99952 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00336 * 133.10933 * 13 2 1 30 30 H 1.08997 * 109.47014 * 174.99440 * 15 14 13 31 31 H 1.08998 * 109.47095 * 294.99853 * 15 14 13 32 32 H 1.09000 * 109.46708 * 54.99819 * 15 14 13 33 33 H 1.08999 * 109.47097 * 306.03736 * 16 14 13 34 34 H 1.08999 * 109.46970 * 66.03144 * 16 14 13 35 35 H 1.08992 * 109.47248 * 186.03553 * 16 14 13 36 36 H 1.07998 * 119.99679 * 359.97438 * 18 17 14 37 37 H 1.07997 * 119.99957 * 179.72534 * 19 18 17 38 38 H 1.07998 * 120.00122 * 180.26226 * 20 19 18 39 39 H 1.08006 * 120.00173 * 179.78097 * 21 20 19 40 40 H 1.08001 * 120.00083 * 359.97438 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8378 -3.2995 9 14 6.0922 -1.0621 -2.4362 10 1 6.7001 -2.2147 -1.7240 11 1 6.5297 -1.0704 -3.8553 12 1 6.5267 0.2031 -1.7916 13 7 2.0198 -0.6924 1.1994 14 6 2.4846 0.2681 2.2089 15 6 1.3702 1.2727 2.5085 16 6 3.7122 1.0115 1.6784 17 6 2.8503 -0.4680 3.4720 18 6 3.3176 0.2314 4.5691 19 6 3.6580 -0.4445 5.7259 20 6 3.5214 -1.8187 5.7891 21 6 3.0536 -2.5179 4.6923 22 6 2.7183 -1.8427 3.5337 23 1 -0.3632 -1.0229 0.0988 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4259 -0.9353 26 1 1.7517 -1.7715 -1.2056 27 1 1.6054 -0.2617 -2.1369 28 1 4.0609 -2.2452 -4.0346 29 1 2.7472 -1.3512 0.9650 30 1 1.6822 1.9301 3.3200 31 1 1.1672 1.8666 1.6174 32 1 0.4673 0.7370 2.8016 33 1 4.4664 0.2898 1.3645 34 1 3.4236 1.6286 0.8276 35 1 4.1211 1.6455 2.4650 36 1 3.4211 1.3053 4.5207 37 1 4.0274 0.1014 6.5814 38 1 3.7834 -2.3463 6.6943 39 1 2.9502 -3.5920 4.7406 40 1 2.3528 -2.3890 2.6767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:23 Heat of formation + Delta-G solvation = -3.722079 kcal Electronic energy + Delta-G solvation = -18493.453816 eV Core-core repulsion = 15885.726978 eV Total energy + Delta-G solvation = -2607.726838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79975 -38.62869 -35.54169 -33.99708 -31.80354 -30.61875 -29.64366 -29.42008 -27.79004 -25.04311 -23.99363 -23.12563 -21.28469 -20.04943 -18.49925 -17.91179 -16.69097 -16.58865 -15.94879 -15.73412 -15.17829 -14.89478 -14.45260 -14.35193 -14.17792 -14.04758 -13.53677 -13.35053 -13.16698 -12.95146 -12.83481 -12.74965 -12.60206 -12.47638 -12.32438 -12.18711 -11.79568 -11.65898 -11.35536 -11.09774 -10.94093 -10.56504 -9.68974 -9.50433 -9.08943 -8.18172 -6.26836 0.57963 0.63662 1.36774 1.37446 1.47032 2.39080 3.00770 3.13868 3.41011 3.82210 4.12077 4.25858 4.28965 4.30187 4.40099 4.43032 4.65082 4.68780 4.74605 4.76524 4.77435 4.90232 4.95994 5.04601 5.10040 5.18178 5.23074 5.29411 5.33078 5.43176 5.46049 5.54539 5.57692 5.69834 5.75413 5.87125 5.89392 6.24729 6.26130 6.52339 6.67190 6.90051 7.41882 8.93666 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.007003 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.586868 B = 3997.371842 C = 4600.967102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.044 0.956 4 C 0.021 3.979 5 C -0.530 4.530 6 H 0.070 0.930 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.669 5.669 14 C 0.147 3.853 15 C -0.128 4.128 16 C -0.167 4.167 17 C -0.075 4.075 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.123 4.123 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.045 0.955 26 H -0.007 1.007 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.340 0.660 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 4.369 17.493 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.062 0.938 4 C -0.017 4.017 5 C -0.568 4.568 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.301 5.301 14 C 0.056 3.944 15 C -0.186 4.186 16 C -0.225 4.225 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.141 4.141 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.620 4.216 17.600 18.170 hybrid contribution 1.701 -0.087 -1.340 2.167 sum 0.081 4.128 16.260 16.776 Atomic orbital electron populations 1.21837 0.95016 1.01301 1.00653 1.21432 0.94641 0.96092 0.89181 0.93759 1.19299 0.95023 0.94538 0.92817 1.21752 0.93196 1.33568 1.08296 0.91159 1.25843 1.02713 0.95181 0.95611 1.70104 1.37240 1.37048 1.12824 0.85659 0.80722 0.78779 0.77194 1.20114 1.21133 1.18961 1.60907 1.41069 1.17117 1.11009 1.19809 0.93626 0.91356 0.89605 1.21918 0.97501 0.97461 1.01678 1.22529 0.98202 1.00597 1.01201 1.19878 0.98741 0.94001 0.94897 1.21148 0.99721 1.00489 0.92898 1.21391 0.99966 0.94757 0.98180 1.21421 0.99860 0.94771 0.98920 1.21400 0.99607 1.00619 0.93392 1.21234 0.99700 0.94582 0.98626 0.93577 0.91597 0.93550 0.98852 0.99013 0.93066 0.84071 0.90756 0.92516 0.92234 0.94289 0.92969 0.90791 0.84938 0.83745 0.84017 0.85101 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.25 71.98 0.67 -3.92 16 2 C 0.10 3.89 1.71 44.92 0.08 3.97 16 3 H 0.04 1.81 4.97 -2.39 -0.01 1.79 16 4 C 0.02 1.07 4.42 29.85 0.13 1.21 16 5 C -0.53 -28.88 8.18 25.60 0.21 -28.67 16 6 H 0.07 3.63 5.26 -2.91 -0.02 3.61 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 9 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.67 -25.00 4.78 -451.96 -2.16 -27.16 16 14 C 0.15 4.62 0.77 2.78 0.00 4.62 16 15 C -0.13 -3.45 7.03 71.98 0.51 -2.95 16 16 C -0.17 -5.43 7.11 71.98 0.51 -4.92 16 17 C -0.07 -2.19 4.78 -19.86 -0.09 -2.28 16 18 C -0.12 -3.01 8.59 22.27 0.19 -2.82 16 19 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 20 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 21 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 22 C -0.12 -3.74 9.19 22.27 0.20 -3.53 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 2.00 6.13 -2.39 -0.01 1.98 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.34 14.40 6.54 -89.70 -0.59 13.82 16 30 H 0.07 1.64 7.23 -2.39 -0.02 1.63 16 31 H 0.06 1.56 6.18 -2.39 -0.01 1.55 16 32 H 0.06 1.63 7.64 -2.39 -0.02 1.61 16 33 H 0.04 1.44 7.08 -2.39 -0.02 1.42 16 34 H 0.05 1.82 6.47 -2.39 -0.02 1.81 16 35 H 0.07 1.98 7.19 -2.39 -0.02 1.96 16 36 H 0.13 2.70 7.04 -2.91 -0.02 2.68 16 37 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.12 3.92 6.54 -2.91 -0.02 3.90 16 Total: -1.00 -61.90 308.86 4.12 -57.78 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.43 Total: 25.96 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 3.54 Total: -46.71 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.87 Total: -83.34 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.90 4.12 -57.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.054 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds