Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46758 * 2 1 4 4 C 1.52997 * 109.47126 * 120.00039 * 2 1 3 5 5 C 1.50705 * 109.46886 * 184.99920 * 4 2 1 6 6 H 1.07992 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99333 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00783 * 359.72613 * 7 5 4 9 9 Si 1.86806 * 119.99502 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47174 * 179.72519 * 9 7 5 11 11 H 1.48505 * 109.46996 * 299.72576 * 9 7 5 12 12 H 1.48498 * 109.47299 * 59.72162 * 9 7 5 13 13 N 1.46898 * 109.46890 * 240.00536 * 2 1 3 14 14 C 1.46897 * 111.00517 * 100.12284 * 13 2 1 15 15 C 1.53001 * 109.46952 * 302.39442 * 14 13 2 16 16 C 1.53002 * 109.47005 * 62.39376 * 14 13 2 17 17 C 1.50701 * 109.47092 * 182.39114 * 14 13 2 18 18 C 1.38226 * 120.00304 * 359.73006 * 17 14 13 19 19 C 1.38234 * 120.00162 * 179.76396 * 18 17 14 20 20 C 1.38236 * 119.99785 * 0.50114 * 19 18 17 21 21 C 1.38231 * 120.00075 * 359.75180 * 20 19 18 22 22 C 1.38234 * 119.99809 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47048 * 294.69365 * 1 2 3 24 24 H 1.09001 * 109.47044 * 54.68666 * 1 2 3 25 25 H 1.08994 * 109.46879 * 174.68875 * 1 2 3 26 26 H 1.09000 * 109.46935 * 65.00103 * 4 2 1 27 27 H 1.08997 * 109.47096 * 305.00323 * 4 2 1 28 28 H 0.97002 * 119.99753 * 0.27482 * 8 7 5 29 29 H 1.00900 * 111.00436 * 336.15895 * 13 2 1 30 30 H 1.08996 * 109.46752 * 60.95523 * 15 14 13 31 31 H 1.09002 * 109.47098 * 180.95666 * 15 14 13 32 32 H 1.08998 * 109.46900 * 300.95485 * 15 14 13 33 33 H 1.09002 * 109.47348 * 53.57321 * 16 14 13 34 34 H 1.09005 * 109.47114 * 173.57521 * 16 14 13 35 35 H 1.09002 * 109.47021 * 293.57118 * 16 14 13 36 36 H 1.08007 * 120.00056 * 359.97438 * 18 17 14 37 37 H 1.08005 * 120.00129 * 180.23058 * 19 18 17 38 38 H 1.08007 * 119.99839 * 179.72154 * 20 19 18 39 39 H 1.07998 * 120.00255 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.99968 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2305 -1.1936 2.3577 8 7 3.5762 -1.8336 3.3020 9 14 6.0921 -1.0611 2.4368 10 1 6.5866 -1.7561 3.6523 11 1 6.6849 -1.6921 1.2301 12 1 6.4848 0.3700 2.4904 13 7 2.0197 -0.6924 -1.1995 14 6 2.4224 0.2688 -2.2348 15 6 1.2372 1.1724 -2.5805 16 6 3.5804 1.1230 -1.7148 17 6 2.8625 -0.4766 -3.4684 18 6 2.8451 -1.8587 -3.4839 19 6 3.2442 -2.5423 -4.6171 20 6 3.6704 -1.8439 -5.7313 21 6 3.6928 -0.4619 -5.7141 22 6 3.2884 0.2218 -4.5828 23 1 -0.3633 0.4293 0.9337 24 1 -0.3633 0.5940 -0.8386 25 1 -0.3633 -1.0232 -0.0951 26 1 1.7517 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 2.6094 -1.9021 3.2612 29 1 1.3279 -1.3362 -1.5532 30 1 0.9298 1.7242 -1.6922 31 1 1.5310 1.8745 -3.3608 32 1 0.4064 0.5623 -2.9348 33 1 4.3813 0.4733 -1.3620 34 1 3.9542 1.7566 -2.5192 35 1 3.2306 1.7477 -0.8930 36 1 2.5165 -2.4044 -2.6117 37 1 3.2271 -3.6221 -4.6305 38 1 3.9865 -2.3782 -6.6152 39 1 4.0262 0.0837 -6.5844 40 1 3.3062 1.3016 -4.5691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = -2.652676 kcal Electronic energy + Delta-G solvation = -18504.624577 eV Core-core repulsion = 15896.944112 eV Total energy + Delta-G solvation = -2607.680465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88969 -38.71358 -35.75156 -34.05943 -31.85662 -30.61828 -29.62449 -29.11573 -27.78951 -24.95834 -24.06181 -23.17962 -21.54684 -20.22514 -18.93779 -17.89928 -16.73975 -16.06152 -15.73852 -15.61821 -15.22780 -15.20909 -14.74100 -14.39993 -14.28354 -14.24734 -13.63983 -13.31186 -13.21491 -13.01455 -12.91672 -12.68961 -12.50674 -12.46787 -12.22237 -12.01454 -11.86761 -11.71368 -11.35359 -11.25872 -10.50103 -10.41853 -9.72839 -9.54270 -9.02167 -8.49919 -6.14300 0.54027 0.59506 1.51755 1.60932 1.78707 2.63309 2.96573 3.22865 3.37208 3.72906 4.05765 4.15791 4.23182 4.25133 4.29334 4.37701 4.40735 4.48748 4.65209 4.70005 4.73213 4.79493 4.90115 4.95482 4.98450 5.10680 5.16977 5.22589 5.25184 5.28654 5.29767 5.44208 5.53448 5.65661 5.71369 5.81818 6.19990 6.22524 6.40762 6.48556 6.69270 6.82875 7.62631 8.90455 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.007097 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.869198 B = 3944.265296 C = 4594.544559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H 0.064 0.936 4 C 0.024 3.976 5 C -0.569 4.569 6 H 0.060 0.940 7 C -0.051 4.051 8 N -0.954 5.954 9 Si 1.109 2.891 10 H -0.289 1.289 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.152 3.848 15 C -0.168 4.168 16 C -0.128 4.128 17 C -0.077 4.077 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.123 4.123 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.051 0.949 26 H -0.019 1.019 27 H -0.019 1.019 28 H 0.251 0.749 29 H 0.334 0.666 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 5.064 -19.242 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 H 0.082 0.918 4 C -0.014 4.014 5 C -0.607 4.607 6 H 0.078 0.922 7 C -0.246 4.246 8 N -0.595 5.595 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.195 1.195 13 N -0.301 5.301 14 C 0.061 3.939 15 C -0.226 4.226 16 C -0.185 4.185 17 C -0.077 4.077 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.070 0.930 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.060 0.940 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.899 4.576 -18.104 18.695 hybrid contribution -2.387 0.285 -0.450 2.446 sum -3.286 4.861 -18.553 19.459 Atomic orbital electron populations 1.22560 0.96456 1.01815 1.02259 1.21335 0.92008 0.96854 0.90228 0.91786 1.19174 0.96076 0.93682 0.92464 1.22420 0.93213 1.35562 1.09520 0.92179 1.27143 1.10496 0.93865 0.93090 1.70911 1.09215 1.43506 1.35823 0.83031 0.70507 0.77187 0.76086 1.21440 1.20265 1.19541 1.60552 1.45860 1.18589 1.05077 1.19763 0.94850 0.90858 0.88472 1.22610 0.97793 1.00081 1.02161 1.21887 0.97524 0.98603 1.00511 1.19871 0.99374 0.93869 0.94595 1.21208 1.00345 0.94513 0.98348 1.21391 0.99507 1.00628 0.93424 1.21433 0.99933 0.94773 0.98737 1.21406 0.99634 0.94636 0.98492 1.21150 0.99650 1.00528 0.92789 0.92875 0.90756 0.92953 1.00096 1.00061 0.94004 0.84678 0.92189 0.90673 0.92441 0.94182 0.90609 0.93189 0.86647 0.85146 0.83945 0.83620 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 8.82 71.98 0.63 -4.95 16 2 C 0.11 4.20 1.73 44.92 0.08 4.28 16 3 H 0.06 2.60 5.07 -2.38 -0.01 2.58 16 4 C 0.02 1.24 3.97 29.85 0.12 1.36 16 5 C -0.57 -32.75 8.84 25.60 0.23 -32.53 16 6 H 0.06 3.36 5.73 -2.91 -0.02 3.35 16 7 C -0.05 -3.06 5.46 84.66 0.46 -2.60 16 8 N -0.95 -61.66 13.65 21.45 0.29 -61.37 16 9 Si 1.11 53.27 29.90 68.60 2.05 55.32 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 N -0.67 -24.62 4.74 -451.96 -2.14 -26.76 16 14 C 0.15 4.63 0.78 2.78 0.00 4.64 16 15 C -0.17 -4.16 7.05 71.98 0.51 -3.65 16 16 C -0.13 -4.22 7.45 71.98 0.54 -3.68 16 17 C -0.08 -2.21 4.77 -19.87 -0.09 -2.30 16 18 C -0.13 -3.79 9.12 22.27 0.20 -3.58 16 19 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 20 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 21 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 22 C -0.12 -2.91 8.63 22.27 0.19 -2.71 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.99 5.85 -2.39 -0.01 1.98 16 25 H 0.05 1.67 8.02 -2.39 -0.02 1.65 16 26 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 27 H -0.02 -1.06 8.00 -2.39 -0.02 -1.08 16 28 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 29 H 0.33 11.43 6.87 -89.69 -0.62 10.81 16 30 H 0.06 1.54 5.75 -2.39 -0.01 1.52 16 31 H 0.07 1.56 7.36 -2.39 -0.02 1.54 16 32 H 0.06 1.36 7.98 -2.39 -0.02 1.34 16 33 H 0.04 1.58 6.99 -2.39 -0.02 1.56 16 34 H 0.08 2.00 7.18 -2.38 -0.02 1.99 16 35 H 0.05 1.73 6.37 -2.39 -0.02 1.71 16 36 H 0.12 3.84 6.36 -2.91 -0.02 3.82 16 37 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.13 2.63 7.06 -2.91 -0.02 2.61 16 Total: -1.00 -68.41 308.51 4.25 -64.16 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.51 Total: 22.32 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.54 Total: -53.67 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.85 Total: -88.13 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 2.05 Total: 55.32 kcal Total: -68.41 4.25 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.508 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds